├── .gitignore ├── Old ├── BookMake.R ├── CoverGraphics │ └── 2ndEditionCover_v1 │ │ ├── index.html │ │ └── main.css ├── EarlyOutline.md ├── README.md ├── Source-v2 │ ├── .gitignore │ ├── Children │ │ ├── Chapter1 │ │ │ ├── chapter1.Rnw │ │ │ └── chapter1.md │ │ ├── Chapter10 │ │ │ ├── chapter10.Rnw │ │ │ └── images10 │ │ │ │ ├── GeoChartScreenshot.png │ │ │ │ ├── HeliconiusMimicry.png │ │ │ │ ├── MarkdownScatterMatrix.png │ │ │ │ └── ShowInBrowser.png │ │ ├── Chapter11 │ │ │ ├── chapter11.Rnw │ │ │ └── images11 │ │ │ │ ├── BeamerExample.png │ │ │ │ ├── CompilePDF.png │ │ │ │ └── TeXFormat.png │ │ ├── Chapter12 │ │ │ ├── chapter12.Rnw │ │ │ └── images12 │ │ │ │ └── BrewExample.png │ │ ├── Chapter13 │ │ │ ├── chapter13.Rnw │ │ │ └── images13 │ │ │ │ ├── CustomCSSExample.png │ │ │ │ ├── KnitHTML.png │ │ │ │ ├── MDButton.png │ │ │ │ ├── MagGlass.png │ │ │ │ ├── MarkdownExampleMap.png │ │ │ │ ├── MorePres.png │ │ │ │ ├── PresentationPane.png │ │ │ │ ├── PreviewButton.png │ │ │ │ ├── rmarkdownBeamerExample.png │ │ │ │ ├── rmarkdownIo_slidesExample.png │ │ │ │ ├── rmarkdownOutputOptions.png │ │ │ │ └── rmarkdownPresRStudio.png │ │ ├── Chapter14 │ │ │ └── chapter14.Rnw │ │ ├── Chapter2 │ │ │ ├── chapter2.Rnw │ │ │ └── images2 │ │ │ │ └── WorkFlowLinks.tex │ │ ├── Chapter3 │ │ │ ├── chapter3.Rnw │ │ │ └── images3 │ │ │ │ ├── BlankMainPanel.png │ │ │ │ ├── BlankRConsole.png │ │ │ │ ├── ChunkNav.png │ │ │ │ ├── ChunksIcon.png │ │ │ │ ├── CompileNotebook.png │ │ │ │ ├── CompilePDF.png │ │ │ │ ├── KnitrProcess.tex │ │ │ │ ├── LaTeXSourceBar.png │ │ │ │ ├── MarkdownCollapse.png │ │ │ │ ├── MarkdownNoCollapse.png │ │ │ │ ├── MarkdownSourceBar.png │ │ │ │ ├── NotebookExample.png │ │ │ │ ├── RSourceBar.png │ │ │ │ ├── RunIcon.png │ │ │ │ └── newRMarkdown.png │ │ ├── Chapter4 │ │ │ ├── chapter4.Rnw │ │ │ └── images4 │ │ │ │ ├── ExampleFilePath.tex │ │ │ │ ├── MoreIcon.png │ │ │ │ ├── MoreMore.png │ │ │ │ ├── ProjectMenu.png │ │ │ │ └── RStudioFiles.png │ │ ├── Chapter5 │ │ │ ├── chapter5.Rnw │ │ │ └── images5 │ │ │ │ ├── BasicGitRepository.png │ │ │ │ ├── BrowseCodeIcon.png │ │ │ │ ├── CommitHistory.png │ │ │ │ ├── CommitsButton.png │ │ │ │ ├── DropboxLink.png │ │ │ │ ├── EditIcon.png │ │ │ │ ├── GitAdd.png │ │ │ │ ├── GitHubReadme.png │ │ │ │ ├── GitMore.png │ │ │ │ ├── GitNewProject.png │ │ │ │ ├── GitTab.png │ │ │ │ ├── NewProject_NewDirectory.png │ │ │ │ ├── NewRepository.png │ │ │ │ └── packratDplyr.png │ │ ├── Chapter6 │ │ │ ├── chapter6.Rnw │ │ │ └── images6 │ │ │ │ ├── BuildTab.png │ │ │ │ ├── DropboxSharePage.png │ │ │ │ └── DropboxURL.png │ │ ├── Chapter7 │ │ │ ├── chapter7.Rnw │ │ │ └── images7 │ │ │ │ ├── ViewerRStudio.png │ │ │ │ └── ViewerX11.png │ │ ├── Chapter8 │ │ │ ├── chapter8.Rnw │ │ │ └── images8 │ │ │ │ ├── BrowseCode.png │ │ │ │ ├── GitHistory.png │ │ │ │ ├── MeanRiverMarkdown.png │ │ │ │ └── PythonRR.png │ │ ├── Chapter9 │ │ │ ├── chapter9.Rnw │ │ │ └── images9 │ │ │ │ ├── BasicKableExample.png │ │ │ │ ├── MarkedCaptionTableExample.png │ │ │ │ ├── MarkedTableExample.png │ │ │ │ ├── RStudioDefaultTableExample.png │ │ │ │ └── htmlregExample.png │ │ └── FrontMatter │ │ │ ├── AdditionalResources │ │ │ ├── AdditionalResources.Rnw │ │ │ └── imagesExamp │ │ │ │ ├── ExampDiagram.tex │ │ │ │ └── FileTree.tex │ │ │ ├── Packages.Rnw │ │ │ ├── Preface.Rnw │ │ │ ├── StylisticConventions.md │ │ │ └── rep-res-PackagesCited.bib │ ├── Rep-Res-Parent.Rnw │ ├── Rep-Res-Parent.toc │ ├── krantz.cls │ └── rep-res-book.bib ├── SourceOld │ ├── Chapter1 │ │ └── chapter1.Rmd │ ├── Chapter10 │ │ └── chapter10.Rmd │ ├── Chapter11 │ │ └── chapter11.Rmd │ ├── Chapter12 │ │ └── chapter12.Rmd │ ├── Chapter13 │ │ └── chapter13.Rmd │ ├── Chapter14 │ │ └── chapter14.Rmd │ ├── Chapter2 │ │ └── chapter2.Rmd │ ├── Chapter3 │ │ └── chapter3.Rmd │ ├── Chapter4 │ │ └── chapter4.Rmd │ ├── Chapter5 │ │ └── chapter5.Rmd │ ├── Chapter6 │ │ └── chapter6.Rmd │ ├── Chapter7 │ │ └── chapter7.Rmd │ ├── Chapter8 │ │ └── chapter8.Rmd │ └── Chapter9 │ │ └── chapter9.Rmd └── Writing_Setup │ ├── Early_Book_Origins.md │ ├── HeaderFooter │ ├── IndvChapterFoot.tex │ └── IndvChapterHead.tex │ ├── IndvChapter.sh │ ├── IndvChapter1.Rnw │ ├── OldScripts │ ├── ConvertRmdtoRnw.sh │ └── Rmd_Book.sh │ ├── ProductionNotes.md │ ├── Rnw_Book.sh │ └── TableofContentPDF │ ├── GandrudRep-Res-Book-TOC.fdb_latexmk │ ├── GandrudRep-Res-Book-TOC.pdf │ ├── GandrudRep-Res-Book-TOC.tex │ └── krantz.cls ├── README.Rmd ├── README.md ├── img └── re-res-book-cover-3rd.png └── rep-res-3rd-edition ├── .gitignore ├── 01-author.Rmd ├── 01-stylistic-conventions.Rmd ├── 02-additional-resources.Rmd ├── 03-introduction.Rmd ├── 04-getting-started.Rmd ├── 05-start-R.Rmd ├── 06-file-management.Rmd ├── 07-storage.Rmd ├── 08-gather.Rmd ├── 09-clean.Rmd ├── 10-modeling.Rmd ├── 11-tables.Rmd ├── 12-figures.Rmd ├── 13-latex.Rmd ├── 14-web.Rmd ├── 16-conclusion.Rmd ├── 99-references.Rmd ├── LICENSE ├── README.md ├── _bookdown.yml ├── _output.yml ├── book.bib ├── css └── style.css ├── images ├── chapter_10 │ ├── GeoChartScreenshot.png │ ├── HeliconiusMimicry.png │ ├── MarkdownScatterMatrix.png │ └── ShowInBrowser.png ├── chapter_11 │ ├── BeamerExample copy.pdf │ ├── BeamerExample.png │ ├── CompilePDF.png │ └── TeXFormat.png ├── chapter_3 │ ├── BlankRConsole.png │ ├── CompileNotebook.png │ ├── MarkdownSourceBar.png │ ├── NotebookExample.png │ ├── RSourceBar.png │ ├── RStudioStartup.png │ ├── RmarkdownInteractive.png │ ├── SourcePaneRmarkdown.png │ └── newRMarkdown.png ├── chapter_4 │ ├── MoreMore.png │ ├── ProjectMenu.png │ └── RStudioFiles.png ├── chapter_5 │ ├── BasicGitRepository.png │ ├── BrowseCodeIcon.png │ ├── CommitHistory.png │ ├── CommitsButton.png │ ├── DropboxLink.png │ ├── EditIcon.png │ ├── GitAdd.png │ ├── GitHubReadme.png │ ├── GitMore.png │ ├── GitNewProject.png │ ├── GitTab.png │ ├── NewProject_NewDirectory.png │ ├── NewRepository.png │ └── packratDplyr.png ├── chapter_6 │ └── BuildTab.png ├── chapter_8 │ ├── BrowseCode.png │ ├── Ch8SourceURLExample.pdf │ ├── GitHistory.png │ ├── MeanRiverMarkdown.png │ └── PythonRR.png ├── chapter_9 │ ├── BasicKableExample.png │ ├── MarkedCaptionTableExample.png │ ├── MarkedTableExample.png │ ├── RStudioDefaultTableExample.png │ └── htmlregExample.png └── chapter_web │ ├── CustomCSSExample.png │ ├── KnitHTML.png │ ├── MDButton.png │ ├── MagGlass.png │ ├── MarkdownExampleMap.png │ ├── MorePres.png │ ├── PresentationPane.png │ ├── PreviewButton.png │ ├── rmarkdownBeamerExample.png │ ├── rmarkdownIo_slidesExample.png │ ├── rmarkdownOutputOptions.png │ └── rmarkdownPresRStudio.png ├── index.Rmd ├── krantz.cls ├── latex ├── after_body.tex ├── before_body.tex └── preamble.tex ├── packages.bib └── rep-res-3rd-edition.Rproj /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/christophergandrud/Rep-Res-Book/HEAD/.gitignore -------------------------------------------------------------------------------- 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