├── .github ├── demo.mp4 └── example.png ├── .gitignore ├── README.md ├── collm ├── dataset │ ├── formatting.py │ ├── initialization.py │ └── scoring.py ├── eval.py ├── generate.py ├── inference │ ├── api_server_deferral.py │ ├── api_server_logits.py │ └── api_server_simple.py ├── merge_lora.py ├── safe_save_trainer.py ├── training │ ├── default_trainer_hf.py │ ├── deferral_trainer_hf.py │ ├── deferral_training_tools.py │ └── qlora_finetuning.py └── utils.py ├── ds_configs ├── stage2.conf ├── stage2_no_offloading.conf ├── stage2_no_offloading_accelerate.conf ├── stage3_no_offloading.conf ├── stage3_no_offloading_accelerate.conf ├── stage3_offloading.conf └── stage3_offloading_accelerate.conf ├── forward.js ├── pyproject.toml ├── requirements.txt └── scripts ├── evaluation ├── generic │ ├── default_generate.sh │ └── deferral_generate.sh └── gsm8k │ ├── default_generate.sh │ └── deferral_generate.sh └── train └── gsm8k ├── create_init_dataset.sh ├── create_train_data.py ├── default_finetune_with_hf_trainer.sh ├── deferral_finetune_with_hf_trainer.sh ├── deferral_finetune_with_hf_trainer_weak-supervision.sh ├── finetune_qlora_with_accelerate.sh └── process_dataset.sh /.github/demo.mp4: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/.github/demo.mp4 -------------------------------------------------------------------------------- /.github/example.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/.github/example.png -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/README.md -------------------------------------------------------------------------------- /collm/dataset/formatting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/dataset/formatting.py -------------------------------------------------------------------------------- /collm/dataset/initialization.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/dataset/initialization.py -------------------------------------------------------------------------------- /collm/dataset/scoring.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/dataset/scoring.py -------------------------------------------------------------------------------- /collm/eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/eval.py -------------------------------------------------------------------------------- /collm/generate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/generate.py -------------------------------------------------------------------------------- /collm/inference/api_server_deferral.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/inference/api_server_deferral.py -------------------------------------------------------------------------------- /collm/inference/api_server_logits.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/inference/api_server_logits.py -------------------------------------------------------------------------------- /collm/inference/api_server_simple.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/inference/api_server_simple.py -------------------------------------------------------------------------------- /collm/merge_lora.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/merge_lora.py -------------------------------------------------------------------------------- /collm/safe_save_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/safe_save_trainer.py -------------------------------------------------------------------------------- /collm/training/default_trainer_hf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/training/default_trainer_hf.py -------------------------------------------------------------------------------- /collm/training/deferral_trainer_hf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/training/deferral_trainer_hf.py -------------------------------------------------------------------------------- /collm/training/deferral_training_tools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/training/deferral_training_tools.py -------------------------------------------------------------------------------- /collm/training/qlora_finetuning.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/training/qlora_finetuning.py -------------------------------------------------------------------------------- /collm/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/collm/utils.py -------------------------------------------------------------------------------- /ds_configs/stage2.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/ds_configs/stage2.conf -------------------------------------------------------------------------------- /ds_configs/stage2_no_offloading.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/ds_configs/stage2_no_offloading.conf -------------------------------------------------------------------------------- /ds_configs/stage2_no_offloading_accelerate.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/ds_configs/stage2_no_offloading_accelerate.conf -------------------------------------------------------------------------------- /ds_configs/stage3_no_offloading.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/ds_configs/stage3_no_offloading.conf -------------------------------------------------------------------------------- /ds_configs/stage3_no_offloading_accelerate.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/ds_configs/stage3_no_offloading_accelerate.conf -------------------------------------------------------------------------------- /ds_configs/stage3_offloading.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/ds_configs/stage3_offloading.conf -------------------------------------------------------------------------------- /ds_configs/stage3_offloading_accelerate.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/ds_configs/stage3_offloading_accelerate.conf -------------------------------------------------------------------------------- /forward.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/forward.js -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/pyproject.toml -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/requirements.txt -------------------------------------------------------------------------------- /scripts/evaluation/generic/default_generate.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/scripts/evaluation/generic/default_generate.sh -------------------------------------------------------------------------------- /scripts/evaluation/generic/deferral_generate.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/scripts/evaluation/generic/deferral_generate.sh -------------------------------------------------------------------------------- /scripts/evaluation/gsm8k/default_generate.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/scripts/evaluation/gsm8k/default_generate.sh -------------------------------------------------------------------------------- /scripts/evaluation/gsm8k/deferral_generate.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/scripts/evaluation/gsm8k/deferral_generate.sh -------------------------------------------------------------------------------- /scripts/train/gsm8k/create_init_dataset.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/scripts/train/gsm8k/create_init_dataset.sh -------------------------------------------------------------------------------- /scripts/train/gsm8k/create_train_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/scripts/train/gsm8k/create_train_data.py -------------------------------------------------------------------------------- /scripts/train/gsm8k/default_finetune_with_hf_trainer.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/scripts/train/gsm8k/default_finetune_with_hf_trainer.sh -------------------------------------------------------------------------------- /scripts/train/gsm8k/deferral_finetune_with_hf_trainer.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/scripts/train/gsm8k/deferral_finetune_with_hf_trainer.sh -------------------------------------------------------------------------------- /scripts/train/gsm8k/deferral_finetune_with_hf_trainer_weak-supervision.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/scripts/train/gsm8k/deferral_finetune_with_hf_trainer_weak-supervision.sh -------------------------------------------------------------------------------- /scripts/train/gsm8k/finetune_qlora_with_accelerate.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/scripts/train/gsm8k/finetune_qlora_with_accelerate.sh -------------------------------------------------------------------------------- /scripts/train/gsm8k/process_dataset.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/clinicalml/co-llm/HEAD/scripts/train/gsm8k/process_dataset.sh --------------------------------------------------------------------------------