├── .gitignore ├── CHANGELOG.md ├── Detect ├── __init__.py ├── detect-demo.py ├── detect.py ├── inspect-demo.py ├── inspect.py ├── models │ ├── PCA.py │ ├── Zscore.py │ ├── __init__.py │ ├── autoencoder.py │ └── model_prep.py ├── relate.py └── utils │ ├── __init__.py │ ├── explorer.py │ ├── inspector.py │ ├── launcher.py │ ├── loader.py │ ├── reporter.py │ └── stats.py ├── LICENSE ├── README.md ├── bin ├── Detect ├── Inspect └── Relate ├── examples ├── AUC.ipynb ├── ICC.ipynb └── hist.ipynb ├── figures └── keep.txt ├── requirements.txt ├── ressources ├── AE.png ├── README.txt ├── banner.png ├── banner2.png ├── demog-short.csv ├── demogA.csv ├── demogB.csv ├── demogC.csv ├── features-short.xlsx ├── featuresA.xlsx ├── featuresB.xlsx ├── featuresC.xlsx └── icc-repeat.csv ├── setup.py └── tests ├── .placeholder ├── SourceDataFig3.xlsx ├── SourceDataFigs4-5.xlsx ├── anomaly-vector_RISH0_demo.csv ├── auc_RISH0_AutoEncoder_SCHZ.csv ├── auc_RISH0_AutoEncoder_demo.csv ├── auc_RISH0_PCA_SCHZ.csv ├── auc_RISH0_PCA_demo.csv ├── auc_RISH0_Z-score_SCHZ.csv ├── auc_RISH0_Z-score_demo.csv ├── p-val_B.csv ├── scores_RISH0_AutoEncoder_SCHZ.csv └── scores_RISH0_AutoEncoder_demo.csv /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/.gitignore -------------------------------------------------------------------------------- /CHANGELOG.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/CHANGELOG.md -------------------------------------------------------------------------------- /Detect/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /Detect/detect-demo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/detect-demo.py -------------------------------------------------------------------------------- /Detect/detect.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/detect.py -------------------------------------------------------------------------------- /Detect/inspect-demo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/inspect-demo.py -------------------------------------------------------------------------------- /Detect/inspect.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/inspect.py -------------------------------------------------------------------------------- /Detect/models/PCA.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/models/PCA.py -------------------------------------------------------------------------------- /Detect/models/Zscore.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/models/Zscore.py -------------------------------------------------------------------------------- /Detect/models/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /Detect/models/autoencoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/models/autoencoder.py -------------------------------------------------------------------------------- /Detect/models/model_prep.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/models/model_prep.py -------------------------------------------------------------------------------- /Detect/relate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/relate.py -------------------------------------------------------------------------------- /Detect/utils/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /Detect/utils/explorer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/utils/explorer.py -------------------------------------------------------------------------------- /Detect/utils/inspector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/utils/inspector.py -------------------------------------------------------------------------------- /Detect/utils/launcher.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/utils/launcher.py -------------------------------------------------------------------------------- /Detect/utils/loader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/utils/loader.py -------------------------------------------------------------------------------- /Detect/utils/reporter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/utils/reporter.py -------------------------------------------------------------------------------- /Detect/utils/stats.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/Detect/utils/stats.py -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/README.md -------------------------------------------------------------------------------- /bin/Detect: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/bin/Detect -------------------------------------------------------------------------------- /bin/Inspect: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/bin/Inspect -------------------------------------------------------------------------------- /bin/Relate: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/bin/Relate -------------------------------------------------------------------------------- /examples/AUC.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/examples/AUC.ipynb -------------------------------------------------------------------------------- /examples/ICC.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/examples/ICC.ipynb -------------------------------------------------------------------------------- /examples/hist.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/examples/hist.ipynb -------------------------------------------------------------------------------- /figures/keep.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/requirements.txt -------------------------------------------------------------------------------- /ressources/AE.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/AE.png -------------------------------------------------------------------------------- /ressources/README.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/README.txt -------------------------------------------------------------------------------- /ressources/banner.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/banner.png -------------------------------------------------------------------------------- /ressources/banner2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/banner2.png -------------------------------------------------------------------------------- /ressources/demog-short.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/demog-short.csv -------------------------------------------------------------------------------- /ressources/demogA.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/demogA.csv -------------------------------------------------------------------------------- /ressources/demogB.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/demogB.csv -------------------------------------------------------------------------------- /ressources/demogC.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/demogC.csv -------------------------------------------------------------------------------- /ressources/features-short.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/features-short.xlsx -------------------------------------------------------------------------------- /ressources/featuresA.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/featuresA.xlsx -------------------------------------------------------------------------------- /ressources/featuresB.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/featuresB.xlsx -------------------------------------------------------------------------------- /ressources/featuresC.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/featuresC.xlsx -------------------------------------------------------------------------------- /ressources/icc-repeat.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/ressources/icc-repeat.csv -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/setup.py -------------------------------------------------------------------------------- /tests/.placeholder: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/SourceDataFig3.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/tests/SourceDataFig3.xlsx -------------------------------------------------------------------------------- /tests/SourceDataFigs4-5.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/tests/SourceDataFigs4-5.xlsx -------------------------------------------------------------------------------- /tests/anomaly-vector_RISH0_demo.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/tests/anomaly-vector_RISH0_demo.csv -------------------------------------------------------------------------------- /tests/auc_RISH0_AutoEncoder_SCHZ.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/tests/auc_RISH0_AutoEncoder_SCHZ.csv -------------------------------------------------------------------------------- /tests/auc_RISH0_AutoEncoder_demo.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/tests/auc_RISH0_AutoEncoder_demo.csv -------------------------------------------------------------------------------- /tests/auc_RISH0_PCA_SCHZ.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/tests/auc_RISH0_PCA_SCHZ.csv -------------------------------------------------------------------------------- /tests/auc_RISH0_PCA_demo.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/tests/auc_RISH0_PCA_demo.csv -------------------------------------------------------------------------------- /tests/auc_RISH0_Z-score_SCHZ.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/tests/auc_RISH0_Z-score_SCHZ.csv -------------------------------------------------------------------------------- /tests/auc_RISH0_Z-score_demo.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/tests/auc_RISH0_Z-score_demo.csv -------------------------------------------------------------------------------- /tests/p-val_B.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/tests/p-val_B.csv -------------------------------------------------------------------------------- /tests/scores_RISH0_AutoEncoder_SCHZ.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/tests/scores_RISH0_AutoEncoder_SCHZ.csv -------------------------------------------------------------------------------- /tests/scores_RISH0_AutoEncoder_demo.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chamberm/Detect/HEAD/tests/scores_RISH0_AutoEncoder_demo.csv --------------------------------------------------------------------------------