├── .gitattributes ├── .gitignore ├── Python ├── README.md └── chemdisgene │ ├── __init__.py │ ├── analysis │ ├── __init__.py │ └── datastats.py │ └── data │ ├── __init__.py │ └── pubtator.py ├── README.md ├── SECURITY.md ├── baseline ├── Makefile ├── README.md ├── fastentrypoints.py ├── requirements.txt ├── set_environment.sh ├── setup.py └── src │ ├── main.py │ ├── module │ ├── __init__.py │ ├── data_loader.py │ ├── model.py │ ├── neural.py │ ├── setup.py │ ├── train.py │ └── utils.py │ └── tsv2json.py ├── curation └── AnnotationGuidelines.pdf └── data ├── ctd_derived ├── README.txt ├── ctd_stats.txt ├── dev_abstracts.txt.gz ├── dev_relationships.tsv.gz ├── test_abstracts.txt.gz ├── test_relationships.tsv.gz ├── train_abstracts.txt.gz └── train_relationships.tsv.gz └── curated ├── README.txt ├── abstracts.txt.gz ├── approved_relns_ctd_v1.tsv.gz ├── approved_relns_new_v1.tsv.gz ├── curated_stats.txt └── drugprot_pmids.txt.gz /.gitattributes: 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