├── .gitignore ├── LICENSE ├── README.md ├── download_data.sh ├── evaluate_all_epochs.sh ├── evaluate_interaction_prediction.py ├── evaluate_state_change_prediction.py ├── get_final_performance_numbers.py ├── initialize.sh ├── jodie.py ├── library_data.py ├── library_models.py ├── requirements.txt └── tbatch.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/README.md -------------------------------------------------------------------------------- /download_data.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/download_data.sh -------------------------------------------------------------------------------- /evaluate_all_epochs.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/evaluate_all_epochs.sh -------------------------------------------------------------------------------- /evaluate_interaction_prediction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/evaluate_interaction_prediction.py -------------------------------------------------------------------------------- /evaluate_state_change_prediction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/evaluate_state_change_prediction.py -------------------------------------------------------------------------------- /get_final_performance_numbers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/get_final_performance_numbers.py -------------------------------------------------------------------------------- /initialize.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/initialize.sh -------------------------------------------------------------------------------- /jodie.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/jodie.py -------------------------------------------------------------------------------- /library_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/library_data.py -------------------------------------------------------------------------------- /library_models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/library_models.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/requirements.txt -------------------------------------------------------------------------------- /tbatch.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/claws-lab/jodie/HEAD/tbatch.py --------------------------------------------------------------------------------