├── .gitignore ├── .travis.yml ├── LICENSE ├── README.md ├── amplicov ├── amplicov └── amplicov_pdf ├── requirements.txt ├── setup.py └── tests ├── coverage.txt ├── input.bam ├── input.bed ├── input.bedpe ├── input.gff ├── output.html ├── output.txt └── runTest.sh /.gitignore: -------------------------------------------------------------------------------- 1 | build/ 2 | tests/tmpOut 3 | dist 4 | amplicov.egg-info 5 | -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/.travis.yml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/README.md -------------------------------------------------------------------------------- /amplicov/amplicov: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/amplicov/amplicov -------------------------------------------------------------------------------- /amplicov/amplicov_pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/amplicov/amplicov_pdf -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/setup.py -------------------------------------------------------------------------------- /tests/coverage.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/tests/coverage.txt -------------------------------------------------------------------------------- /tests/input.bam: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/tests/input.bam -------------------------------------------------------------------------------- /tests/input.bed: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/tests/input.bed -------------------------------------------------------------------------------- /tests/input.bedpe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/tests/input.bedpe -------------------------------------------------------------------------------- /tests/input.gff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/tests/input.gff -------------------------------------------------------------------------------- /tests/output.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/tests/output.html -------------------------------------------------------------------------------- /tests/output.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/tests/output.txt -------------------------------------------------------------------------------- /tests/runTest.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chienchi/amplicon_coverage_plot/HEAD/tests/runTest.sh --------------------------------------------------------------------------------