├── LICENSE ├── README.md ├── biasfield_interpolate_cchen ├── README.md ├── adv_bias.py ├── adv_transformation_base.py └── utils.py ├── configs_exp.py ├── data ├── abdominal │ ├── CHAOST2 │ │ ├── s1_dcm2nii.sh │ │ ├── s2_image_normalize.ipynb │ │ └── s3_resize_roi_reindex.ipynb │ └── SABSCT │ │ ├── s1_intensity_normalization.ipynb │ │ ├── s2_remove_excessive_boundary.ipynb │ │ └── s3_resample_and_roi.ipynb └── prostate │ ├── step1_copy_and_reindex.ipynb │ └── step2_resample.ipynb ├── dataloaders ├── AbdominalDataset.py ├── ProstateDataset.py ├── abd_dataset_utils.py ├── image_transforms.py ├── niftiio.py └── transform_utils.py ├── dev_traintest_ginipa.py ├── exp_scripts ├── abdominal_gin_ipa_example.sh ├── abdominal_test_example.sh ├── prostate_gin_ipa_example_CAE.sh └── prostate_test_example.sh ├── intro.png ├── models ├── __init__.py ├── base_model.py ├── exp_trainer.py ├── imagefilter.py ├── imagefilter3d.py ├── segloss.py └── smpmodels.py ├── my_utils ├── __init__.py └── util.py 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