├── .gitignore ├── AdditiveGP-v8.png ├── GUI ├── collectResult.m ├── file_window.mlapp ├── gam_pdf.m ├── genComPlots.m ├── genNSfigure.m ├── gpcf_cat.m ├── gpcf_constant.m ├── gpcf_mask.m ├── gpcf_periodic.m ├── gpcf_sexp.m ├── init_window.mlapp ├── invgam_pdf.m ├── kernel_dialog.mlapp ├── laplace_pdf.m ├── lik_gaussian.m ├── misc_window.mlapp ├── norm_pdf.m ├── nstran.m ├── parseKernel.m ├── parsePrior.m ├── plot_window.mlapp ├── prior_fixed.m ├── prior_gamma.m ├── prior_gaussian.m ├── prior_invgamma.m ├── prior_invt.m ├── prior_invunif.m ├── prior_laplace.m ├── prior_loggaussian.m ├── prior_loglogunif.m ├── prior_logt.m ├── prior_logunif.m ├── prior_sinvchi2.m ├── prior_sqinvgamma.m ├── prior_sqinvlogunif.m ├── prior_sqinvsinvchi2.m ├── prior_sqinvunif.m ├── prior_sqrtinvt.m ├── prior_sqrtinvunif.m ├── prior_sqrtt.m ├── prior_sqrtunif.m ├── prior_t.m ├── prior_unif.m ├── settings_window.mlapp ├── sinvchi2_pdf.m ├── t_lpdf.m └── t_pdf.m ├── LICENSE ├── MatlabGUI_installer └── LonGP_UI.mlappinstall ├── README.md ├── comparison ├── ard │ ├── ard_main.m │ └── myker.m └── lmm │ ├── genCVinds.m │ ├── lmm.m │ ├── lmm_main.m │ └── lmm_main1.m ├── compileLonGP.m ├── conf ├── LonGP_linux.sh ├── LonGP_mac.sh ├── input.para.txt ├── kernel.template.txt └── prior.template.txt ├── datasets ├── liuData.xlsx ├── metagenomicsData.xlsx ├── metagenomics_preproc.mat └── preprocLiu.mat ├── example ├── data │ ├── X.txt │ └── Y.txt ├── expectedOutput.zip ├── input.para.txt └── target_1-com_1+3.png ├── impute ├── genComPlots1.m ├── genInterpVec.m ├── genShiftVec.m └── genTestData1.m ├── lonGP.m ├── paraLonGP.m ├── preprocData.m ├── private ├── binStep1.m ├── binStep2.m ├── clearParaResults.m ├── clearResults.m ├── cmpBinModels.m ├── cmpConModels.m ├── conStep1.m ├── conStep2.m ├── denormX.m ├── denormY.m ├── detransX.m ├── findModelIndex.m ├── genCf.m ├── genComPrediction.m ├── genModelIndexMat.m ├── genScvIndex.m ├── genTestData.m ├── getComponentPredictions.m ├── 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