├── Examples ├── example1.m ├── example2.m ├── example3.m ├── example4.m ├── example5.m ├── example6.m ├── example7.m └── example8.m ├── Images └── MRS_voxel_planner.PNG ├── LICENSE ├── MRI_lib ├── io │ ├── NIfTI_20140122 │ │ ├── FAQ.pdf │ │ ├── NIfTI_tools.pdf │ │ ├── UseANALYZE.pdf │ │ ├── affine.m │ │ ├── bipolar.m │ │ ├── bresenham_line3d.m │ │ ├── clip_nii.m │ │ ├── collapse_nii_scan.m │ │ ├── examples.txt │ │ ├── expand_nii_scan.m │ │ ├── extra_nii_hdr.m │ │ ├── flip_lr.m │ │ ├── get_nii_frame.m │ │ ├── license.txt │ │ ├── load_nii.m │ │ ├── load_nii_ext.m │ │ ├── load_nii_hdr.m │ │ ├── load_nii_img.m │ │ ├── load_untouch0_nii_hdr.m │ │ ├── load_untouch_header_only.m │ │ ├── load_untouch_nii.m │ │ ├── load_untouch_nii_hdr.m │ │ ├── load_untouch_nii_img.m │ │ ├── make_ana.m │ │ ├── make_nii.m │ │ ├── mat_into_hdr.m │ │ ├── pad_nii.m │ │ ├── reslice_nii.m │ │ ├── rri_file_menu.m │ │ ├── rri_orient.m │ │ ├── rri_orient_ui.m │ │ ├── rri_select_file.m │ │ ├── rri_xhair.m │ │ ├── rri_zoom_menu.m │ │ ├── save_nii.m │ │ ├── save_nii_ext.m │ │ ├── save_nii_hdr.m │ │ ├── save_untouch0_nii_hdr.m │ │ ├── save_untouch_header_only.m │ │ ├── save_untouch_nii.m │ │ ├── save_untouch_nii_hdr.m │ │ ├── save_untouch_slice.m │ │ ├── unxform_nii.m │ │ ├── verify_nii_ext.m │ │ ├── view_nii.m │ │ ├── view_nii_menu.m │ │ └── xform_nii.m │ ├── mri_readHDR.m │ ├── mri_readIMG.m │ ├── mri_readLog.m │ ├── mri_readPAR.m │ ├── mri_readREC.m │ └── mri_writeIMG.m └── utils │ ├── mri_IRcurve.m │ ├── mri_absIRcurveFit.m │ ├── mri_calRESPphase.m │ ├── mri_createMask.m │ ├── mri_dispSVOI.m │ ├── mri_estAng.m │ ├── mri_locateSVOI.m │ ├── mri_locateSlices.m │ ├── mri_registration.m │ ├── mri_retroCorr.m │ └── mri_transformSVOI.m ├── MRS_lib ├── io │ ├── ReadVAX │ │ ├── anExampleVAXDG.m │ │ ├── freadVAXD.m │ │ ├── freadVAXG.m │ │ ├── license.txt │ │ ├── readme.txt │ │ ├── testData.mat │ │ ├── test_vaxd │ │ ├── test_vaxg │ │ ├── uint32le_to_VAXF.m │ │ ├── uint64le_to_VAXD.m │ │ └── uint64le_to_VAXG.m │ ├── WriteVAX │ │ ├── VAXD_to_uint64le.m │ │ ├── VAXF_to_uint32le.m │ │ ├── VAXG_to_uint64le.m │ │ ├── fwriteVAX.m │ │ ├── fwriteVAXD.m │ │ ├── fwriteVAXG.m │ │ ├── license.txt │ │ └── readme.pdf │ ├── hdr_template.SPAR │ ├── mrs_editSPAR.m │ ├── mrs_readDATA.m │ ├── mrs_readGEpfile.m │ ├── mrs_readJmruiTXT.m │ ├── mrs_readLIST.m │ ├── mrs_readLcmodelBASIS.m │ ├── mrs_readLcmodelBasisRAW.m │ ├── mrs_readLcmodelCOORD.m │ ├── mrs_readLcmodelRAW.m │ ├── mrs_readLcmodelTABLE.m │ ├── mrs_readRAW.m │ ├── mrs_readRDA.m │ ├── mrs_readSDAT.m │ ├── mrs_readSIN.m │ ├── mrs_readSPAR.m │ ├── mrs_writeLcmodelBasisRAW.m │ ├── mrs_writeLcmodelIN.m │ ├── mrs_writeSDAT.m │ └── mrs_writeSPAR.m ├── postprocess │ ├── mrs_apod.m │ ├── mrs_average.m │ ├── mrs_fft.m │ ├── mrs_firstPHC.m │ ├── mrs_highpass.m │ ├── mrs_ifft.m │ ├── mrs_lowpass.m │ ├── mrs_manualzeroPHC.m │ ├── mrs_realign.m │ ├── mrs_rephase.m │ ├── mrs_truncate.m │ ├── mrs_zeroPHC.m │ └── mrs_zerofill.m ├── simulation │ ├── mrs_ISISscheme.m │ ├── mrs_PRESS.m │ ├── mrs_STEAM.m │ ├── mrs_sLASER.m │ └── mrs_simulateFID.m ├── utils │ ├── mrs_T1corr.m │ ├── mrs_T2corr.m │ ├── mrs_calFWHM.m │ ├── mrs_calTemp.m │ ├── mrs_findPeak.m │ ├── mrs_fitPeak.m │ ├── mrs_gaussianFit.m │ ├── mrs_gaussianFun.m │ ├── mrs_lorentzFit.m │ ├── mrs_lorentzFun.m │ ├── mrs_plotBASISspectrum.m │ ├── mrs_plotSpectra.m │ ├── mrs_points2Hz.m │ ├── mrs_points2ppm.m │ ├── mrs_ppm2Hz.m │ ├── mrs_rot90.m │ ├── mrs_selectPeakrange.m │ └── mrs_viewCSI.m └── voxel_planner │ ├── HarvardOxford-cort-maxprob-thr0-1mm.nii.gz │ ├── HarvardOxford-cort-maxprob-thr0-1mm.txt │ ├── MNI152_T1_1mm.nii.gz │ ├── MNI152_T1_1mm_brain.nii.gz │ ├── create_stdMaskvoxel.fig │ └── create_stdMaskvoxel.m ├── NMR_lib ├── nmr_bloch.m ├── nmr_calT2star.m └── nmr_getGamma.m ├── QM_lib ├── qm_B.m ├── qm_Dprod.m ├── qm_Lrelax.m ├── qm_One.m ├── qm_Peq1.m ├── qm_Peq2.m ├── qm_Rot1.m ├── qm_Rot2.m ├── qm_RotAxis.m ├── qm_Trelax.m ├── qm_getM.m ├── qm_iniOpt1.m ├── 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