├── @transimg ├── addlayer.m ├── any2ascii.m ├── delete.m ├── dellayer.m ├── display.m ├── handle.m ├── joinlayers.m ├── private │ └── ti_renderlayer.m ├── render.m ├── setbackground.m ├── sethandle.m ├── setlayer.m ├── setlayeralpha.m ├── setlayerpixel.m ├── setlayertrans.m ├── subsref.m └── transimg.m ├── @transio ├── any2ascii.m ├── buffer.m ├── cat.m ├── class.m ├── datatype.m ├── display.m ├── double.m ├── end.m ├── eq.m ├── filename.m ├── ge.m ├── gt.m ├── horzcat.m ├── isempty.m ├── isinf.m ├── isnan.m ├── isnumeric.m ├── isreal.m ├── le.m ├── littleendian.m ├── lt.m ├── minus.m ├── mpower.m ├── mrdivide.m ├── mtimes.m ├── ndims.m ├── ne.m ├── numel.m ├── offset.m ├── plus.m ├── power.m ├── private │ └── ioidx.m ├── rdivide.m ├── reshape.m ├── resolve.m ├── single.m ├── size.m ├── subsasgn.m ├── subsref.m ├── times.m ├── transio.m └── vertcat.m ├── @xff ├── Call.m ├── any2ascii.m ├── bless.m ├── clear.m ├── delete.m ├── display.m ├── eq.m ├── fieldnames.m ├── filename.m ├── filetype.m ├── get.m ├── getcont.m ├── getscont.m ├── handles.m ├── help.m ├── isfield.m ├── loadobj.m ├── methods.m ├── ndims.m ├── ne.m ├── new.m ├── objectid.m ├── private │ ├── acq_ChannelData.m │ ├── acq_Filter.m │ ├── acq_Resample.m │ ├── acq_SampleData.m │ ├── aft_AddToCleanUp.m │ ├── aft_BoundingBox.m │ ├── aft_Browse.m │ ├── aft_ClearObject.m │ ├── aft_ClusterTable.m │ ├── aft_ConvertToNLF.m │ ├── aft_CopyObject.m │ ├── aft_Coregister.m │ ├── aft_CreateSMP.m │ ├── aft_DeleteHandle.m │ ├── aft_ExportNifti.m │ ├── aft_FilenameOnDisk.m │ ├── aft_Filenumber.m │ ├── aft_Filetype.m │ ├── aft_GetVolume.m │ ├── aft_GetVolumeSize.m │ ├── aft_Handles.m │ ├── aft_Help.m │ ├── aft_Info.m │ ├── aft_IntensityMask.m │ ├── aft_Layout.m │ ├── aft_LoadTransIOData.m │ ├── aft_MapNames.m │ ├── aft_MaskWithMSK.m │ ├── aft_MaskWithVMR.m │ ├── aft_RSA.m │ ├── aft_ReloadFromDisk.m │ ├── aft_RemoveEntries.m │ ├── aft_RenderToTransimg.m │ ├── aft_SampleBVBox.m │ ├── aft_SampleData3D.m │ ├── aft_SampleTalBox.m │ ├── aft_Save.m │ ├── aft_SaveAs.m │ ├── aft_SaveRunTimeVars.m │ ├── aft_SetColors.m │ ├── aft_SetHandle.m │ ├── aft_SetOrientation.m │ ├── aft_SetScalingWindow.m │ ├── aft_SliceData3D.m │ ├── aft_SliceToTransimg.m │ ├── aft_SmoothData3D.m │ ├── aft_TempMahalanobis.m │ ├── aft_TimeCourseCorr.m │ ├── aft_UnBrowse.m │ ├── aft_VOITimeCourse.m │ ├── aft_fMRIWeights.m │ ├── amr_InterpolateTo256x256.m │ ├── avg_Average.m │ ├── avg_Plot.m │ ├── bffdocu.m │ ├── bffio.m │ ├── bffparse.m │ ├── bvx_GetVar.m │ ├── cmp_AddComponent.m │ ├── cmp_SaveAsMAPs.m │ ├── dcm_PixelData.m │ ├── dcm_Value.m │ ├── dcmio.m │ ├── dicom_vr.m │ ├── dmr_CoordinateFrame.m │ ├── dmr_LoadDWI.m │ ├── dmr_MaskWithVMR.m │ ├── dmr_SaveDWI.m │ ├── dmr_Write4DNifti.m │ ├── dtsf_SaveAsFBR.m │ ├── fbr_CreateVMR.m │ ├── fif_CreateCTC.m │ ├── fif_FreeElements.m │ ├── fif_LoadChannelData.m │ ├── fif_ReadElements.m │ ├── fif_ReadInfoHeaders.m │ ├── fif_Value.m │ ├── fif_WritePOS.m │ ├── fif_WriteSFH.m │ ├── fifio.m │ ├── fmr_ConvertToDMR.m │ ├── fmr_CoordinateFrame.m │ ├── fmr_CreateAMR.m │ ├── fmr_CreatePseudoVMR.m │ ├── fmr_CrossCorrelate.m │ ├── fmr_Filter.m │ ├── fmr_GenerateSTC.m │ ├── fmr_GlobalTC.m │ ├── fmr_ICA.m │ ├── fmr_LoadSTC.m │ ├── fmr_MaskFromPseudoVMR.m │ ├── fmr_Preprocess.m │ ├── fmr_Realign.m │ ├── fmr_ReorderSlices.m │ ├── fmr_Resample.m │ ├── fmr_SaveSTC.m │ ├── fmr_SliceTiming.m │ ├── fmr_Write4DNifti.m │ ├── fmr_WriteAnalyzeSeries.m │ ├── fmr_WriteAnalyzeVol.m │ ├── fsbf_SaveAsSRF.m │ ├── glm_Anova.m │ ├── glm_ClusterBetas.m │ ├── glm_ConvertToVMP.m │ ├── glm_FFX_tMap.m │ ├── glm_FillMissingVertices.m │ ├── glm_GenerateMDM.m │ ├── glm_JoinFFX.m │ ├── glm_JoinRFX.m │ ├── glm_PSCMaps.m │ ├── glm_PlotBetas.m │ ├── glm_RFX_RemovePredictors.m │ ├── glm_RFX_StatsMap.m │ ├── glm_RFX_conmaps.m │ ├── glm_RFX_rMap.m │ ├── glm_RFX_tMap.m │ ├── glm_RemoveSubject.m │ ├── glm_ReorderPredictors.m │ ├── glm_SingleTrialAnalysis.m │ ├── glm_SubjectPredictors.m │ ├── glm_Subjects.m │ ├── glm_VOIBetas.m │ ├── glm_VOICorrelations.m │ ├── glm_WriteAnalyzeBetas.m │ ├── glm_WriteAnalyzeVols.m │ ├── hdr_CoordinateFrame.m │ ├── hdr_DTITrackEVs.m │ ├── hdr_Dyn3DToDMR.m │ ├── hdr_Dyn3DToFMR.m │ ├── hdr_Dyn3DToVTC.m │ ├── hdr_InhomogeneityCorrect.m │ ├── hdr_LoadVoxelData.m │ ├── hdr_NrOfVolumes.m │ ├── hdr_SaveVoxelData.m │ ├── hdr_SetObliqueSlicing.m │ ├── hdr_SliceTiming.m │ ├── hdr_UpdateHeader.m │ ├── head_CoordinateFrame.m │ ├── map_CreateVMP.m │ ├── map_WriteAnalyzeVol.m │ ├── mat_ChannelData.m │ ├── mat_Filter.m │ ├── mat_Resample.m │ ├── mat_SampleData.m │ ├── mdm_CheckFiles.m │ ├── mdm_ComputeGLM.m │ ├── mdm_ComputeVOIGLM.m │ ├── mdm_ConditionOnsets.m │ ├── mdm_GSRSquared.m │ ├── mdm_POITimeCourses.m │ ├── mdm_SDMs.m │ ├── mdm_Subjects.m │ ├── mdm_VOICondAverage.m │ ├── mdm_VOITimeCourses.m │ ├── mdm_VTCCondAverage.m │ ├── msk_ApplyTo.m │ ├── msk_Coords.m │ ├── mtc_ApplySSM.m │ ├── mtc_ApplyTSM.m │ ├── mtc_CreateGLM.m │ ├── mtc_Resample.m │ ├── mtc_SmoothIterativeNN.m │ ├── mtc_SmoothnessSMP.m │ ├── nlf_CoordinateFrame.m │ ├── ntt_ChannelData.m │ ├── ntt_CleanupStimChannel.m │ ├── ntt_ERATimeCourse.m │ ├── ntt_Filter.m │ ├── ntt_Resample.m │ ├── ntt_SampleData.m │ ├── pfs_DirList.m │ ├── pfs_GetAllProperties.m │ ├── pfs_GetPropertyNr.m │ ├── pfs_LocateProperty.m │ ├── plp_AddColumn.m │ ├── plp_CPointsAtCoord.m │ ├── plp_ClusterColorSize.m │ ├── plp_MKDA.m │ ├── plp_PlotOnSlice.m │ ├── plp_PlotOnSurface.m │ ├── plp_ReduceToMKDAMask.m │ ├── plp_Select.m │ ├── plp_TDDLabelGM.m │ ├── pmp_Sample.m │ ├── poi_Area.m │ ├── poi_POINames.m │ ├── prt_AddCond.m │ ├── prt_AddRest.m │ ├── prt_CleanUp.m │ ├── prt_Collapse.m │ ├── prt_Concatenate.m │ ├── prt_ConditionNames.m │ ├── prt_ConvertToMS.m │ ├── prt_ConvertToSingleTrial.m │ ├── prt_ConvertToVol.m │ ├── prt_CreateSDM.m │ ├── prt_ImportStimChannels.m │ ├── prt_RemodelISIs.m │ ├── prt_SaveRegressorFiles.m │ ├── prt_SaveSPMConditionMAT.m │ ├── prt_SetDuration.m │ ├── prt_ShiftOnsets.m │ ├── prt_ShuffleLabels.m │ ├── root_ClearObjects.m │ ├── root_Document.m │ ├── root_Documents.m │ ├── root_Help.m │ ├── root_New.m │ ├── sdm_AddFilters.m │ ├── sdm_CalcBetas.m │ ├── sdm_Concatenate.m │ ├── sdm_EstimateCondOnOffsets.m │ ├── sdm_PPI.m │ ├── sdm_ShowDesign.m │ ├── smp_ApplyTSM.m │ ├── smp_ClusterTable.m │ ├── smp_Combine.m │ ├── smp_ComputeFormula.m │ ├── smp_CreatePMP.m │ ├── smp_Smooth.m │ ├── smp_SplitCCRetinoMap.m │ ├── spss_ImportData.m │ ├── srf_AddBitmap.m │ ├── srf_AddDipoles.m │ ├── srf_AddMarkers.m │ ├── srf_AddSurfacePoints.m │ ├── srf_ApplySPMsn.m │ ├── srf_ApplySSM.m │ ├── srf_ApplyTSM.m │ ├── srf_Area.m │ ├── srf_BackToVMR.m │ ├── srf_BadVoxelVOI.m │ ├── srf_Combine.m │ ├── srf_CreateVMVfromMTC.m │ ├── srf_CreateVMVfromSMP.m │ ├── srf_CurvatureColor.m │ ├── srf_CurvatureMap.m │ ├── srf_DensityMap.m │ ├── srf_FindSpikes.m │ ├── srf_Inflate.m │ ├── srf_MarkPOI.m │ ├── srf_MarkSpikes.m │ ├── srf_Morph.m │ ├── srf_MorphTo.m │ ├── srf_NeighborsNDegree.m │ ├── srf_RecalcNormals.m │ ├── srf_RecoSMToSphere.m │ ├── srf_RecoToSphere.m │ ├── srf_Reduce.m │ ├── srf_SaveAsBYU.m │ ├── srf_SaveAsJVX.m │ ├── srf_SaveAsPLY.m │ ├── srf_SaveAsVTK.m │ ├── srf_SelectFibers.m │ ├── srf_SetCoordsTriangles.m │ ├── srf_Show.m │ ├── srf_ShrinkSpikes.m │ ├── srf_Smooth.m │ ├── srf_SphereToSphereMapCoord.m │ ├── srf_SphereToSphereMapTri.m │ ├── srf_SpreadColor.m │ ├── srf_ToSphere.m │ ├── srf_Transform.m │ ├── srf_TrianglesToNeighbors.m │ ├── srf_UnfoldSmooth.m │ ├── srf_UpdateNeighbors.m │ ├── tffdocu.m │ ├── tffio.m │ ├── tffparse.m │ ├── uff_ReadFile.m │ ├── vmp_AddConjunctionMap.m │ ├── vmp_ClusterROIs.m │ ├── vmp_ComputeFormula.m │ ├── vmp_ConvertToNatRes.m │ ├── vmp_ConvertToVTC.m │ ├── vmp_CorrelateMapsWithVOI.m │ ├── vmp_CreateMSK.m │ ├── vmp_ImportSPMMaps.m │ ├── vmp_MakeHiResVMP.m │ ├── vmp_PerformFDR.m │ ├── vmp_SaveAsVMR.m │ ├── vmp_SaveSubset.m │ ├── vmp_Update.m │ ├── vmp_VoxelStats.m │ ├── vmp_WriteAnalyzeVol.m │ ├── vmr_ApplyTRF.m │ ├── vmr_CleanVMR.m │ ├── vmr_CoordinateFrame.m │ ├── vmr_CreateVTC.m │ ├── vmr_DBReco.m │ ├── vmr_GradientVMR.m │ ├── vmr_HiResRescale.m │ ├── vmr_InhomogeneityCorrect.m │ ├── vmr_LimitVMR.m │ ├── vmr_LoResRescale.m │ ├── vmr_LoadV16.m │ ├── vmr_MarkWhiteMatter.m │ ├── vmr_MaskWithVMR.m │ ├── vmr_MinBox.m │ ├── vmr_OverlaySRF.m │ ├── vmr_OverlayVMP.m │ ├── vmr_PeelBrain.m │ ├── vmr_PrepareForReco.m │ ├── vmr_Reframe.m │ ├── vmr_SaveV16.m │ ├── vmr_SetConvention.m │ ├── vmr_Talairach.m │ ├── vmr_Update.m │ ├── vmr_WriteAnalyzeVol.m │ ├── voi_AddSphericalVOI.m │ ├── voi_ApplyTrf.m │ ├── voi_BVCoords.m │ ├── voi_Combine.m │ ├── voi_CreateMSK.m │ ├── voi_Details.m │ ├── voi_ImportClusters.m │ ├── voi_SortCoords.m │ ├── voi_SystemCoords.m │ ├── voi_TalCoords.m │ ├── voi_ToISO.m │ ├── voi_VOINames.m │ ├── vtc_AverageMovieVMP.m │ ├── vtc_AveragePeak.m │ ├── vtc_CombineAvgTCs.m │ ├── vtc_Correlate.m │ ├── vtc_CreateFuncVMR.m │ ├── vtc_CreateGLM.m │ ├── vtc_CreateMTC.m │ ├── vtc_CrossCorrelate.m │ ├── vtc_Filter.m │ ├── vtc_ICA.m │ ├── vtc_JoinAvgTCs.m │ ├── vtc_MeanSRFTimeCourse.m │ ├── vtc_MeanStd.m │ ├── vtc_MinFrame.m │ ├── vtc_Reframe.m │ ├── vtc_RegressOut.m │ ├── vtc_Resample.m │ ├── vtc_Update.m │ ├── vtc_VOITimeCourseOrig.m │ ├── vtc_Write4DNifti.m │ ├── vtc_WriteAnalyzeSeries.m │ ├── vtc_WriteAnalyzeVol.m │ ├── vtk_ConvertToSRF.m │ ├── vvd_CalcROIBetas.m │ ├── xffclear.m │ ├── xffdetectmagic.m │ ├── xffdtsfparsefibers.m │ ├── xffdtsfwritefibers.m │ ├── xffformats.m │ ├── xffgetcont.m │ ├── xffgetscont.m │ ├── xffisobject.m │ ├── xffmethods.m │ ├── xffrequestfile.m │ ├── xffsetcont.m │ ├── xffsetscont.m │ └── xffunwindstack.m ├── saveobj.m ├── setcont.m ├── size.m ├── subsasgn.m ├── subsref.m └── xff.m ├── @xfigure ├── any2ascii.m ├── display.m ├── fieldnames.m ├── methods.m ├── mlhandle.m ├── mstring.m ├── subsasgn.m ├── subsref.m └── xfigure.m ├── @xini ├── display.m ├── fieldnames.m ├── methods.m ├── subsasgn.m ├── subsref.m └── xini.m ├── @xprogress ├── closebar.m ├── subsasgn.m ├── subsref.m └── xprogress.m ├── BVQXfile.m ├── Contents.m ├── LICENSE ├── NeuroElf.m ├── README.md ├── _core ├── config │ ├── colin27fileorder.txt │ ├── freesurfer.ini │ ├── neuroelf.ini │ ├── neuroelf_clean.ini │ ├── spmx_prepro.ini │ ├── study.ini │ └── xff.ini ├── dicom │ ├── OFFIS │ │ ├── COPYRIGHT │ │ ├── dicom.dic │ │ └── dicom.old │ ├── Philips_Achieva │ │ └── dicom.dic │ ├── Philips_Intera │ │ └── dicom.dic │ └── combined.lst ├── formats │ ├── ACQ.bff │ ├── ADS.tff │ ├── AMR.bff │ ├── ATD.tff │ ├── AVA.bff │ ├── AVG.tff │ ├── AVGD.tff │ ├── AVGT.tff │ ├── BSA.tff │ ├── BVX.bff │ ├── CCC.bff │ ├── CDD.tff │ ├── CMP.bff │ ├── COV.tff │ ├── CPS.tff │ ├── CTC.bff │ ├── CTR.tff │ ├── CVX.bff │ ├── DCM.bff │ ├── DDT.bff │ ├── DMR.tff │ ├── DTA.bff │ ├── DTSF.bff │ ├── DWI.bff │ ├── EIG.bff │ ├── EPF.tff │ ├── FBR.tff │ ├── FDP.tff │ ├── FIF.bff │ ├── FMR.tff │ ├── FSBF.bff │ ├── G2G.bff │ ├── GAL.tff │ ├── GLM.bff │ ├── GRAD.tff │ ├── GRB.tff │ ├── HDR.bff │ ├── HEAD.tff │ ├── IDF._bff_ │ ├── MAP.bff │ ├── MAT.bff │ ├── MDM.tff │ ├── MGH.bff │ ├── MSK.bff │ ├── MTC.bff │ ├── MVA.tff │ ├── MVP.tff │ ├── NLF.bff │ ├── NTT.bff │ ├── OLT.tff │ ├── PFS.bff │ ├── PLP.tff │ ├── PLYA.tff │ ├── PMP.bff │ ├── POI.tff │ ├── POID.tff │ ├── POS.tff │ ├── PRT.tff │ ├── ROID.tff │ ├── ROOT.bff │ ├── SASC.tff │ ├── SDM.tff │ ├── SFH.tff │ ├── SMP.bff │ ├── SPSS.bff │ ├── SRF.bff │ ├── SSM.bff │ ├── STC.bff │ ├── TAL.tff │ ├── TDMC.tff │ ├── TFD.bff │ ├── TMV.tff │ ├── TRF.tff │ ├── TSM.bff │ ├── TVL.bff │ ├── UFF.tff │ ├── VDW.bff │ ├── VGD.tff │ ├── VMP.bff │ ├── VMR.bff │ ├── VMV.bff │ ├── VOI.tff │ ├── VOID.tff │ ├── VOIL.tff │ ├── VOM.tff │ ├── VTC.bff │ ├── VTK.bff │ ├── VVD.tff │ └── VWP.tff ├── icons │ ├── -1.tif │ ├── 0.tif │ ├── 1.tif │ ├── and.tif │ ├── atl.tif │ ├── back.tif │ ├── balance.tif │ ├── bars.tif │ ├── bordq.tif │ ├── c.tif │ ├── cb.tif │ ├── chair.tif │ ├── cor.tif │ ├── ddown.tif │ ├── disk.tif │ ├── down.tif │ ├── dup.tif │ ├── ellipse.tif │ ├── f.tif │ ├── flood.tif │ ├── folder.tif │ ├── gotor.tif │ ├── hdown.tif │ ├── hmesh.tif │ ├── hup.tif │ ├── ico.tif │ ├── info.tif │ ├── invmsk.tif │ ├── isrf.tif │ ├── ixx.tif │ ├── left.tif │ ├── link.tif │ ├── maxi.tif │ ├── mini.tif │ ├── minus.tif │ ├── mroi.tif │ ├── mskvmr.tif │ ├── msrf.tif │ ├── nsph.tif │ ├── or.tif │ ├── ortho.tif │ ├── paint.tif │ ├── paint3.tif │ ├── paintu.tif │ ├── paren.tif │ ├── persp.tif │ ├── plot.tif │ ├── plus.tif │ ├── props.tif │ ├── reload.tif │ ├── remote.tif │ ├── rend.tif │ ├── right.tif │ ├── roi.tif │ ├── sag.tif │ ├── sct.tif │ ├── smooa.tif │ ├── smoob.tif │ ├── smoos.tif │ ├── smoost.tif │ ├── smp.tif │ ├── sphere.tif │ ├── ssrf.tif │ ├── stop.tif │ ├── surf.tif │ ├── table.tif │ ├── tick.tif │ ├── tra.tif │ ├── trans.tif │ ├── trash.tif │ ├── ulay.tif │ ├── undock.tif │ ├── up.tif │ ├── v16.tif │ ├── xpand.tif │ ├── xparen.tif │ ├── xval.tif │ └── zoom.tif ├── lut │ ├── Standard.olt │ ├── Standard_extended.olt │ ├── cool.olt │ ├── grey.olt │ ├── hot.olt │ ├── matlab_hot.olt │ ├── matlab_hot_extended.olt │ ├── matlab_winter.olt │ ├── polar_left_hemi_red_gradient.olt │ ├── polar_right_hemi_red_gradient.olt │ ├── prob_map_blue.olt │ ├── prob_map_green_1.olt │ ├── prob_map_green_2.olt │ ├── prob_map_green_circular.olt │ ├── prob_map_red.olt │ ├── reversed.olt │ ├── reversed_extended.olt │ ├── thickness_1.olt │ ├── thickness_2.olt │ └── thickness_3.olt ├── splash │ ├── curve.jpg │ ├── render.jpg │ ├── slice.jpg │ ├── surf.jpg │ ├── text1.png │ ├── text2.jpg │ └── text3.jpg └── tfg │ ├── colorpicker.tfg │ ├── heartbeats_cleanup.tfg │ ├── importrfxglmfromspms.tfg │ ├── ne_averagenii.tfg │ ├── ne_glmbetaplot.tfg │ ├── ne_glmcontrasts.tfg │ ├── ne_mdmcondavg.tfg │ ├── ne_mdmconfig.tfg │ ├── ne_mkda.tfg │ ├── ne_physio.tfg │ ├── ne_render.tfg │ ├── ne_rfxmediation.tfg │ ├── ne_satellite.tfg │ ├── ne_vismontage.tfg │ ├── neuroelf.tfg │ ├── plotcurves.tfg │ ├── renamedicom.tfg │ ├── setorient.tfg │ ├── splash.tfg │ ├── spmx_preprojobs.tfg │ └── tdclient.tfg ├── _files ├── _todo │ ├── IL │ │ ├── Anneal_Logit.m │ │ ├── Det_Logit.m │ │ ├── Example.m │ │ ├── Example2_noise_var.m │ │ ├── Fit_Canonical_HRF.m │ │ ├── Fit_Logit.m │ │ ├── Fit_sFIR.m │ │ ├── Get_Logit.m │ │ ├── Get_parameters_Logit.m │ │ ├── Inverse_Logit_Tool_Instructions.rtf │ │ ├── PowerLoss.m │ │ ├── ResidScan.m │ │ ├── ScanSim4.m │ │ ├── cost.m │ │ ├── cost2.m │ │ ├── dilogit_dt2.m │ │ ├── get_parameters2.m │ │ ├── ilogit.m │ │ ├── markovrw.png │ │ └── timecourse.mat │ ├── anova │ │ ├── BWAOV2.m │ │ ├── RMAOV1MS.m │ │ ├── RMAOV31.m │ │ ├── RMAOV32.m │ │ ├── RMAOV33.m │ │ ├── RMA_license.txt │ │ └── mixed_between_within_anova.m │ ├── aoslst │ │ ├── AOSLevelsetSegmentationToolboxM │ │ │ ├── Readme.txt │ │ │ ├── ac_ChanVese_model.m │ │ │ ├── ac_GAC_model.m │ │ │ ├── ac_SDF_2D.m │ │ │ ├── ac_curvature_flow_AOS.m │ │ │ ├── ac_div_AOS.m │ │ │ ├── ac_gaussian_kernel.m │ │ │ ├── ac_gradient_map.m │ │ │ ├── ac_hybrid_model.m │ │ │ ├── ac_laplacian_AOS.m │ │ │ ├── ac_linear_diffusion_AOS.m │ │ │ ├── ac_reinit.m │ │ │ ├── data │ │ │ │ ├── europe_night.jpg │ │ │ │ └── shou.jpg │ │ │ ├── mex │ │ │ │ ├── BinaryHeap.h │ │ │ │ ├── ac_distance_transform_3d.cpp │ │ │ │ ├── ac_div_AOS_3D_dll.cpp │ │ │ │ ├── ac_linear_diffusion_AOS_2D_dll.cpp │ │ │ │ ├── ac_linear_diffusion_AOS_3D_dll.cpp │ │ │ │ ├── ac_tridiagonal_Thomas_dll.cpp │ │ │ │ ├── compile_mex_codes.m │ │ │ │ └── zy_binary_boundary_detection.c │ │ │ ├── private │ │ │ │ ├── ac_distance_transform_3d.mexmaci64 │ │ │ │ ├── ac_div_AOS_1D.m │ │ │ │ ├── ac_div_AOS_2D.m │ │ │ │ ├── ac_div_AOS_3D.m │ │ │ │ ├── ac_div_AOS_3D_dll.mexmaci64 │ │ │ │ ├── ac_linear_diffusion_AOS_2D_dll.mexmaci64 │ │ │ │ ├── ac_linear_diffusion_AOS_3D_dll.mexmaci64 │ │ │ │ ├── ac_tridiagonal_Thomas.m │ │ │ │ ├── ac_tridiagonal_Thomas_dll.mexmaci64 │ │ │ │ ├── zy_binary_boundary_detection.mexmaci64 │ │ │ │ └── zy_extract_pt_from_contours.m │ │ │ ├── test_ChanVese_model_3d.m │ │ │ ├── test_hybrid_model_3d.m │ │ │ └── zy_plot_contours.m │ │ └── license.txt │ ├── brain_rebox.m │ ├── dartel_create_template1mm_7its.mat │ ├── dartel_import_1mm.mat │ ├── dtiprocess.sh │ ├── dtisearch │ │ ├── DICOMViewer.fig │ │ ├── DICOMViewer.m │ │ ├── DiffusionTensorCalculation.m │ │ ├── DtiSearch.asv │ │ ├── DtiSearch.fig │ │ ├── DtiSearch.m │ │ ├── ROI_statistics.m │ │ ├── ROI_statistics_Export.m │ │ ├── ROI_statistics_showprofile.m │ │ ├── Read Me.txt │ │ ├── Tractography_STT_Euler.m │ │ ├── actxlicense.m │ │ ├── auto_arrange.m │ │ ├── choose_slices.m │ │ ├── double_arrow.m │ │ ├── roi_free.m │ │ ├── roi_oval.m │ │ ├── roi_poly.m │ │ ├── roi_rect.m │ │ ├── slice_marker_horizontal.m │ │ └── slice_marker_vertical.m │ ├── flexinterpnw.c │ ├── flink │ │ ├── ezSPM_Figure.m │ │ ├── ezSPM_Preprocess.fln │ │ ├── ezSPM_Preprocess.tfg │ │ ├── ezSPM_SPMdefaults.ini │ │ └── ezSPM_epipp.ini │ ├── fmristat │ │ ├── BrikInfo.m │ │ ├── BrikInfo_SectionValue.m │ │ ├── XC.m │ │ ├── blob_brain.m │ │ ├── conf_region.m │ │ ├── conjunction.m │ │ ├── dlm.m │ │ ├── efficiency.m │ │ ├── example.m │ │ ├── example_afni.m │ │ ├── example_nifti.m │ │ ├── example_pet.m │ │ ├── extract.m │ │ ├── fdr_threshold.m │ │ ├── fileparts2.m │ │ ├── fmri_interp.m │ │ ├── fmri_mask_thresh.m │ │ ├── fmridesign.m │ │ ├── fmrilm.m │ │ ├── fmris_read_afni.m │ │ ├── fmris_read_analyze.m │ │ ├── fmris_read_image.m │ │ ├── fmris_read_minc.m │ │ ├── fmris_read_nifti.m │ │ ├── fmris_write_afni.m │ │ ├── fmris_write_analyze.m │ │ ├── fmris_write_image.m │ │ ├── fmris_write_minc.m │ │ ├── fmris_write_nifti.m │ │ ├── gauss_blur.m │ │ ├── glass_brain.m │ │ ├── intrinsicvol.m │ │ ├── locmax.m │ │ ├── mask_mesh.m │ │ ├── mask_resels.m │ │ ├── mask_vol.m │ │ ├── math_vol.m │ │ ├── mesh_tet.m │ │ ├── multistat.m │ │ ├── normalize.m │ │ ├── pca_image.m │ │ ├── plot_vol.m │ │ ├── spectral.m │ │ ├── stat_summary.m │ │ ├── stat_threshold.m │ │ ├── tet_curv.m │ │ ├── view_slices.m │ │ ├── view_slices2.m │ │ └── vol2exp.m │ ├── imageedit.tfg │ ├── relabelnulltest.m │ ├── renderpatch │ │ ├── example1_texture.m │ │ ├── example2_isosurface.m │ │ ├── example3_shadow.m │ │ ├── lena.jpg │ │ ├── license.txt │ │ ├── orig │ │ │ ├── example1_texture.m │ │ │ ├── example2_isosurface.m │ │ │ ├── example3_shadow.m │ │ │ ├── lena.jpg │ │ │ ├── license.txt │ │ │ ├── patchnormals.m │ │ │ ├── patchnormals_double.c │ │ │ ├── patchnormals_double.m │ │ │ ├── patchshadowvolume.cpp │ │ │ ├── patchshadowvolume.m │ │ │ ├── read_wobj.m │ │ │ ├── rendergui.fig │ │ │ ├── rendergui.m │ │ │ ├── renderpatch.cpp │ │ │ ├── renderpatch.m │ │ │ ├── renderpatch_face.cpp │ │ │ ├── renderpatch_fragment.cpp │ │ │ ├── renderpatch_mesh.cpp │ │ │ ├── renderpatch_renderimage.cpp │ │ │ ├── renderpatch_scene.cpp │ │ │ ├── renderpatch_shading.cpp │ │ │ ├── renderpatch_texture.cpp │ │ │ ├── renderpatch_transformation.cpp │ │ │ ├── renderpatch_vertice.cpp │ │ │ ├── sphere.mat │ │ │ └── transformmatrix.m │ │ ├── patchnormals.m │ │ ├── patchnormals_double.c │ │ ├── patchnormals_double.m │ │ ├── patchnormals_double.mexmaci64 │ │ ├── patchshadowvolume.cpp │ │ ├── patchshadowvolume.m │ │ ├── patchshadowvolume.mexmaci64 │ │ ├── read_wobj.m │ │ ├── rendergui.fig │ │ ├── rendergui.m │ │ ├── renderpatch.cpp │ │ ├── renderpatch.m │ │ ├── renderpatch.mexmaci64 │ │ ├── renderpatch_face.cpp │ │ ├── renderpatch_fragment.cpp │ │ ├── renderpatch_mesh.cpp │ │ ├── renderpatch_renderimage.cpp │ │ ├── renderpatch_scene.cpp │ │ ├── renderpatch_shading.cpp │ │ ├── renderpatch_texture.cpp │ │ ├── renderpatch_transformation.cpp │ │ ├── renderpatch_vertice.cpp │ │ ├── sphere.mat │ │ └── transformmatrix.m │ ├── smooth_coreg_segment.mat │ └── smooth_coreg_segment_brainextract.mat ├── cache │ └── PLEASE_DO_NOT_DELETE_THIS_FOLDER ├── colin │ ├── ACPC.tal │ ├── ACPC.trf │ ├── afni_inv_sn.mat │ ├── afni_sn.mat │ ├── brain_seg_inv_sn.mat │ ├── brain_seg_sn.mat │ ├── brainmask.mat │ ├── colin.hdr │ ├── colin.img │ ├── flatmap.mat │ ├── seg_05mm.mat │ ├── seg_inv_sn.mat │ ├── seg_sn.mat │ ├── sph.mat │ └── subcortical.nii ├── contrib │ ├── SVM_classify_ROI.m │ ├── alphasim_table.m │ ├── combine_voi_matfiles.m │ ├── convert_to_ML14.sh │ ├── coordset_clusterscatter.m │ ├── create_block_onsets.m │ ├── create_er_onsets.m │ ├── createmotionprts.m │ ├── dartel │ │ ├── brain_rebox.m │ │ ├── dartel_create_template1mm_7its.mat │ │ ├── dartel_create_template_7its.mat │ │ ├── dartel_import_1mm.mat │ │ ├── dartel_import_and_run.mat │ │ ├── dartel_import_template_onmwm.mat │ │ ├── dartel_warp_only.mat │ │ ├── dartel_warp_to_MNI_manysub_fewimg.mat │ │ ├── dartel_warp_to_MNI_manysub_fewimg_1_5mm.mat │ │ ├── extract_brain.m │ │ ├── segment_only.mat │ │ ├── smooth_coreg_segment.mat │ │ ├── smooth_coreg_segment_brainextract.mat │ │ └── smooth_coreg_segment_brainextract_rawonly.mat │ ├── dcm2nii.a64 │ ├── dcm2nii.glx │ ├── dcm2nii.osx │ ├── dcm2nii.win │ ├── extract_tc_from_surf.m │ ├── filtertest.m │ ├── hrfboost_test.m │ ├── kmedioids.m │ ├── kmedoids.m │ ├── libSVM │ │ ├── COPYRIGHT │ │ ├── FAQ.html │ │ ├── README │ │ ├── README.matlab │ │ ├── heart_scale │ │ └── heart_scale.mat │ ├── mediation_exampledata.mat │ ├── meta_coords_reapp_100511.zip │ ├── modelcomp_regression.m │ ├── mrp_protosplit.m │ ├── ndsparse │ │ ├── GettingStarted.txt │ │ ├── UpdateNotes_2012_11_03.txt │ │ ├── license.txt │ │ └── ndstest.m │ ├── ne_remote │ │ ├── cb.js │ │ ├── cf.js │ │ ├── d3.js │ │ ├── icons │ │ │ ├── -1.png │ │ │ ├── 0.png │ │ │ ├── 1.png │ │ │ ├── and.png │ │ │ ├── back.png │ │ │ ├── balance.png │ │ │ ├── bars.png │ │ │ ├── c.png │ │ │ ├── cb.png │ │ │ ├── chair.png │ │ │ ├── cor.png │ │ │ ├── ddown.png │ │ │ ├── disk.png │ │ │ ├── down.png │ │ │ ├── dup.png │ │ │ ├── ellipse.png │ │ │ ├── f.png │ │ │ ├── flood.png │ │ │ ├── folder.png │ │ │ ├── gotor.png │ │ │ ├── hdown.png │ │ │ ├── hup.png │ │ │ ├── info.png │ │ │ ├── invmsk.png │ │ │ ├── ixx.png │ │ │ ├── left.png │ │ │ ├── link.png │ │ │ ├── maxi.png │ │ │ ├── mini.png │ │ │ ├── minus.png │ │ │ ├── mroi.png │ │ │ ├── mskvmr.png │ │ │ ├── or.png │ │ │ ├── ortho.png │ │ │ ├── paint.png │ │ │ ├── paint3.png │ │ │ ├── paintu.png │ │ │ ├── paren.png │ │ │ ├── persp.png │ │ │ ├── plot.png │ │ │ ├── plus.png │ │ │ ├── props.png │ │ │ ├── reload.png │ │ │ ├── remote.png │ │ │ ├── rend.png │ │ │ ├── right.png │ │ │ ├── roi.png │ │ │ ├── sag.png │ │ │ ├── sct.png │ │ │ ├── smooa.png │ │ │ ├── smoos.png │ │ │ ├── smp.png │ │ │ ├── sphere.png │ │ │ ├── surf.png │ │ │ ├── table.png │ │ │ ├── tick.png │ │ │ ├── tra.png │ │ │ ├── trans.png │ │ │ ├── trash.png │ │ │ ├── ulay.png │ │ │ ├── undock.png │ │ │ ├── up.png │ │ │ ├── xpand.png │ │ │ ├── xparen.png │ │ │ ├── xval.png │ │ │ └── zoom.png │ │ ├── images │ │ │ └── timeout.png │ │ ├── index.php │ │ ├── jq.js │ │ ├── jqf.js │ │ ├── jqm.css │ │ ├── jqm.js │ │ ├── jqmd.css │ │ ├── jqmd.js │ │ ├── jqmm.css │ │ ├── jqmm.js │ │ ├── jqmts.js │ │ ├── login.hti │ │ ├── login.jpg │ │ ├── loginfailed.hti │ │ ├── ne_remote.css │ │ ├── ne_remote.hti │ │ ├── ne_remote.js │ │ ├── ne_remote_login.css │ │ └── ne_remote_openfile.hti │ ├── neuroelf_initremote.m │ ├── phc_funcprocess.m │ ├── replace_catch_ne_eo.sh │ ├── rsa_test.m │ ├── screenshots.m │ ├── smp_gradient.m │ ├── spread.m │ ├── srfmovie.m │ ├── srfmovie2.m │ ├── test_AR2.m │ ├── transio_OPtest.m │ └── winterp_test.m ├── masks │ ├── colin_brain_ICBMnorm_brain2mm.msk │ ├── colin_brain_ICBMnorm_brain3mm.msk │ ├── colin_brain_ICBMnorm_csf2mm.msk │ ├── colin_brain_ICBMnorm_csf3mm.msk │ ├── colin_brain_ICBMnorm_csfx2mm.msk │ ├── colin_brain_ICBMnorm_csfx3mm.msk │ ├── colin_brain_ICBMnorm_gray2mm.msk │ ├── colin_brain_ICBMnorm_gray3mm.msk │ ├── colin_brain_ICBMnorm_white2mm.msk │ ├── colin_brain_ICBMnorm_white3mm.msk │ └── colin_brain_ICBMnorm_wholebrain3mm.msk ├── neurosynth │ ├── rterms.txt │ ├── terms.txt │ └── terms │ │ └── PLEASE_DO_NOT_DELETE_THIS_FOLDER ├── spm │ ├── smoothkernmax.mat │ ├── spm5_coreg.mat │ ├── spm5_dicomimport_job.mat │ ├── spm5_fmriestim.mat │ ├── spm5_fmrimodel.mat │ ├── spm5_mediation.mat │ ├── spm5_normest.mat │ ├── spm5_prepro.mat │ ├── spm5_segment.mat │ ├── spm5_writesn.mat │ ├── spm8_coreg.mat │ ├── spm8_dartel_create_template.mat │ ├── spm8_dartel_import.mat │ ├── spm8_dartel_mni_normalize_anat.mat │ ├── spm8_dartel_warp_to_template.mat │ ├── spm8_dicomimport_job.mat │ ├── spm8_extract.mat │ ├── spm8_icbmnorm_colin_job.mat │ ├── spm8_newseg.mat │ ├── spm8_newsegment.mat │ ├── spm8_normest.mat │ ├── spm8_prepro.mat │ ├── spm8_segment.mat │ └── spm8_segment_colin_job.mat ├── srf │ ├── unitcube.srf │ ├── unitcylinder4280.srf │ ├── unitsphere320.srf │ ├── unittridown.srf │ └── unittriup.srf └── tal │ ├── talairach.COPYRIGHT │ ├── talairach.nii │ ├── talairach_LH_seg_RECOSM_ICBMnorm_labels.smp │ ├── talairach_RH_seg_RECOSM_ICBMnorm_labels.smp │ ├── talairach_seg_inv_sn.mat │ └── talairach_seg_sn.mat ├── ac2vmp.m ├── acpc2tal.m ├── acsvread.m ├── afni_parse.m ├── alphasim.m ├── analyze_setendian.m ├── analyzerkfile.m ├── analyzeto4dnii.m ├── analyzetype.m ├── any2ascii.m ├── applybvtrf.m ├── applyfdr.m ├── applyspmsnc.c ├── applyspmsnc.m ├── applyspmsnc.mexa64 ├── applyspmsnc.mexglx ├── applyspmsnc.mexmaci ├── applyspmsnc.mexmaci64 ├── applyspmsnc.mexw32 ├── applyspmsnc.mexw64 ├── arlagsk.m ├── asciiread.m ├── asciitab.m ├── asciiwrite.m ├── assigninme.m ├── auroc.m ├── autocorr.m ├── averagepmps.m ├── averagestruct.m ├── averagevmrs.m ├── barycoord.m ├── bboverlay.m ├── bbubble.m ├── bcc2area.m ├── binread.m ├── binwrite.m ├── bitdump.m ├── bssample.m ├── bstrapbca.m ├── bstrappct.m ├── butterworth.m ├── bvcoordconv.m ├── bvtrf.m ├── bvxaddvartofile.m ├── bvxcreatefile.m ├── calcbetas.m ├── camelcase.m ├── catstruct.m ├── cellipse.m ├── checkstruct.m ├── checksyntax.m ├── clearxffobjects.m ├── clustercoords.m ├── clustercoordsc.c ├── clustercoordsc.m ├── clustercoordsc.mexa64 ├── clustercoordsc.mexglx ├── clustercoordsc.mexmaci ├── clustercoordsc.mexmaci64 ├── clustercoordsc.mexw32 ├── clustercoordsc.mexw64 ├── clusterdist.m ├── clustermeshmap.m ├── clustermeshmapbin.m ├── clustervol.m ├── clustervol_struct.m ├── colcode2uint32.m ├── colorpicker.m ├── combine3danalyze.m ├── combineffxglms.m ├── computehrv.m ├── computescalingwindow.m ├── condsum.c ├── condsum.m ├── condsum.mexa64 ├── condsum.mexglx ├── condsum.mexmaci ├── condsum.mexmaci64 ├── condsum.mexw32 ├── condsum.mexw64 ├── conjval.m ├── conjvalp.m ├── conv3d.c ├── conv3d.h ├── conv3d.m ├── conv3d.mexa64 ├── conv3d.mexglx ├── conv3d.mexmaci ├── conv3d.mexmaci64 ├── conv3d.mexw32 ├── conv3d.mexw64 ├── convones.m ├── correlinvtstat.m ├── correlpvalue.m ├── correltstat.m ├── corrmap.m ├── cov_nd.c ├── cov_nd.m ├── cov_nd.mexa64 ├── cov_nd.mexglx ├── cov_nd.mexmaci ├── cov_nd.mexmaci64 ├── cov_nd.mexw32 ├── cov_nd.mexw64 ├── cpfile.m ├── crawford_abnorm.m ├── crawford_diff.m ├── crawford_diss.m ├── createfmr.m ├── createmarkervmp.m ├── createsrf.m ├── createvmr.m ├── csvdbupdate.m ├── custom_pwelch.m ├── cutnpastemovie.m ├── dcm2nii.m ├── ddeblank.m ├── degclust.m ├── depcorrt.m ├── detecthandles.m ├── detecthandles_o.m ├── dicom2nii.m ├── dicom4todmr.m ├── dicom4tofmr.m ├── dicom_dic.m ├── dilate3d.m ├── dispp.m ├── dispslice.m ├── dispslicemovie.m ├── dispstruct.m ├── dividetrimesh.m ├── dtitrackfibers.m ├── dwitensorcalc.m ├── emptysrf.m ├── emptystruct.m ├── erode3d.m ├── exceltocoords.m ├── extcaller.m ├── extractfromvtcs.m ├── fdr_thresholds.m ├── fendian.m ├── fieldsize.m ├── fileguessendian.m ├── filesize.m ├── fileswapendian.m ├── findfiledir.m ├── findfiles.m ├── findfirst.c ├── findfirst.m ├── findfirst.mexa64 ├── findfirst.mexglx ├── findfirst.mexmaci ├── findfirst.mexmaci64 ├── findfirst.mexw32 ├── findfirst.mexw64 ├── fisherr2z.m ├── fitrobustbisquare.m ├── fitrobustbisquare_img.m ├── fitrobustbisquare_multi.m ├── flexinterpn.c ├── flexinterpn.m ├── flexinterpn.mexa64 ├── flexinterpn.mexglx ├── flexinterpn.mexmaci ├── flexinterpn.mexmaci64 ├── flexinterpn.mexw32 ├── flexinterpn.mexw64 ├── flexinterpn_demo.m ├── flexinterpn_method.m ├── flexinterpnw.m ├── flexinterpnw_method.m ├── flexmask.c ├── flexmask.h ├── flexmask.m ├── flexmask.mexa64 ├── flexmask.mexglx ├── flexmask.mexmaci ├── flexmask.mexmaci64 ├── flexmask.mexw32 ├── flexmask.mexw64 ├── floodfill3.m ├── floodfill3c.c ├── floodfill3c.m ├── floodfill3c.mexa64 ├── floodfill3c.mexglx ├── floodfill3c.mexmaci ├── floodfill3c.mexmaci64 ├── floodfill3c.mexw32 ├── floodfill3c.mexw64 ├── fminlbfgs.m ├── fminsearchbnd.m ├── fminsearchcon.m ├── fmriqasheet.m ├── fmriquality.m ├── fracanisotrop.m ├── fwhm2resel.m ├── gammapdf.m ├── generategsmask.m ├── generatetdx.m ├── glmtstat.m ├── gluetostring.m ├── gluetostringc.c ├── gluetostringc.m ├── gluetostringc.mexa64 ├── gluetostringc.mexglx ├── gluetostringc.mexmaci ├── gluetostringc.mexmaci64 ├── gluetostringc.mexw32 ├── gluetostringc.mexw64 ├── gradmag.m ├── gradsmooth.m ├── grep.m ├── guesssliceorder.m ├── harmmean.m ├── hasfields.m ├── heartbeats.m ├── hexdump.m ├── histcount.c ├── histcount.m ├── histcount.mexa64 ├── histcount.mexglx ├── histcount.mexmaci ├── histcount.mexmaci64 ├── histcount.mexw32 ├── histcount.mexw64 ├── histfilter.m ├── histnd.m ├── histscale.m ├── hrf.m ├── hrfboost.m ├── hsvconv.c ├── hsvconv.m ├── hsvconv.mexa64 ├── hsvconv.mexglx ├── hsvconv.mexmaci ├── hsvconv.mexmaci64 ├── hsvconv.mexw32 ├── hsvconv.mexw64 ├── hxdouble.m ├── hxsingle.m ├── icbm2tal.m ├── icc.m ├── idftextread.m ├── image_analyze.m ├── image_complexity.m ├── image_matchprops.m ├── image_resize.m ├── image_rotate.m ├── images2movie.m ├── importbesa.m ├── importfif.m ├── importfmrfromanalyze.m ├── importplpfrommkdadb.m ├── importrfxglmfromafni.m ├── importrfxglmfromspms.m ├── importvmpfromspms.m ├── importvmrfromanalyze.m ├── importvtcfromanalyze.m ├── indepcorrz.m ├── indexarray.c ├── indexarray.m ├── indexarray.mexa64 ├── indexarray.mexglx ├── indexarray.mexmaci ├── indexarray.mexmaci64 ├── indexarray.mexw32 ├── indexarray.mexw64 ├── indexarraynb.c ├── indexarraynb.m ├── indexarraynb.mexa64 ├── indexarraynb.mexglx ├── indexarraynb.mexmaci ├── indexarraynb.mexmaci64 ├── indexarraynb.mexw32 ├── indexarraynb.mexw64 ├── initialalignment.m ├── invnd.m ├── invsystem.m ├── isBVQXfile.m ├── isabsolute.m ├── isectlp.m ├── isinfnan.c ├── isinfnan.h ├── isinfnan.m ├── isinfnan.mexa64 ├── isinfnan.mexglx ├── isinfnan.mexmaci ├── isinfnan.mexmaci64 ├── isinfnan.mexw32 ├── isinfnan.mexw64 ├── isrealvarname.m ├── istransio.m ├── isxff.m ├── isxfigure.m ├── isxini.m ├── jksample.m ├── joinlayers.c ├── joinlayers.m ├── joinlayers.mexa64 ├── joinlayers.mexglx ├── joinlayers.mexmaci ├── joinlayers.mexmaci64 ├── joinlayers.mexw32 ├── joinlayers.mexw64 ├── joinstructs.m ├── kendtau.m ├── kendtaupairsign.c ├── kendtaupairsign.m ├── kendtaupairsign.mexa64 ├── kendtaupairsign.mexglx ├── kendtaupairsign.mexmaci ├── kendtaupairsign.mexmaci64 ├── kendtaupairsign.mexw32 ├── kendtaupairsign.mexw64 ├── kendtaut.m ├── kendtauz.m ├── kurt.m ├── limitrangec.c ├── limitrangec.m ├── limitrangec.mexa64 ├── limitrangec.mexglx ├── limitrangec.mexmaci ├── limitrangec.mexmaci64 ├── limitrangec.mexw32 ├── limitrangec.mexw64 ├── limittorange.m ├── linscale.m ├── litekmeans.m ├── lsqueeze.m ├── lsqueezecells.m ├── ltriasc.m ├── madistd.m ├── mainver.m ├── makelabel.m ├── mapestsmooth.m ├── mappvalue.m ├── maxdistcol.m ├── maxgrad.m ├── maxpos.m ├── meannoinfnan.m ├── meanpsctrans.m ├── mediationpset.m ├── memusage.m ├── mergehemivmrs.m ├── mesh3d.m ├── mesh_dist.c ├── mesh_dist.m ├── mesh_dist.mexa64 ├── mesh_dist.mexglx ├── mesh_dist.mexmaci ├── mesh_dist.mexmaci64 ├── mesh_dist.mexw32 ├── mesh_dist.mexw64 ├── mesh_morph.c ├── mesh_morph.m ├── mesh_morph.mexa64 ├── mesh_morph.mexglx ├── mesh_morph.mexmaci ├── mesh_morph.mexmaci64 ├── mesh_morph.mexw32 ├── mesh_morph.mexw64 ├── mesh_morphm.m ├── mesh_neighborsarray.c ├── mesh_neighborsarray.m ├── mesh_neighborsarray.mexa64 ├── mesh_neighborsarray.mexglx ├── mesh_neighborsarray.mexmaci ├── mesh_neighborsarray.mexmaci64 ├── mesh_neighborsarray.mexw32 ├── mesh_neighborsarray.mexw64 ├── mesh_normals.c ├── mesh_normals.m ├── mesh_normals.mexa64 ├── mesh_normals.mexglx ├── mesh_normals.mexmaci ├── mesh_normals.mexmaci64 ├── mesh_normals.mexw32 ├── mesh_normals.mexw64 ├── mesh_reconstruct.c ├── mesh_reconstruct.m ├── mesh_reconstruct.mexa64 ├── mesh_reconstruct.mexglx ├── mesh_reconstruct.mexmaci ├── mesh_reconstruct.mexmaci64 ├── mesh_reconstruct.mexw32 ├── mesh_reconstruct.mexw64 ├── mesh_trianglestoneighbors.c ├── mesh_trianglestoneighbors.m ├── mesh_trianglestoneighbors.mexa64 ├── mesh_trianglestoneighbors.mexglx ├── mesh_trianglestoneighbors.mexmaci ├── mesh_trianglestoneighbors.mexmaci64 ├── mesh_trianglestoneighbors.mexw32 ├── mesh_trianglestoneighbors.mexw64 ├── mesh_tridivide.c ├── mesh_tridivide.mexa64 ├── mesh_tridivide.mexglx ├── mesh_tridivide.mexmaci ├── mesh_tridivide.mexmaci64 ├── mesh_tridivide.mexw32 ├── mesh_tridivide.mexw64 ├── mesh_trimapmesh.c ├── mesh_trimapmesh.m ├── mesh_trimapmesh.mexa64 ├── mesh_trimapmesh.mexglx ├── mesh_trimapmesh.mexmaci ├── mesh_trimapmesh.mexmaci64 ├── mesh_trimapmesh.mexw32 ├── mesh_trimapmesh.mexw64 ├── mfileparts.m ├── minarray.m ├── minmaxbbox.m ├── minmaxmean.c ├── minmaxmean.m ├── minmaxmean.mexa64 ├── minmaxmean.mexglx ├── minmaxmean.mexmaci ├── minmaxmean.mexmaci64 ├── minmaxmean.mexw32 ├── minmaxmean.mexw64 ├── minpos.m ├── mkadir.m ├── mkda_multivariate.m ├── mkda_plp_cluster.m ├── mltype.m ├── mmregress.m ├── mni2tal.m ├── modelcomp.m ├── modelcompse.m ├── montagemix.m ├── moveinlist.m ├── movieplayer.m ├── mpackage.m ├── mrmanova.m ├── mrmanova_ssq.m ├── mstrrep.m ├── mtc_concat.m ├── mtimesnd.m ├── multimatch.m ├── multiset.m ├── multislicetovol.m ├── ndsparse.m ├── ne_bwlabel.m ├── ne_eo.m ├── ne_fastica.m ├── ne_freesurfer.m ├── ne_gzip.m ├── ne_sqrtm.m ├── ne_svmpredict.m ├── ne_svmtrain.m ├── neuroelf_build.m ├── neuroelf_file.m ├── neuroelf_gui.m ├── neuroelf_help.m ├── neuroelf_lasterr.m ├── neuroelf_license.m ├── neuroelf_makefiles.m ├── neuroelf_makelibs.m ├── neuroelf_pack.m ├── neuroelf_path.m ├── neuroelf_setup.m ├── neuroelf_splash.m ├── neuroelf_updatebuilds.m ├── neuroelf_version.m ├── newhdr.m ├── newhiresvmr.m ├── newnatresvmp.m ├── newnii.m ├── noinfnan.m ├── normcdfc.c ├── normcdfc.m ├── normcdfc.mexa64 ├── normcdfc.mexglx ├── normcdfc.mexmaci ├── normcdfc.mexmaci64 ├── normcdfc.mexw32 ├── normcdfc.mexw64 ├── normvecs.m ├── numberofties.m ├── numword.m ├── onesamplet.m ├── onsetshifttest.m ├── orthimage.m ├── orthsdm.m ├── orthvec.m ├── orthvecs.m ├── ostype.m ├── osz.m ├── otsulevel.m ├── packmosaic.m ├── pairs.m ├── parseformula.m ├── parseopts.m ├── partoanalyze75.m ├── persubjectglms.m ├── plotcurves.m ├── plurals.m ├── pmbfilter.m ├── pmpalignment.m ├── poolgroups.m ├── poolnonsingletrial.m ├── prctilend.m ├── prefilter.m ├── private ├── btc_coordc.m ├── btc_meshcn.m ├── btc_meshcolor.m ├── cv_addtolist.m ├── cv_removefromlist.m ├── cv_slicevar.m ├── cv_statsvar.m ├── cv_varlist.m ├── ne_about.m ├── ne_addatlascluster.m ├── ne_addcluster.m ├── ne_alphasim.m ├── ne_averagenii.m ├── ne_breakcb.m ├── ne_btdown.m ├── ne_btmove.m ├── ne_btup.m ├── ne_clonefile.m ├── ne_closefile.m ├── ne_closesatwindow.m ├── ne_closewindow.m ├── ne_clustertable.m ├── ne_cm_addcon.m ├── ne_cm_addcovs.m ├── ne_cm_addgroup.m ├── ne_cm_balancepredweights.m ├── ne_cm_clearpredweights.m ├── ne_cm_closeui.m ├── ne_cm_compute.m ├── ne_cm_delcon.m ├── ne_cm_delcovs.m ├── ne_cm_delgroup.m ├── ne_cm_getweights.m ├── ne_cm_loadcons.m ├── ne_cm_loadcovs.m ├── ne_cm_open.m ├── ne_cm_rencon.m ├── ne_cm_rengroup.m ├── ne_cm_rfxswitch.m ├── ne_cm_roicovs.m ├── ne_cm_savecons.m ├── ne_cm_selectcon.m ├── ne_cm_selectcovs.m ├── ne_cm_selectpreds.m ├── ne_cm_selectpweights.m ├── ne_cm_selectsubs.m ├── ne_cm_selgroup.m ├── ne_cm_setglm.m ├── ne_cm_setpredweight.m ├── ne_cm_setweights.m ├── ne_cm_smoothdata.m ├── ne_cm_updatertv.m ├── ne_cm_updateuis.m ├── ne_cm_usegroups.m ├── ne_delcluster.m ├── ne_draw.m ├── ne_draw_histmarked.m ├── ne_draw_loadubuff.m ├── ne_echo.m ├── ne_exportnii.m ├── ne_extcluster.m ├── ne_fcprepro.m ├── ne_fmriquality.m ├── ne_glmgeneratemdm.m ├── ne_glmplotbetas.m ├── ne_glmplotbetasgui.m ├── ne_glmplotbetaskyp.m ├── ne_glmplotbetaskyr.m ├── ne_glmplotbetasrsz.m ├── ne_glmplotbetasup.m ├── ne_hdr_dti.m ├── ne_hdr_obliqueslices.m ├── ne_hdr_segment.m ├── ne_help.m ├── ne_httpget.m ├── ne_importrfxglm.m ├── ne_importvmp.m ├── ne_importvmr.m ├── ne_initwindow.m ├── ne_keypress.m ├── ne_keypress_uic.m ├── ne_keyrelease.m ├── ne_limitclusters.m ├── ne_loadcluster.m ├── ne_loadobjects.m ├── ne_lut_edit.m ├── ne_markclusters.m ├── ne_maskstatswithcls.m ├── ne_maskstatswithvmr.m ├── ne_mdm_addfiles.m ├── ne_mdm_bfedit.m ├── ne_mdm_browse.m ├── ne_mdm_closeui.m ├── ne_mdm_compute.m ├── ne_mdm_delfiles.m ├── ne_mdm_ffiles.m ├── ne_mdm_filtsetone.m ├── ne_mdm_loadmdm.m ├── ne_mdm_modelsetone.m ├── ne_mdm_open.m ├── ne_mdm_regsetone.m ├── ne_mdm_savemdm.m ├── ne_mdm_select.m ├── ne_mdm_selectmask.m ├── ne_mdm_setglmfile.m ├── ne_mdm_showopt.m ├── ne_mdm_togglerps.m ├── ne_mdm_transsetone.m ├── ne_mdm_updatemdm.m ├── ne_mdm_updateui.m ├── ne_mdmqcglobtc.m ├── ne_mdmqcvtc.m ├── ne_mdmvoicondavg.m ├── ne_mdmvoicondavggui.m ├── ne_mdmvoicondavgrsz.m ├── ne_mdmvoicondavgup.m ├── ne_mkda.m ├── ne_mkda_addana.m ├── ne_mkda_closeui.m ├── ne_mkda_conds.m ├── ne_mkda_delana.m ├── ne_mkda_delplpcol.m ├── ne_mkda_delplppts.m ├── ne_mkda_import.m ├── ne_mkda_listpoints.m ├── ne_mkda_load.m ├── ne_mkda_parsecont.m ├── ne_mkda_plotonslice.m ├── ne_mkda_plotonsurf.m ├── ne_mkda_plotsetcolor.m ├── ne_mkda_readui.m ├── ne_mkda_renana.m ├── ne_mkda_run.m ├── ne_mkda_save.m ├── ne_mkda_setana.m ├── ne_mkda_setcondcol.m ├── ne_mkda_setcondval.m ├── ne_mkda_setcontcol.m ├── ne_mkda_setoption.m ├── ne_mkda_setplp.m ├── ne_mkda_updana.m ├── ne_movestatmap.m ├── ne_neurosynth.m ├── ne_newfile.m ├── ne_openfile.m ├── ne_openreffile.m ├── ne_openstatsfile.m ├── ne_physio.m ├── ne_physio_browse.m ├── ne_physio_datakind.m ├── ne_physio_load.m ├── ne_physio_newsfreq.m ├── ne_physio_process.m ├── ne_physio_resample.m ├── ne_physio_sfedit.m ├── ne_physio_togglerwc.m ├── ne_recentfiles.m ├── ne_reloadfile.m ├── ne_remote.m ├── ne_renamedicom.m ├── ne_render.m ├── ne_render_closeui.m ├── ne_render_ex.m ├── ne_render_setview.m ├── ne_render_smoothstats.m ├── ne_render_updateui.m ├── ne_rm_closeui.m ├── ne_rm_compute.m ├── ne_rm_open.m ├── ne_rm_select.m ├── ne_rm_setglm.m ├── ne_satresize.m ├── ne_savecluster.m ├── ne_savefile.m ├── ne_savetcsdm.m ├── ne_savetextoutput.m ├── ne_scenerylist.m ├── ne_scenerytrans.m ├── ne_screenshot.m ├── ne_selectfile.m ├── ne_setcluster.m ├── ne_setcsrf.m ├── ne_setcsrfstatbars.m ├── ne_setcsrfstatmap.m ├── ne_setcsrfstats.m ├── ne_setcstatmap.m ├── ne_setcstatmapformula.m ├── ne_setcstatmapproj.m ├── ne_setcstatmapprops.m ├── ne_setcstats.m ├── ne_setcvar.m ├── ne_setdrawmode.m ├── ne_setglobaltrf.m ├── ne_setoption.m ├── ne_setrgbcolor.m ├── ne_setsatslicepos.m ├── ne_setsceneproj.m ├── ne_setsceneprops.m ├── ne_setslicepos.m ├── ne_setstatsplitc.m ├── ne_setstatthr.m ├── ne_setstatthrccheck.m ├── ne_setstatthrcolor.m ├── ne_setstatthrpval.m ├── ne_setstatthrtails.m ├── ne_setsurfpos.m ├── ne_setunderlay.m ├── ne_setvartrf.m ├── ne_setview.m ├── ne_setwindowpos.m ├── ne_showpage.m ├── ne_showsatpage.m ├── ne_smoothstats.m ├── ne_smp_combine.m ├── ne_smp_save.m ├── ne_spmmat2prt.m ├── ne_spmmat2sdm.m ├── ne_spmxprepro.m ├── ne_srf_reload.m ├── ne_srf_save.m ├── ne_srf_tools.m ├── ne_statsmenu.m ├── ne_swapfullsize.m ├── ne_tcmovie.m ├── ne_togglelinked.m ├── ne_undock.m ├── ne_unloadobjects.m ├── ne_updatesmpprops.m ├── ne_vismontage.m ├── ne_vismontage_bgcol.m ├── ne_vismontage_closeui.m ├── ne_vismontage_create.m ├── ne_vismontage_create_ex.m ├── ne_vismontage_updateui.m ├── ne_visspmrp.m ├── ne_vmp_applyfdr.m ├── ne_vmp_applysvc.m ├── ne_vmp_combine.m ├── ne_vmp_createmsk.m ├── ne_vmp_createsmp.m ├── ne_vmp_threshmaps.m ├── ne_vmp_writeana.m ├── ne_vmpplotbetas.m ├── ne_vmr_clean.m ├── ne_vmr_dbreco.m ├── ne_vmr_exportrgb.m ├── ne_vmr_ihc.m ├── ne_vmr_limitvmr.m ├── ne_vmr_peelbrain.m ├── ne_voimenu.m └── ne_vtc_meanstdvmp.m ├── progresscount.m ├── psctrans.m ├── psetdists.c ├── psetdists.m ├── psetdists.mexa64 ├── psetdists.mexglx ├── psetdists.mexmaci ├── psetdists.mexmaci64 ├── psetdists.mexw32 ├── psetdists.mexw64 ├── ptb_drawscene.m ├── ptb_initscreen.m ├── ptb_waitforkey.m ├── quattrans.h ├── rangegrid.m ├── ranktrans.m ├── rbalign.m ├── readbesa.m ├── readeprimetextlog.m ├── readhrv.m ├── readpar.m ├── reccheck.m ├── recordkeys.m ├── regress_coords.m ├── relfilename.m ├── renamedicom.m ├── renamefields.m ├── renamefile.m ├── render_volume.m ├── renderlayers.c ├── renderlayers.m ├── renderlayers.mexa64 ├── renderlayers.mexglx ├── renderlayers.mexmaci ├── renderlayers.mexmaci64 ├── renderlayers.mexw32 ├── renderlayers.mexw64 ├── renderv3d.m ├── renderv3dub.c ├── renderv3dub.m ├── renderv3dub.mexa64 ├── renderv3dub.mexglx ├── renderv3dub.mexmaci ├── renderv3dub.mexmaci64 ├── renderv3dub.mexw32 ├── renderv3dub.mexw64 ├── renderv3dvm.m ├── renderv3dxia.c ├── renderv3dxia.m ├── renderv3dxia.mexa64 ├── renderv3dxia.mexglx ├── renderv3dxia.mexmaci ├── renderv3dxia.mexmaci64 ├── renderv3dxia.mexw32 ├── renderv3dxia.mexw64 ├── replacerobmean.m ├── resampleaa.m ├── resestsmooth.m ├── resolvetransio.m ├── rmanova2w.m ├── rmean.m ├── robcorrcoef.m ├── robscatter.m ├── robustF.m ├── robustmean.m ├── robustnsamplet.m ├── robustnsamplet_img.m ├── robustt.m ├── safecon.m ├── samplefaevec.m ├── samplefmrspace.m ├── scaledata.m ├── scaleimage.m ├── sdist.m ├── selectstruct.m ├── setinfnantomean.m ├── setinfnantoval.m ├── setsparseval.c ├── setsparseval.m ├── setsparseval.mexa64 ├── setsparseval.mexglx ├── setsparseval.mexmaci ├── setsparseval.mexmaci64 ├── setsparseval.mexw32 ├── setsparseval.mexw64 ├── showspmrparams.m ├── showvtcsize.m ├── shrinkfg.m ├── shufflelist.m ├── signpermt.m ├── simcluster.m ├── singletrialprts.m ├── skarlags.m ├── skew.m ├── sliceranges.m ├── slydetrend.m ├── smoothdata3.m ├── smoothimg.m ├── smoothkern.m ├── smoothned.m ├── smpdist.m ├── solvesudoku.m ├── spatent.m ├── spherecoords.m ├── spherecoordsinv.m ├── spheresrf.m ├── spherevmr.m ├── splitclustercoords.m ├── splittocell.m ├── splittocellc.c ├── splittocellc.m ├── splittocellc.mexa64 ├── splittocellc.mexglx ├── splittocellc.mexmaci ├── splittocellc.mexmaci64 ├── splittocellc.mexw32 ├── splittocellc.mexw64 ├── spmitrf.m ├── spmm2q.m ├── spmmat2prt.m ├── spmmat2sdm.m ├── spmq2m.m ├── spmtrf.m ├── spmx_extract_brain.m ├── spmx_preprojobs.m ├── spmx_updatejobs.m ├── sprintfbx.c ├── sprintfbx.m ├── sprintfbx.mexa64 ├── sprintfbx.mexglx ├── sprintfbx.mexmaci ├── sprintfbx.mexmaci64 ├── sprintfbx.mexw32 ├── sprintfbx.mexw64 ├── srfalignment.m ├── srfbvxalign.m ├── stcluster.m ├── stcorrect.m ├── stinconsistent.m ├── stoufferz.m ├── structdiff.m ├── sub2ind1.m ├── subclusters.m ├── subget.m ├── svcvolume.m ├── svm2x.cpp ├── svm2x.h ├── svm3x.cpp ├── svm3x.def ├── svm3x.h ├── svm3xmodel.c ├── svm3xmodel.h ├── svmpredictc2x.c ├── svmpredictc2x.mexa64 ├── svmpredictc2x.mexglx ├── svmpredictc2x.mexmaci ├── svmpredictc2x.mexmaci64 ├── svmpredictc2x.mexw32 ├── svmpredictc2x.mexw64 ├── svmpredictc3x.c ├── svmpredictc3x.mexa64 ├── svmpredictc3x.mexglx ├── svmpredictc3x.mexmaci ├── svmpredictc3x.mexmaci64 ├── svmpredictc3x.mexw32 ├── svmpredictc3x.mexw64 ├── svmreadc3x.c ├── svmreadc3x.mexa64 ├── svmreadc3x.mexglx ├── svmreadc3x.mexmaci ├── svmreadc3x.mexmaci64 ├── svmreadc3x.mexw32 ├── svmreadc3x.mexw64 ├── svmtrainc2x.c ├── svmtrainc2x.mexa64 ├── svmtrainc2x.mexglx ├── svmtrainc2x.mexmaci ├── svmtrainc2x.mexmaci64 ├── svmtrainc2x.mexw32 ├── svmtrainc2x.mexw64 ├── svmtrainc3x.c ├── svmtrainc3x.mexa64 ├── svmtrainc3x.mexglx ├── svmtrainc3x.mexmaci ├── svmtrainc3x.mexmaci64 ├── svmtrainc3x.mexw32 ├── svmtrainc3x.mexw64 ├── svmwritec3x.c ├── svmwritec3x.mexa64 ├── svmwritec3x.mexglx ├── svmwritec3x.mexmaci ├── svmwritec3x.mexmaci64 ├── svmwritec3x.mexw32 ├── svmwritec3x.mexw64 ├── tablesextract.m ├── tal2acpc.m ├── tal2icbm.m ├── tal2mni.m ├── tcchecksum.m ├── tcpdump_parse.m ├── tcplot.m ├── tdclient.m ├── tdgrayscale.m ├── tdlabel.m ├── tdlocal2.m ├── tempfilter.m ├── testfilters.m ├── testjittershifts.m ├── textcrypt.m ├── textline.m ├── tfgparse.m ├── tfmatrix.m ├── threshlutc.c ├── threshlutc.m ├── threshlutc.mexa64 ├── threshlutc.mexglx ├── threshlutc.mexmaci ├── threshlutc.mexmaci64 ├── threshlutc.mexw32 ├── threshlutc.mexw64 ├── threshmapc.c ├── threshmapc.m ├── threshmapc.mexa64 ├── threshmapc.mexglx ├── threshmapc.mexmaci ├── threshmapc.mexmaci64 ├── threshmapc.mexw32 ├── threshmapc.mexw64 ├── tmpestsmooth.m ├── transmul.c ├── transmul.m ├── transmul.mexa64 ├── transmul.mexglx ├── transmul.mexmaci ├── transmul.mexmaci64 ├── transmul.mexw32 ├── transmul.mexw64 ├── tstfrommsw.m ├── u8str2double.c ├── u8str2double.m ├── u8str2double.mexa64 ├── u8str2double.mexglx ├── u8str2double.mexmaci ├── u8str2double.mexmaci64 ├── u8str2double.mexw32 ├── u8str2double.mexw64 ├── uint322colcode.m ├── unpackmosaic.m ├── unzerostring.m ├── utc.m ├── uunion.m ├── varc.c ├── varc.m ├── varc.mexa64 ├── varc.mexglx ├── varc.mexmaci ├── varc.mexmaci64 ├── varc.mexw32 ├── varc.mexw64 ├── vifactor.m ├── vmrsegment.m ├── vmrspmcoreg.m ├── vmvreadpos.m ├── vmvwritepos.m ├── vtc_concat.m ├── vtccondaverage.m ├── vtcregressout.m ├── winsorize.m ├── writemat.m ├── writestcfiles.m ├── xffcompare.m ├── xffsrfparseneighbors.m ├── xffsrfparseneighborsc.c ├── xffsrfparseneighborsc.mexa64 ├── xffsrfparseneighborsc.mexglx ├── xffsrfparseneighborsc.mexmaci ├── xffsrfparseneighborsc.mexmaci64 ├── xffsrfparseneighborsc.mexw32 ├── xffsrfparseneighborsc.mexw64 ├── xffsrfwriteneighbors.m ├── xffsrfwriteneighborsc.c ├── xffsrfwriteneighborsc.mexa64 ├── 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