├── .bumpversion.cfg ├── .dockerignore ├── .editorconfig ├── .env.example ├── .git-blame-ignore-revs ├── .github ├── PULL_REQUEST_TEMPLATE.md ├── release-drafter.yml └── workflows │ ├── ci.yaml │ ├── create-release.yml │ ├── dependabot-assignments.yml │ ├── missing_signals.yaml │ ├── performance-tests.yml │ ├── release-helper.yml │ └── update_gdocs_data.yml ├── .gitignore ├── Jenkinsfile ├── LICENSE ├── README.md ├── deploy.json ├── dev ├── docker │ ├── database │ │ ├── epidata │ │ │ ├── Dockerfile │ │ │ ├── README.md │ │ │ └── _init.sql │ │ └── mysql.d │ │ │ └── my.cnf │ ├── python │ │ ├── Dockerfile │ │ └── setup.sh │ └── redis │ │ └── Dockerfile └── local │ ├── .dockerignore │ ├── Makefile │ ├── install.sh │ ├── pyproject.toml │ └── setup.cfg ├── devops ├── Dockerfile └── gunicorn_conf.py ├── docs ├── .gitignore ├── 404.html ├── Gemfile ├── Gemfile.lock ├── _config.yml ├── _includes │ └── head_custom.html ├── about_delphi.md ├── api │ ├── 01meta.md │ ├── README.md │ ├── api_keys.md │ ├── cdc.md │ ├── client_libraries.md │ ├── covid_hosp.md │ ├── covid_hosp_facility.md │ ├── covid_hosp_facility_lookup.md │ ├── covidcast-signals │ │ ├── _source-template.md │ │ ├── chng.md │ │ ├── covid-act-now.md │ │ ├── covid-trends-and-impact-survey.md │ │ ├── doctor-visits.md │ │ ├── dsew-cpr.md │ │ ├── ght.md │ │ ├── google-survey.md │ │ ├── google-symptoms.md │ │ ├── hhs.md │ │ ├── hospital-admissions.md │ │ ├── indicator-combination.md │ │ ├── jhu-csse.md │ │ ├── nchs-mortality.md │ │ ├── nhsn.md │ │ ├── nssp.md │ │ ├── quidel.md │ │ ├── safegraph.md │ │ ├── usa-facts.md │ │ └── youtube-survey.md │ ├── covidcast.md │ ├── covidcast_changelog.md │ ├── covidcast_clients.md │ ├── covidcast_geography.md │ ├── covidcast_licensing.md │ ├── covidcast_meta.md │ ├── covidcast_signals.md │ ├── covidcast_times.md │ ├── delphi.md │ ├── delphi_research_group.md │ ├── dengue_digital_surveillance.md │ ├── dengue_nowcast.md │ ├── digital_surveillance_sensors.md │ ├── ecdc_ili.md │ ├── epidata_signals.md │ ├── flusurv.md │ ├── fluview.md │ ├── fluview_clinical.md │ ├── fluview_meta.md │ ├── gft.md │ ├── ght.md │ ├── ili_nearby_nowcast.md │ ├── kcdc_ili.md │ ├── missing_codes.md │ ├── nidss_dengue.md │ ├── nidss_flu.md │ ├── norostat.md │ ├── norostat_meta.md │ ├── paho_dengue.md │ ├── privacy_statement.md │ ├── quidel.md │ ├── twitter.md │ └── wiki.md ├── developer_support.md ├── epidata_development.md ├── favicon.ico ├── index.md ├── new_endpoint_tutorial.md ├── related_work.md └── symptom-survey │ ├── COVID Symptom Survey Variable Categories.pdf │ ├── codebook.csv │ ├── coding.md │ ├── collaboration-revision.md │ ├── contingency-codebook.csv │ ├── contingency-tables.md │ ├── data-access.md │ ├── end-of-survey.md │ ├── index.md │ ├── limitations.md │ ├── modules.md │ ├── problems.md │ ├── publications.md │ ├── screenshots │ ├── cyberduck-1.png │ ├── cyberduck-2.png │ ├── winscp-small1.png │ └── winscp-small2.png │ ├── server-access.md │ ├── survey-files.md │ ├── survey-utils.R │ ├── symptom-survey-weights.pdf │ ├── waves │ ├── CMU CTIS Wave 12 Full Launch.docx │ ├── CMU CTIS Wave 12 Full Launch.pdf │ ├── CMU Survey Wave 10.docx │ ├── CMU Survey Wave 10.pdf │ ├── CMU Survey Wave 11.docx │ ├── CMU Survey Wave 11.pdf │ ├── CMU Survey Wave 12.docx │ ├── CMU Survey Wave 12.pdf │ ├── CMU Survey Wave 6.docx │ ├── CMU Survey Wave 6.pdf │ ├── CMU Survey Wave 8.docx │ ├── CMU Survey Wave 8.pdf │ ├── CTIS US Wave 13.docx │ ├── CTIS US Wave 13.pdf │ ├── Survey_of_COVID-Like_Illness_-_TODEPLOY-_US_Expansion_-_With_Translations.docx │ ├── Survey_of_COVID-Like_Illness_-_TODEPLOY-_US_Expansion_-_With_Translations.pdf │ ├── Survey_of_COVID-Like_Illness_-_TODEPLOY_2020-04-06.docx │ ├── Survey_of_COVID-Like_Illness_-_TODEPLOY_2020-04-06.pdf │ ├── Survey_of_COVID-Like_Illness_-_TODEPLOY__-_US_Expansion.docx │ ├── Survey_of_COVID-Like_Illness_-_TODEPLOY__-_US_Expansion.pdf │ ├── Survey_of_COVID-Like_Illness_-_Wave_4.docx │ ├── Survey_of_COVID-Like_Illness_-_Wave_4.pdf │ ├── Survey_of_COVID-Like_Illness_-_Wave_4.qsf │ ├── Survey_of_COVID-Like_Illness_-_Wave_5.docx │ ├── Survey_of_COVID-Like_Illness_-_Wave_5.pdf │ ├── Survey_of_COVID-Like_Illness_-_Wave_7.docx │ └── Survey_of_COVID-Like_Illness_-_Wave_7.pdf │ └── weights.md ├── integrations ├── __init__.py ├── acquisition │ ├── covid_hosp │ │ ├── facility │ │ │ ├── __init__.py │ │ │ └── test_scenarios.py │ │ ├── state_daily │ │ │ ├── __init__.py │ │ │ └── test_scenarios.py │ │ └── state_timeseries │ │ │ ├── __init__.py │ │ │ └── test_scenarios.py │ └── covidcast │ │ ├── __init__.py │ │ ├── delete_batch.csv │ │ ├── test_coverage_crossref_update.py │ │ ├── test_covidcast_meta_caching.py │ │ ├── test_csv_uploading.py │ │ ├── test_db.py │ │ └── test_delete_batch.py ├── client │ ├── __init__.py │ ├── test_delphi_epidata.R │ ├── test_delphi_epidata.html │ ├── test_delphi_epidata.js │ └── test_delphi_epidata.py ├── server │ ├── __init__.py │ ├── test_api_keys.py │ ├── test_cdc.py │ ├── test_covid_hosp.py │ ├── test_covidcast.py │ ├── test_covidcast_endpoints.py │ ├── test_covidcast_meta.py │ ├── test_delphi.py │ ├── test_dengue_nowcast.py │ ├── test_dengue_sensors.py │ ├── test_ecdc_ili.py │ ├── test_flusurv.py │ ├── test_fluview.py │ ├── test_fluview_clinical.py │ ├── test_fluview_meta.py │ ├── test_gft.py │ ├── test_ght.py │ ├── test_kcdc_ili.py │ ├── test_meta.py │ ├── test_nidss_dengue.py │ ├── test_nidss_flu.py │ ├── test_norostat.py │ ├── test_nowcast.py │ ├── test_paho_dengue.py │ ├── test_quidel.py │ ├── test_sensors.py │ ├── test_signal_dashboard.py │ ├── test_twitter.py │ └── test_wiki.py └── test_deploy_syntax.py ├── labels ├── articles.txt ├── cities.txt ├── ecdc_regions.txt ├── flusurv_locations.txt ├── nidss_locations.txt ├── nidss_regions.txt ├── regions.txt └── states.txt ├── mypy.ini ├── package.json ├── pyproject.toml ├── requirements.api.txt ├── requirements.dev.txt ├── scripts ├── report_missing_covidcast_meta.py └── signal_spreadsheet_updater.R ├── src ├── acquisition │ ├── cdcp │ │ ├── cdc_dropbox_receiver.py │ │ ├── cdc_extract.py │ │ └── cdc_upload.py │ ├── covid_hosp │ │ ├── README.md │ │ ├── common │ │ │ ├── README.md │ │ │ ├── database.py │ │ │ ├── network.py │ │ │ ├── test_utils.py │ │ │ └── utils.py │ │ ├── facility │ │ │ ├── README.md │ │ │ ├── database.py │ │ │ ├── network.py │ │ │ └── update.py │ │ ├── state_daily │ │ │ ├── README.md │ │ │ ├── database.py │ │ │ ├── network.py │ │ │ └── update.py │ │ └── state_timeseries │ │ │ ├── README.md │ │ │ ├── database.py │ │ │ ├── network.py │ │ │ └── update.py │ ├── covidcast │ │ ├── csv_importer.py │ │ ├── csv_to_database.py │ │ ├── data_dir_readme.md │ │ ├── database.py │ │ ├── file_archiver.py │ │ └── test_utils.py │ ├── ecdc │ │ ├── ecdc_db_update.py │ │ └── ecdc_ili.py │ ├── flusurv │ │ ├── api.py │ │ ├── constants.py │ │ ├── flusurv_update.py │ │ └── reference │ │ │ ├── new_grasp_location_result.json │ │ │ ├── new_grasp_result.json │ │ │ ├── old_grasp_location_result.json │ │ │ └── old_grasp_result.json │ ├── fluview │ │ ├── README.md │ │ ├── fluview.py │ │ ├── fluview_locations.py │ │ ├── fluview_notify.py │ │ ├── fluview_update.py │ │ └── impute_missing_values.py │ ├── ght │ │ ├── ght_update.py │ │ └── google_health_trends.py │ ├── kcdc │ │ └── kcdc_update.py │ ├── nidss │ │ ├── taiwan_nidss.py │ │ └── taiwan_update.py │ ├── paho │ │ ├── paho_db_update.py │ │ └── paho_download.py │ ├── quidel │ │ ├── quidel.py │ │ └── quidel_update.py │ ├── twtr │ │ ├── healthtweets.py │ │ ├── pageparser.py │ │ └── twitter_update.py │ └── wiki │ │ ├── __init__.py │ │ ├── create_wiki_meta_table.sql │ │ ├── create_wiki_raw_table.sql │ │ ├── create_wiki_table.sql │ │ ├── wiki.py │ │ ├── wiki_download.py │ │ ├── wiki_extract.py │ │ ├── wiki_update.py │ │ └── wiki_util.py ├── client │ ├── delphi_epidata.R │ ├── delphi_epidata.d.ts │ ├── delphi_epidata.js │ ├── delphi_epidata.py │ └── packaging │ │ ├── npm │ │ ├── .gitignore │ │ ├── LICENSE │ │ ├── README.md │ │ ├── package-lock.json │ │ ├── package.json │ │ └── tests │ │ │ ├── __snapshots__ │ │ │ └── delphi_epidata.spec.js.snap │ │ │ └── delphi_epidata.spec.js │ │ └── pypi │ │ ├── .bumpversion.cfg │ │ ├── .gitignore │ │ ├── CHANGELOG.md │ │ ├── LICENSE │ │ ├── README.md │ │ ├── delphi_epidata │ │ └── __init__.py │ │ └── pyproject.toml ├── common │ ├── covidcast_row.py │ └── integration_test_base_class.py ├── ddl │ ├── api_user.sql │ ├── cdc.sql │ ├── covid_hosp.sql │ ├── ecdc_ili.sql │ ├── fluview.sql │ ├── forecasts.sql │ ├── gft.sql │ ├── ght.sql │ ├── kcdc_ili.sql │ ├── migrations │ │ ├── covid_hosp_facility_v0.2-v0.3.sql │ │ ├── covid_hosp_facility_v0.3-v0.3.1.sql │ │ ├── covid_hosp_meta_v0.4.4-v0.4.5.sql │ │ ├── covid_hosp_state_v0.2-v0.3.sql │ │ ├── flusurv_age_sex_race_strata.sql │ │ ├── fluview_clinical_v0.1.sql │ │ └── v4_renaming.sql │ ├── nidss.sql │ ├── nowcasts.sql │ ├── paho_dengue.sql │ ├── quidel.sql │ ├── sensors.sql │ ├── signal_dashboard.sql │ ├── twitter.sql │ ├── v4_schema.sql │ ├── v4_schema_aliases.sql │ └── wiki.sql ├── maintenance │ ├── coverage_crossref_updater.py │ ├── covidcast_meta_cache_updater.py │ ├── delete_batch.py │ ├── remove_outdated_keys.py │ ├── signal_dash_data_generator.py │ └── update_last_usage.py └── server │ ├── .htaccess │ ├── README.md │ ├── _common.py │ ├── _config.py │ ├── _db.py │ ├── _exceptions.py │ ├── _limiter.py │ ├── _pandas.py │ ├── _params.py │ ├── _printer.py │ ├── _query.py │ ├── _security.py │ ├── _validate.py │ ├── admin │ ├── __init__.py │ ├── api_key_form_script.js │ ├── models.py │ └── templates │ │ └── index.html │ ├── covidcast_issues_migration │ ├── .gitignore │ ├── proc_db_backups_pd.py │ └── requirements.txt │ ├── endpoints │ ├── __init__.py │ ├── admin.py │ ├── cdc.py │ ├── covid_hosp_facility.py │ ├── covid_hosp_facility_lookup.py │ ├── covid_hosp_state_timeseries.py │ ├── covidcast.py │ ├── covidcast_meta.py │ ├── covidcast_utils │ │ ├── __init__.py │ │ ├── dashboard_signals.py │ │ ├── db_signals.csv │ │ ├── db_sources.csv │ │ ├── descriptions.raw.txt │ │ ├── meta.py │ │ ├── model.py │ │ ├── questions.raw.txt │ │ └── trend.py │ ├── delphi.py │ ├── dengue_nowcast.py │ ├── dengue_sensors.py │ ├── ecdc_ili.py │ ├── flusurv.py │ ├── fluview.py │ ├── fluview_clinicial.py │ ├── fluview_meta.py │ ├── gft.py │ ├── ght.py │ ├── ilinet.py │ ├── kcdc_ili.py │ ├── meta.py │ ├── meta_norostat.py │ ├── nidss_dengue.py │ ├── nidss_flu.py │ ├── norostat.py │ ├── nowcast.py │ ├── paho_dengue.py │ ├── quidel.py │ ├── sensors.py │ ├── signal_dashboard_coverage.py │ ├── signal_dashboard_status.py │ ├── twitter.py │ └── wiki.py │ ├── index.html │ ├── main.py │ ├── simulate_api_response.py │ └── utils │ ├── __init__.py │ └── dates.py ├── tasks.py ├── testdata └── acquisition │ └── covid_hosp │ ├── common │ ├── metadata.csv │ └── metadata.json │ ├── facility │ ├── dataset.csv │ ├── dataset_update_facility.csv │ ├── metadata.csv │ └── metadata_update_facility.csv │ ├── state_daily │ ├── dataset.csv │ ├── metadata.csv │ └── metadata2.csv │ └── state_timeseries │ ├── dataset.csv │ ├── dataset2.csv │ ├── metadata.csv │ └── metadata2.csv └── tests ├── acquisition ├── covid_hosp │ ├── common │ │ ├── __init__.py │ │ ├── test_database.py │ │ ├── test_network.py │ │ └── test_utils.py │ ├── facility │ │ ├── __init__.py │ │ ├── test_database.py │ │ ├── test_network.py │ │ └── test_update.py │ ├── state_daily │ │ ├── __init__.py │ │ ├── test_database.py │ │ ├── test_network.py │ │ └── test_update.py │ └── state_timeseries │ │ ├── __init__.py │ │ ├── test_database.py │ │ ├── test_network.py │ │ └── test_update.py ├── covidcast │ ├── __init__.py │ ├── test_csv_importer.py │ ├── test_csv_to_database.py │ ├── test_database.py │ └── test_file_archiver.py ├── flusurv │ ├── __init__.py │ ├── test_flusurv.py │ └── test_flusurv_update.py └── fluview │ ├── __init__.py │ └── test_impute_missing_values.py ├── client ├── __init__.py └── 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