├── .coveragerc ├── .github └── workflows │ └── ci.yml ├── .gitignore ├── AUTHORS.md ├── CHANGELOG.md ├── CITE.md ├── LICENCE.txt ├── README.md ├── cherab ├── __init__.py ├── core │ ├── VERSION │ ├── __init__.pxd │ ├── __init__.py │ ├── atomic │ │ ├── __init__.pxd │ │ ├── __init__.py │ │ ├── data │ │ │ ├── lineshape │ │ │ │ ├── stark │ │ │ │ │ ├── d.json │ │ │ │ │ ├── h.json │ │ │ │ │ └── t.json │ │ │ │ └── zeeman │ │ │ │ │ └── parametrised │ │ │ │ │ ├── b.json │ │ │ │ │ ├── be.json │ │ │ │ │ ├── c.json │ │ │ │ │ ├── d.json │ │ │ │ │ ├── h.json │ │ │ │ │ ├── he.json │ │ │ │ │ ├── he3.json │ │ │ │ │ ├── n.json │ │ │ │ │ ├── ne.json │ │ │ │ │ └── o.json │ │ │ └── maxwellian_free_free_gaunt_factor.json │ │ ├── elements.pxd │ │ ├── elements.pyx │ │ ├── gaunt.pxd │ │ ├── gaunt.pyx │ │ ├── interface.pxd │ │ ├── interface.pyx │ │ ├── line.pxd │ │ ├── line.pyx │ │ ├── rates.pxd │ │ ├── rates.pyx │ │ ├── zeeman.pxd │ │ └── zeeman.pyx │ ├── beam │ │ ├── __init__.pxd │ │ ├── __init__.py │ │ ├── material.pxd │ │ ├── material.pyx │ │ ├── model.pxd │ │ ├── model.pyx │ │ ├── node.pxd │ │ └── node.pyx │ ├── distribution.pxd │ ├── distribution.pyx │ ├── laser │ │ ├── __init__.pxd │ │ ├── __init__.py │ │ ├── laserspectrum.pxd │ │ ├── laserspectrum.pyx │ │ ├── material.pxd │ │ ├── material.pyx │ │ ├── model.pxd │ │ ├── model.pyx │ │ ├── node.pxd │ │ ├── node.pyx │ │ ├── profile.pxd │ │ ├── profile.pyx │ │ └── tests │ │ │ ├── __init__.py │ │ │ ├── test_laser.py │ │ │ └── test_laserspectrum.py │ ├── math │ │ ├── __init__.pxd │ │ ├── __init__.py │ │ ├── caching │ │ │ ├── __init__.pxd │ │ │ ├── __init__.py │ │ │ ├── caching1d.pxd │ │ │ ├── caching1d.pyx │ │ │ ├── caching2d.pxd │ │ │ ├── caching2d.pyx │ │ │ ├── caching3d.pxd │ │ │ ├── caching3d.pyx │ │ │ ├── tests │ │ │ │ ├── __init__.py │ │ │ │ ├── test_caching1d.py │ │ │ │ ├── test_caching2d.py │ │ │ │ └── test_caching3d.py │ │ │ └── utility.py │ │ ├── clamp.pxd │ │ ├── clamp.pyx │ │ ├── function │ │ │ ├── __init__.pxd │ │ │ └── __init__.py │ │ ├── integrators │ │ │ ├── __init__.pxd │ │ │ ├── __init__.py │ │ │ ├── integrators1d.pxd │ │ │ └── integrators1d.pyx │ │ ├── interpolators │ │ │ ├── __init__.pxd │ │ │ ├── __init__.py │ │ │ ├── interpolators1d.pxd │ │ │ ├── interpolators1d.pyx │ │ │ ├── interpolators2d.pxd │ │ │ ├── interpolators2d.pyx │ │ │ ├── interpolators3d.pxd │ │ │ ├── interpolators3d.pyx │ │ │ ├── tests │ │ │ │ ├── __init__.py │ │ │ │ ├── data_test_interpolators3d.py │ │ │ │ ├── scripts │ │ │ │ │ ├── __init__.py │ │ │ │ │ ├── generate_interp_1d_c1.py │ │ │ │ │ ├── generate_interp_1d_c2.py │ │ │ │ │ ├── generate_interp_2d.py │ │ │ │ │ └── generate_interp_3d.py │ │ │ │ ├── test_interpolators1d.py │ │ │ │ ├── test_interpolators2d.py │ │ │ │ └── test_interpolators3d.py │ │ │ ├── utility.pxd │ │ │ └── utility.pyx │ │ ├── mappers.pxd │ │ ├── mappers.pyx │ │ ├── mask.pxd │ │ ├── mask.pyx │ │ ├── samplers.pxd │ │ ├── samplers.pyx │ │ ├── slice.pxd │ │ ├── slice.pyx │ │ ├── tests │ │ │ ├── __init__.py │ │ │ ├── test_integrators.py │ │ │ ├── test_mappers.py │ │ │ ├── test_samplers.py │ │ │ └── test_transform.py │ │ └── transform │ │ │ ├── __init__.pxd │ │ │ ├── __init__.py │ │ │ ├── cylindrical.pxd │ │ │ ├── cylindrical.pyx │ │ │ ├── periodic.pxd │ │ │ └── periodic.pyx │ ├── model │ │ ├── __init__.pxd │ │ ├── __init__.py │ │ ├── attenuator │ │ │ ├── __init__.pxd │ │ │ ├── __init__.py │ │ │ ├── singleray.pxd │ │ │ └── singleray.pyx │ │ ├── beam │ │ │ ├── __init__.pxd │ │ │ ├── __init__.py │ │ │ ├── beam_emission.pxd │ │ │ ├── beam_emission.pyx │ │ │ ├── charge_exchange.pxd │ │ │ └── charge_exchange.pyx │ │ ├── laser │ │ │ ├── __init__.pxd │ │ │ ├── __init__.py │ │ │ ├── laserspectrum.pxd │ │ │ ├── laserspectrum.pyx │ │ │ ├── math_functions.pxd │ │ │ ├── math_functions.pyx │ │ │ ├── model.pxd │ │ │ ├── model.pyx │ │ │ ├── profile.pxd │ │ │ ├── profile.pyx │ │ │ └── tests │ │ │ │ ├── __init__.py │ │ │ │ ├── test_laserspectrum.py │ │ │ │ ├── test_model.py │ │ │ │ └── test_profiles.py │ │ ├── lineshape │ │ │ ├── __init__.pxd │ │ │ ├── __init__.py │ │ │ ├── base.pxd │ │ │ ├── base.pyx │ │ │ ├── beam │ │ │ │ ├── __init__.pxd │ │ │ │ ├── __init__.py │ │ │ │ ├── base.pxd │ │ │ │ ├── base.pyx │ │ │ │ ├── mse.pxd │ │ │ │ └── mse.pyx │ │ │ ├── doppler.pxd │ │ │ ├── doppler.pyx │ │ │ ├── gaussian.pxd │ │ │ ├── gaussian.pyx │ │ │ ├── multiplet.pxd │ │ │ ├── multiplet.pyx │ │ │ ├── stark.pxd │ │ │ ├── stark.pyx │ │ │ ├── zeeman.pxd │ │ │ └── zeeman.pyx │ │ └── plasma │ │ │ ├── __init__.pxd │ │ │ ├── __init__.py │ │ │ ├── bremsstrahlung.pxd │ │ │ ├── bremsstrahlung.pyx │ │ │ ├── impact_excitation.pxd │ │ │ ├── impact_excitation.pyx │ │ │ ├── recombination.pxd │ │ │ ├── recombination.pyx │ │ │ ├── thermal_cx.pxd │ │ │ ├── thermal_cx.pyx │ │ │ ├── total_radiated_power.pxd │ │ │ └── total_radiated_power.pyx │ ├── plasma │ │ ├── __init__.pxd │ │ ├── __init__.py │ │ ├── material.pxd │ │ ├── material.pyx │ │ ├── model.pxd │ │ ├── model.pyx │ │ ├── node.pxd │ │ └── node.pyx │ ├── species.pxd │ ├── species.pyx │ ├── tests │ │ ├── __init__.py │ │ ├── test_beam.py │ │ ├── test_beamcxline.py │ │ ├── test_bremsstrahlung.py │ │ ├── test_line_emission.py │ │ ├── test_lineshapes.py │ │ ├── test_maxwellian.py │ │ ├── test_species.py │ │ └── test_total_radiated_power.py │ └── utility │ │ ├── __init__.pxd │ │ ├── __init__.py │ │ ├── constants.pxd │ │ ├── constants.pyx │ │ ├── conversion.py │ │ ├── notify.py │ │ ├── recursivedict.py │ │ └── tests │ │ ├── __init__.py │ │ └── test_conversion.py ├── generomak │ ├── __init__.py │ ├── equilibrium │ │ ├── __init__.py │ │ ├── data │ │ │ └── generomak_equilibrium.json │ │ └── equilibrium.py │ ├── machine │ │ ├── __init__.py │ │ ├── data │ │ │ └── first_wall │ │ │ │ ├── BottomBaffle.obj │ │ │ │ ├── BottomDivertorFloor.obj │ │ │ │ ├── BottomInnerVerticalTarget.obj │ │ │ │ ├── BottomOuterVerticalTarget.obj │ │ │ │ ├── InnerDivertorBaffle.obj │ │ │ │ ├── InnerWallLimiter.obj │ │ │ │ ├── OuterWallLimiter.obj │ │ │ │ ├── TopBaffle.obj │ │ │ │ ├── TopDivertorFloor.obj │ │ │ │ ├── TopInnerVerticalTarget.obj │ │ │ │ └── TopOuterVerticalTarget.obj │ │ └── first_wall.py │ └── plasma │ │ ├── __init__.py │ │ ├── data │ │ ├── core │ │ │ ├── carbon0.json │ │ │ ├── carbon1.json │ │ │ ├── carbon2.json │ │ │ ├── carbon3.json │ │ │ ├── carbon4.json │ │ │ ├── carbon5.json │ │ │ ├── carbon6.json │ │ │ ├── electrons.json │ │ │ ├── hydrogen0.json │ │ │ ├── hydrogen1.json │ │ │ └── psi_norm.json │ │ └── edge │ │ │ ├── carbon0.json │ │ │ ├── carbon1.json │ │ │ ├── carbon2.json │ │ │ ├── carbon3.json │ │ │ ├── carbon4.json │ │ │ ├── carbon5.json │ │ │ ├── carbon6.json │ │ │ ├── electrons.json │ │ │ ├── hydrogen0.json │ │ │ ├── hydrogen1.json │ │ │ └── mesh.json │ │ └── plasma.py ├── openadas │ ├── __init__.py │ ├── install.py │ ├── openadas.py │ ├── parse │ │ ├── __init__.py │ │ ├── adf11.py │ │ ├── adf12.py │ │ ├── adf15.py │ │ ├── adf21.py │ │ ├── adf22.py │ │ └── utility.py │ ├── rates │ │ ├── __init__.pxd │ │ ├── __init__.py │ │ ├── atomic.pxd │ │ ├── atomic.pyx │ │ ├── beam.pxd │ │ ├── beam.pyx │ │ ├── cx.pxd │ │ ├── cx.pyx │ │ ├── pec.pxd │ │ ├── pec.pyx │ │ ├── radiated_power.pxd │ │ └── radiated_power.pyx │ ├── repository │ │ ├── __init__.py │ │ ├── atomic.py │ │ ├── beam │ │ │ ├── __init__.py │ │ │ ├── cx.py │ │ │ ├── emission.py │ │ │ ├── population.py │ │ │ └── stopping.py │ │ ├── create.py │ │ ├── pec.py │ │ ├── radiated_power.py │ │ ├── utility.py │ │ └── wavelength.py │ └── tests │ │ ├── __init__.py │ │ └── test_adf11_charges.py └── tools │ ├── __init__.py │ ├── emitters │ ├── __init__.py │ ├── radiation_function.pxd │ └── radiation_function.pyx │ ├── equilibrium │ ├── __init__.py │ ├── efit.pxd │ ├── efit.pyx │ ├── eqdsk.py │ ├── example.json │ ├── example.py │ └── plot.py │ ├── inversions │ ├── __init__.py │ ├── admt_utils.py │ ├── lstsq.py │ ├── nnls.py │ ├── opencl │ │ ├── __init__.py │ │ ├── opencl_utils.py │ │ ├── sart_kernels.cl │ │ ├── sart_kernels_atomic.cl │ │ └── sart_opencl.py │ ├── sart.pyx │ ├── svd.py │ └── voxels.pyx │ ├── observers │ ├── __init__.py │ ├── bolometry.py │ ├── calcam.py │ ├── group │ │ ├── __init__.py │ │ ├── base.py │ │ ├── fibreoptic.py │ │ ├── pixel.py │ │ ├── plotting.py │ │ ├── sightline.py │ │ ├── spectroscopic.py │ │ └── targettedpixel.py │ ├── intersections.py │ └── spectroscopy │ │ ├── __init__.py │ │ ├── base.py │ │ ├── fibreoptic.py │ │ └── sightline.py │ ├── plasmas │ ├── __init__.py │ ├── gaussian_volume.pyx │ ├── ionisation_balance.py │ └── slab.pyx │ ├── primitives │ ├── __init__.py │ ├── annulus_mesh.py │ ├── axisymmetric_mesh.pxd │ ├── axisymmetric_mesh.pyx │ ├── toroidal_mesh.pxd │ └── toroidal_mesh.pyx │ ├── raytransfer │ ├── __init__.pxd │ ├── __init__.py │ ├── emitters.pxd │ ├── emitters.pyx │ ├── pipelines.py │ ├── raytransfer.py │ ├── roughconductor.pxd │ ├── roughconductor.pyx │ └── roughmetal.py │ ├── spectroscopy │ ├── __init__.py │ ├── instrument.py │ ├── polychromator.py │ └── spectrometer.py │ └── tests │ ├── __init__.py │ ├── data │ ├── atomic_rates_mockup │ │ ├── ionisation │ │ │ ├── h.json │ │ │ ├── he.json │ │ │ └── ne.json │ │ ├── recombination │ │ │ ├── h.json │ │ │ ├── he.json │ │ │ └── ne.json │ │ └── thermal_cx │ │ │ └── h │ │ │ └── 0 │ │ │ ├── h.json │ │ │ ├── he.json │ │ │ └── ne.json │ ├── geometry_matrix.npy │ ├── receiver.npy │ └── true_emissivity.npy │ ├── test_admt.py │ ├── test_ionization_balance.py │ ├── test_observer_groups.py │ ├── test_plasma_slabs.py │ ├── test_raytransfer.py │ ├── test_sart_opencl.py │ ├── test_spectroscopic_instruments.py │ └── test_voxels.py ├── demos ├── balmer_series.py ├── beam.py ├── emission_models │ ├── beam_emission_spectrum.py │ ├── bremsstrahlung.py │ ├── charge_exchange.py │ ├── multiplet.py │ ├── stark_broadening.py │ ├── stark_zeeman.py │ ├── thermal_charge_exchange.py │ └── zeeman_splitting.py ├── equilibrium │ └── equilibrium.py ├── generomak │ └── plasma │ │ ├── plot_2d_plasma.py │ │ ├── plot_2d_profiles.py │ │ └── plot_core_profiles.py ├── laser │ ├── laser_profile.py │ ├── laser_spectrum.py │ ├── model_seldenmatoba.py │ └── thomson_scattering.py ├── observers │ ├── bolometry │ │ ├── .gitignore │ │ ├── calculate_etendue.py │ │ ├── camera_from_mesh_and_coordinates.py │ │ ├── camera_from_primitives.py │ │ ├── demo_camera_mesh.stl │ │ ├── geometry_matrix_with_raytransfer.py │ │ ├── geometry_matrix_with_voxels.py │ │ ├── inversion_with_raytransfer.py │ │ ├── inversion_with_voxels.py │ │ ├── irvb.py │ │ └── observe_radiation_function.py │ └── groups.py ├── openadas │ ├── adf15_plots.py │ ├── beam_plasma_interaction_rates.py │ ├── frac_abundance.py │ └── plot_thermalxcrates.py ├── plasma-and-beam.py ├── plasmas │ ├── analytic_plasma.py │ ├── analytic_plasma_function_framework.py │ ├── beam_into_slab.py │ ├── ionisation_balance_1d.py │ ├── ionisation_balance_2d.py │ ├── mesh_plasma.py │ └── slab_plasma.py ├── radiation_loads │ ├── radiation_function.py │ ├── symmetric_power_load.py │ └── wall_from_polygon.py └── ray_transfer │ ├── 1_ray_transfer_box.py │ ├── 2_ray_transfer_cylinder.py │ ├── 3_ray_transfer_mask.py │ └── 4_ray_transfer_map.py ├── dev ├── build.sh ├── build_docs.sh ├── clean.sh ├── pypi_notes.md └── test.sh ├── docs ├── Makefile └── source │ ├── atomic │ ├── atomic_data.rst │ ├── atomic_data_interface.rst │ ├── data_interpolators.rst │ ├── elements_and_isotopes.rst │ ├── emission_lines.rst │ ├── gaunt_factors.rst │ ├── openadas.rst │ ├── rate_coefficients.rst │ └── repository.rst │ ├── available_modules.rst │ ├── conf.py │ ├── demonstrations │ ├── active_spectroscopy │ │ ├── BES_camera.png │ │ ├── BES_sightline.png │ │ ├── BES_spectrum_full.png │ │ ├── BES_spectrum_zoomed.png │ │ ├── CXS_camera.png │ │ ├── CXS_multi_sightlines.png │ │ ├── CXS_spectrum.png │ │ ├── beam_bes.rst │ │ └── beam_cxs.rst │ ├── atomic_data │ │ ├── D_alpha_PECs.png │ │ ├── beam_emission_rates.png │ │ ├── beam_plasma_interactions.rst │ │ ├── beam_population_rates.png │ │ ├── beam_stopping_rates.png │ │ ├── effective_cx_rates.png │ │ ├── fractional_abundance.png │ │ ├── fractional_abundance.rst │ │ ├── photon_emissivity_coefficients.rst │ │ ├── radiated_powers.rst │ │ └── stage_resolved_radiation.png │ ├── bolometry │ │ ├── bolometer_and_radiation_function.png │ │ ├── bolometer_etendues.svg │ │ ├── bolometer_inversion_lines_of_sight.svg │ │ ├── bolometer_raytransfer_calculated_powers.svg │ │ ├── bolometer_raytransfer_sensitivities.png │ │ ├── bolometer_voxel_calculated_powers.svg │ │ ├── bolometer_voxel_sensitivities.png │ │ ├── calculate_etendue.rst │ │ ├── camera_from_mesh_and_coordinates.rst │ │ ├── camera_from_mesh_and_coordinates.svg │ │ ├── camera_from_primitives.rst │ │ ├── camera_from_primitives.svg │ │ ├── dummy_camera_box.png │ │ ├── geometry_matrix_from_voxels.rst │ │ ├── geometry_matrix_with_raytransfer.rst │ │ ├── inversion_with_raytransfer.rst │ │ ├── inversion_with_raytransfer_profile.png │ │ ├── inversion_with_voxels.rst │ │ ├── inversion_with_voxels_profile.png │ │ └── observing_radiation_function.rst │ ├── demonstrations.rst │ ├── jet_cxrs │ │ ├── JET_CXRS_d5lines.png │ │ ├── JET_demo_76666.py │ │ ├── jet_demo_76666.rst │ │ └── quickstart.rst │ ├── line_emission │ │ ├── balmer_series.py │ │ ├── balmer_series_spectra.png │ │ ├── balmer_series_spectra.rst │ │ ├── custom_emission_model.py │ │ ├── custom_emitter.rst │ │ ├── mastu_bulletb_midplane_dalpha.png │ │ ├── mastu_bulletb_midplane_dgamma.png │ │ ├── mastu_divcam_isp_ciii_465.png │ │ ├── mastu_divcam_sxd_dalpha.png │ │ ├── mastu_divcam_sxd_dalpha_150_samples.png │ │ ├── mastu_forward_cameras.rst │ │ ├── mastu_midplane_dalpha_excitation.png │ │ ├── ne_ray_trajectory.png │ │ ├── normalised_emission_ray_trajectory.png │ │ ├── poloidal_dalpha_emission.png │ │ └── te_ray_trajectory.png │ ├── passive_spectroscopy │ │ ├── BalmerSeries_camera.png │ │ ├── BalmerSeries_spectrum.png │ │ ├── BalmerSeries_spectrum_zoomed.png │ │ ├── balmer_series.rst │ │ ├── multiplet.rst │ │ ├── multiplet_spectrum.png │ │ ├── stark_broadening.rst │ │ ├── stark_spectrum.png │ │ ├── stark_zeeman.rst │ │ ├── stark_zeeman_balmer_alpha.png │ │ ├── stark_zeeman_paschen_beta.png │ │ ├── zeeman_spectroscopy.rst │ │ ├── zeeman_spectrum_0deg.png │ │ ├── zeeman_spectrum_45deg.png │ │ └── zeeman_spectrum_90deg.png │ ├── plasmas │ │ ├── analytic_function_plasma.rst │ │ ├── analytic_plasma.png │ │ ├── analytic_plasma_slices.png │ │ ├── beam_attenuation.png │ │ ├── beam_density_xz.png │ │ ├── beam_into_plasma.png │ │ ├── beam_ion_temp.png │ │ ├── beam_neutral_temp.png │ │ ├── beams_into_plasmas.rst │ │ ├── equilibrium.rst │ │ ├── equilibrium_lcfs.png │ │ ├── equilibrium_limiter.png │ │ ├── equilibrium_mapped_te_xy.png │ │ ├── equilibrium_mapped_te_xz.png │ │ ├── equilibrium_surfaces.png │ │ ├── mesh2d_plasma.rst │ │ ├── mesh_for_plasma.png │ │ ├── mesh_plasma_column.png │ │ ├── mesh_plasma_slices.png │ │ ├── slab_plasma.png │ │ ├── slab_plasma.rst │ │ └── slab_plasma_neutrals.png │ ├── radiation_loads │ │ ├── AUG_radiation_load.png │ │ ├── AUG_wall_outline.png │ │ ├── AUG_wall_zoomed.png │ │ ├── radiation_function.png │ │ ├── radiation_function.rst │ │ ├── radiation_function_rz.png │ │ ├── surface_radiation_loads.rst │ │ ├── symmetric_power_load.png │ │ ├── symmetric_power_load.rst │ │ ├── symmetric_power_load_detectors.png │ │ ├── symmetric_power_load_zoomed_detectors.png │ │ ├── toroidal_wall.png │ │ ├── wall_from_polygon.rst │ │ └── wall_radiation.py │ ├── ray_transfer │ │ ├── ray_transfer_box.rst │ │ ├── ray_transfer_box_demo.png │ │ ├── ray_transfer_cylinder.rst │ │ ├── ray_transfer_cylinder_demo.gif │ │ ├── ray_transfer_map.rst │ │ ├── ray_transfer_map_demo.gif │ │ ├── ray_transfer_mask.rst │ │ └── ray_transfer_mask_demo.gif │ └── solps │ │ ├── solps_plasma.rst │ │ ├── species_narrow.png │ │ └── species_wide.png │ ├── figures │ ├── CHERAB_structure.png │ └── CHERAB_structure.svg │ ├── governance.rst │ ├── index.rst │ ├── installation_and_structure.rst │ ├── licence.rst │ ├── math │ ├── caching.rst │ ├── clamp.rst │ ├── function.rst │ ├── interpolators.rst │ ├── mappers.rst │ ├── mask.rst │ ├── math.rst │ ├── samplers.rst │ ├── slice.rst │ └── transform.rst │ ├── models │ ├── basic_line │ │ └── basic_line_emission.rst │ ├── beam │ │ ├── beam_attenuation_calculation.rst │ │ └── beam_attenuator.rst │ ├── bes │ │ └── bes_model.rst │ ├── brem │ │ └── bremsstrahlung.rst │ ├── custom_models.rst │ ├── cxs │ │ ├── atomic_data_calculation.rst │ │ ├── charge_exchange_calculation.rst │ │ └── cxs_model.rst │ ├── emission_models.rst │ ├── laser │ │ └── laser.rst │ ├── line_shapes │ │ └── spectral_line_shapes.rst │ └── radiated_power │ │ └── radiated_power.rst │ ├── plasmas │ ├── beam_direction.png │ ├── core_plasma_classes.rst │ ├── equilibrium.rst │ ├── equilibrium_plot.png │ ├── laser.rst │ ├── particle_beams.rst │ ├── plasma_sources.rst │ └── plasmas.rst │ ├── static │ └── theme_overrides.css │ ├── tools │ ├── materials.rst │ ├── observers.rst │ ├── plasmas.rst │ ├── 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