├── .Rbuildignore ├── .git-blame-ignore-revs ├── .github ├── .gitignore ├── CODEOWNERS ├── pull_request_template.md └── workflows │ ├── R-CMD-check.yaml │ ├── doc-preview.yaml │ ├── pkgdown.yaml │ └── pr-commands.yaml ├── .gitignore ├── .lintr ├── DESCRIPTION ├── DEVELOPMENT.md ├── LICENSE ├── LICENSE.md ├── Makefile ├── NAMESPACE ├── NEWS.md ├── R ├── arx_classifier.R ├── arx_forecaster.R ├── autoplot.R ├── blueprint-epi_recipe-default.R ├── canned-epipred.R ├── cdc_baseline_forecaster.R ├── check_enough_data.R ├── climatological_forecaster.R ├── compat-purrr.R ├── compat-recipes.R ├── epi_check_training_set.R ├── epi_recipe.R ├── epi_selectors.R ├── epi_shift.R ├── epi_workflow.R ├── epipredict-package.R ├── extract.R ├── extrapolate_quantiles.R ├── flatline.R ├── flatline_forecaster.R ├── flusight_hub_formatter.R ├── frosting.R ├── get_test_data.R ├── import-standalone-purrr.R ├── key_colnames.R ├── layer_add_forecast_date.R ├── layer_add_target_date.R ├── layer_cdc_flatline_quantiles.R ├── layer_naomit.R ├── layer_point_from_distn.R ├── layer_population_scaling.R ├── layer_predict.R ├── layer_predictive_distn.R ├── layer_quantile_distn.R ├── layer_residual_quantiles.R ├── layer_threshold_preds.R ├── layer_unnest.R ├── layers.R ├── make_flatline_reg.R ├── make_grf_quantiles.R ├── make_quantile_reg.R ├── make_smooth_quantile_reg.R ├── model-methods.R ├── pivot_quantiles.R ├── print_epi_step.R ├── print_layer.R ├── quantile_pred-methods.R ├── reexports-tidymodels.R ├── reexports.R ├── step_adjust_latency.R ├── step_climate.R ├── step_epi_naomit.R ├── step_epi_shift.R ├── step_epi_slide.R ├── step_growth_rate.R ├── step_lag_difference.R ├── step_population_scaling.R ├── step_training_window.R ├── tidy.R ├── time_types.R ├── utils-arg.R ├── utils-latency.R ├── utils-misc.R ├── utils-pipe.R ├── weighted_interval_score.R ├── workflow-printing.R └── zzz.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── epipredict.Rproj ├── inst └── other-vignettes │ └── symptom-surveys.Rmd ├── man-roxygen └── step-return.R ├── man ├── Add_model.Rd ├── add_epi_recipe.Rd ├── add_frosting.Rd ├── add_layer.Rd ├── add_shifted_columns.Rd ├── adjust_epi_recipe.Rd ├── adjust_frosting.Rd ├── apply_frosting.Rd ├── arx_args_list.Rd ├── arx_class_args_list.Rd ├── arx_class_epi_workflow.Rd ├── arx_classifier.Rd ├── arx_fcast_epi_workflow.Rd ├── arx_forecaster.Rd ├── augment.epi_workflow.Rd ├── autoplot-epipred.Rd ├── cdc_baseline_args_list.Rd ├── cdc_baseline_forecaster.Rd ├── check_enough_data.Rd ├── check_interminable_latency.Rd ├── clean_f_name.Rd ├── climate_args_list.Rd ├── climatological_forecaster.Rd ├── construct_shift_tibble.Rd ├── count_single_column.Rd ├── dist_quantiles.Rd ├── drop_ignored_keys.Rd ├── epi_recipe.Rd ├── epi_shift_single.Rd ├── epi_slide_wrapper.Rd ├── epi_workflow.Rd ├── epiweek_leap.Rd ├── extract_argument.Rd ├── extract_frosting.Rd ├── extrapolate_quantiles.Rd ├── figures │ ├── README-date-1.png │ ├── README-show-processed-data-1.png │ ├── README-show-single-forecast-1.png │ ├── lifecycle-archived.svg │ ├── lifecycle-defunct.svg │ ├── lifecycle-deprecated.svg │ ├── lifecycle-experimental.svg │ ├── lifecycle-maturing.svg │ ├── lifecycle-questioning.svg │ ├── lifecycle-soft-deprecated.svg │ ├── lifecycle-stable.svg │ └── lifecycle-superseded.svg ├── fit-epi_workflow.Rd ├── flatline.Rd ├── flatline_args_list.Rd ├── flatline_forecaster.Rd ├── flusight_hub_formatter.Rd ├── forecast.epi_workflow.Rd ├── format_varnames.Rd ├── frosting.Rd ├── get_forecast_date.Rd ├── get_forecast_date_in_layer.Rd ├── get_latency.Rd ├── get_latency_table.Rd ├── get_sign.Rd ├── get_test_data.Rd ├── grf_quantiles.Rd ├── is_epi_recipe.Rd ├── is_epi_workflow.Rd ├── isoweek_leap.Rd ├── layer-processors.Rd ├── layer.Rd ├── layer_add_forecast_date.Rd ├── layer_add_target_date.Rd ├── layer_cdc_flatline_quantiles.Rd ├── layer_naomit.Rd ├── layer_point_from_distn.Rd ├── layer_population_scaling.Rd ├── layer_predict.Rd ├── layer_predictive_distn.Rd ├── layer_quantile_distn.Rd ├── layer_residual_quantiles.Rd ├── layer_threshold.Rd ├── layer_unnest.Rd ├── nested_quantiles.Rd ├── new_epi_recipe_blueprint.Rd ├── pad_to_end.Rd ├── pipe.Rd ├── pivot_quantiles.Rd ├── predict-epi_workflow.Rd ├── quantile.quantile_pred.Rd ├── quantile_reg.Rd ├── reexports.Rd ├── roll_modular_multivec.Rd ├── seq_forward.Rd ├── slather.Rd ├── smooth_quantile_reg.Rd ├── snap.Rd ├── step_adjust_latency.Rd ├── step_adjust_latency_checks.Rd ├── step_climate.Rd ├── step_epi_naomit.Rd ├── step_epi_shift.Rd ├── step_epi_slide.Rd ├── step_growth_rate.Rd ├── step_lag_difference.Rd ├── step_population_scaling.Rd ├── step_training_window.Rd ├── tidy.frosting.Rd ├── update.layer.Rd ├── weighted_interval_score.Rd ├── within_window.Rd └── yday_leap.Rd ├── pkgdown-watch.R ├── tests ├── testthat.R └── testthat │ ├── _snaps │ ├── arg_is_.md │ ├── arx_args_list.md │ ├── arx_cargs_list.md │ ├── bake-method.md │ ├── check-training-set.md │ ├── check_enough_data.md │ ├── climatological_forecaster.md │ ├── epi_recipe.md │ ├── epi_workflow.md │ ├── extract_argument.md │ ├── flatline_args_list.md │ ├── frosting.md │ ├── get_test_data.md │ ├── layer_add_forecast_date.md │ ├── layer_add_target_date.md │ ├── layer_residual_quantiles.md │ ├── layers.md │ ├── parse_period.md │ ├── parsnip_model_validation.md │ ├── pivot_quantiles.md │ ├── population_scaling.md │ ├── quantile_pred.md │ ├── shuffle.md │ ├── snapshots.md │ ├── step_adjust_latency.md │ ├── step_epi_naomit.md │ ├── step_epi_shift.md │ ├── step_epi_slide.md │ ├── step_growth_rate.md │ ├── step_lag_difference.md │ └── wis-quantile_pred.md │ ├── test-arg_is_.R │ ├── test-arx_args_list.R │ ├── test-arx_cargs_list.R │ ├── test-arx_forecaster.R │ ├── test-bake-method.R │ ├── test-blueprint.R │ ├── test-check-training-set.R │ ├── test-check_enough_data.R │ ├── test-climatological_forecaster.R │ ├── test-epi_recipe.R │ ├── test-epi_shift.R │ ├── test-epi_workflow.R │ ├── test-extract_argument.R │ ├── test-flatline_args_list.R │ ├── test-frosting.R │ ├── test-get_test_data.R │ ├── test-grf_quantiles.R │ ├── test-key_colnames.R │ ├── test-layer_add_forecast_date.R │ ├── test-layer_add_target_date.R │ ├── test-layer_naomit.R │ ├── test-layer_predict.R │ ├── test-layer_residual_quantiles.R │ ├── test-layer_threshold_preds.R │ ├── test-layers.R │ ├── test-parse_period.R │ ├── test-parsnip_model_validation.R │ ├── test-pivot_quantiles.R │ ├── test-population_scaling.R │ ├── test-quantile_pred.R │ ├── test-replace_Inf.R │ ├── test-shuffle.R │ ├── test-snapshots.R │ ├── test-step_adjust_latency.R │ ├── test-step_climate.R │ ├── test-step_epi_naomit.R │ ├── test-step_epi_shift.R │ ├── test-step_epi_slide.R │ ├── test-step_growth_rate.R │ ├── test-step_lag_difference.R │ ├── test-step_training_window.R │ ├── test-target_date_bug.R │ ├── test-utils_latency.R │ └── test-wis-quantile_pred.R └── vignettes ├── .gitignore ├── _common.R ├── articles ├── 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