├── LICENSE ├── README.md ├── data ├── Mouse_brain_Adult_sub.tif ├── Mouse_liver_bin_2104.tsv.tar.gz ├── Mouse_liver_bin_2105.tsv.tar.gz ├── Mouse_liver_bin_2106.tsv.tar.gz ├── Mouse_liver_bin_2107.tsv.tar.gz ├── tile_2104.tiff ├── tile_2105.tiff ├── tile_2106.tiff └── tile_2107.tiff ├── environment.yml ├── evaluation.py ├── example.py ├── format.py ├── large_scale.py ├── patch_cut.py ├── results ├── spot2cell_SCS_5700:5700:1200:1200.txt ├── spot2cell_watershed_5700:5700:1200:1200.txt └── spot2nucl_5700:5700:1200:1200.txt ├── seqscope.py └── src ├── __pycache__ ├── postprocessing.cpython-39.pyc ├── preprocessing.cpython-39.pyc ├── scs.cpython-39.pyc └── transformer.cpython-39.pyc ├── postprocessing.py ├── preprocessing.py ├── scs.py └── transformer.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chenhcs/SCS/HEAD/LICENSE -------------------------------------------------------------------------------- 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