├── .gitignore ├── LICENSE ├── README.md ├── pytetrad ├── Images.py ├── R │ ├── DOCUMENTATION.md │ ├── INSTALLATION.md │ ├── README.md │ ├── TetradSearch.R │ ├── local_setup_untested.R │ ├── my_functions.R │ ├── sample_r_code1.R │ ├── sample_r_code10.R │ ├── sample_r_code11.R │ ├── sample_r_code12.R │ ├── sample_r_code2.R │ ├── sample_r_code3.R │ ├── sample_r_code4.R │ ├── sample_r_code5.R │ ├── sample_r_code6.R │ ├── sample_r_code7.R │ ├── sample_r_code8.R │ ├── sample_r_code9.R │ └── tetrad_utils.R ├── __init__.py ├── adjustment_sets_example.py ├── algcomparison_fci_algs.py ├── algcomparison_large_fges.py ├── bayes_est_example.py ├── compare_projects_fci.py ├── compare_projects_ges.py ├── compare_projects_pc.py ├── convert_datasets.py ├── general_scoring_example.py ├── jpype_example.py ├── knowledge_example.py ├── proxy_testing.py ├── render_gdot.py ├── resources │ ├── airfoil-self-noise.continuous.txt │ ├── auto-mpg.data.mixed.max.3.categories.txt │ ├── aw-fb-pruned18.data.mixed.numeric.txt │ ├── bridges.data.version21.txt │ ├── bridges.data.version211_rev.txt │ ├── diabetes.data.d.txt │ ├── example_sim_100-2-1000.txt │ ├── example_sim_100-6-1000.txt │ ├── fofc_data.txt │ ├── knowledge.txt │ ├── mimbuild_example_data.txt │ ├── sample_discrete.txt │ ├── sample_lng_data_10_2_1000.txt │ └── tetrad-current.jar ├── run_TetradSearch.py ├── run_continuous.py ├── run_discrete.py ├── run_general_pc_various_ways.py ├── run_markov_checker.py ├── run_mixed.py ├── run_with_bootstrapping.py ├── simulate_continuous.py ├── simulate_discrete.py ├── simulate_lee_hastie.py └── tools │ ├── TetradSearch.py │ ├── WrappedClKci.py │ ├── __init__.py │ ├── cpn.py │ ├── cpn_example.py │ ├── simulate.py │ ├── translate.py │ └── visualize.py └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cmu-phil/py-tetrad/HEAD/.gitignore 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