├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── rd.R ├── rd.breakpoints.R ├── rd.cnSegments.R ├── rd.functions.R ├── rd.gccorrect.R ├── rd.mapcorrect.R ├── rd.object.R └── zzz.R ├── README.md └── man ├── functions.Rd ├── getAlts.Rd ├── getAnnotations.Rd ├── mergeSegs.Rd ├── plotDist.Rd ├── plotSegs.Rd ├── rd.cnSegments.Rd ├── rd.gcCorrect.Rd ├── rd.mapCorrect.Rd ├── rd.matchBreakpoints.Rd ├── rdObject-class.Rd ├── readDepth-package.Rd ├── readDepth.Rd ├── trimSegmentEnds.Rd ├── writeAlts.Rd ├── writeSegs.Rd └── writeThresholds.Rd /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chrisamiller/readDepth/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/chrisamiller/readDepth/HEAD/LICENSE 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