├── .editorconfig ├── .github └── ISSUE_TEMPLATE.md ├── .gitignore ├── .travis.yml ├── AUTHORS.rst ├── CONTRIBUTING.rst ├── HISTORY.rst ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.rst ├── docs ├── Makefile ├── authors.rst ├── conf.py ├── contributing.rst ├── github_front.png ├── history.rst ├── index.rst ├── installation.rst ├── make.bat ├── readme.rst └── usage.rst ├── requirements_dev.txt ├── scbase ├── __init__.py ├── cli.py ├── scbase.py ├── stan │ ├── bb.stan │ ├── pg.stan │ ├── zipg.stan │ └── zoibb.stan └── utils.py ├── scripts └── run_mcmc_on_cluster.sh ├── setup.cfg ├── setup.py ├── tests ├── __init__.py └── test_scbase.py └── tox.ini /.editorconfig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/churchill-lab/scBASE/HEAD/.editorconfig -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE.md: 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