├── .github └── workflows │ └── build.yml ├── LICENSE ├── README.md ├── configfiles ├── evaluate_80S_128.ini ├── mrc2star_80S_128.ini └── train_80S_128.ini ├── docker ├── Dockerfile └── README.md ├── evaluation_starfiles └── README.md ├── logs └── README.md ├── mrcfiles ├── 80S_128.mrc └── README.md ├── pretrained_models └── 80S_128 │ ├── config_generate_synthetic.ini │ ├── config_train.ini │ └── model_final.pth ├── requirements.txt ├── run_from_config.sh ├── simulated_starfiles └── README.md └── src ├── .DS_Store ├── __init__.py ├── __pycache__ ├── __init__.cpython-38.pyc ├── geom_utils.cpython-38.pyc ├── mrc_utils.cpython-38.pyc ├── test_alignment.cpython-38.pyc └── utils.cpython-38.pyc ├── copy_mrcs.py ├── cryoai.py ├── ctf_utils.py ├── dataio.py ├── filter_utils.py ├── geom_utils.py ├── loss_utils.py ├── mask_utils.py ├── ml_modules.py ├── mrc_utils.py ├── noise_utils.py ├── reconstruct ├── __init__.py ├── evaluate_encoder.py ├── generate_synthetic.py ├── main.py └── train.py ├── 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