├── .github └── workflows │ └── ci-ubuntu.yml ├── .gitignore ├── 00_Genray_Regression_Tests ├── EC_ITER_Central_CD.png ├── EC_ITER_Central_CD.ps ├── ECcone_optimal.dat ├── ECcone_optimal.dat_test10.1 ├── Prater_NF2008_Fig12+ADJ.odp ├── Prater_NF2008_Fig12.pdf ├── Prater_NF2008_Fig12.png ├── README ├── README_genray ├── Scen4_bn2.57_129x129 ├── ci-tests │ ├── .cleanrun.sh.swp │ ├── cleanrun.sh │ ├── test-CMod-LH-edge-id16 │ │ ├── g1060728011.01100 │ │ ├── genray.in │ │ └── gold-genray.nc │ ├── test-CMod-LH-edge │ │ ├── g1060728011.01100 │ │ ├── genray.in │ │ └── gold-genray.nc │ ├── test-EC-ITER-Centra-CD │ │ ├── equilib.dat │ │ ├── genray.dat │ │ └── gold-genray.nc │ └── test.sh ├── cur_den_test7.ps ├── delpwr.bin_test9 ├── dens.bin ├── drawdelpwr_lsc.in ├── drawem.in ├── drawfreqelec.in ├── drawgenr.in ├── drawonet1.in ├── drawonet2.in ├── emis.bin_113544.00325_mod ├── emis.bin_SS_Xmode_180_emission ├── emis.bin_test1 ├── emis.bin_test3 ├── eqdsk_MAST-like ├── equilib.dat ├── equilib.dat_EC_ITER_Central_CD ├── equilib.dat_HPRT_test_case_061219 ├── g1060728011.01100 ├── g106270.02500 ├── g113544.00325_mod ├── g521022.01000 ├── genray.bin_105830p193r1.bob ├── genray.bin_113544.00325_mod ├── genray.bin_CANONICAL_2004_ITER_TEST_one_ray ├── genray.bin_CMod_LH_edge ├── genray.bin_SS_Xmode_180_emission ├── genray.bin_id10iabsorp1 ├── genray.bin_shot106270 ├── genray.bin_test1 ├── genray.bin_test10 ├── genray.bin_test2 ├── genray.bin_test3 ├── genray.bin_test4.1 ├── genray.bin_test5 ├── genray.bin_test5.1 ├── genray.bin_test6 ├── genray.bin_test7 ├── genray.bin_test7_edge_dens_rz ├── genray.bin_test9 ├── genray.dat_113544.00325_mod ├── genray.dat_CANONICAL_2004_ITER_TEST_one_ray ├── genray.dat_EC_ITER_Central_CD ├── genray.dat_EC_ITER_Central_CD_ieffic3 ├── genray.dat_EC_ITER_Central_CD_ieffic4 ├── genray.dat_EC_ITER_Central_CD_ieffic4_mom_cons ├── genray.dat_EC_ITER_Central_CD_ieffic6 ├── genray.dat_GT_PoP2005_i_ox=1.1 ├── genray.dat_GT_PoP2005_i_ox=1.1_updtd ├── genray.dat_GT_PoP2005_id6_i_ox2_090720 ├── genray.dat_HPRT_test_case_061219 ├── genray.dat_SS_Xmode_180_emission ├── genray.dat_id10iabsorp1 ├── genray.dat_shot106270_multi_ray_multi_cone ├── genray.in_CMod_LH_edge ├── genray.in_CMod_LH_edge_LSC ├── genray.in_CMod_LH_edge_id16 ├── genray.in_i_edge_dens_rz_mesh=1 ├── genray.in_i_edge_dens_rz_mesh=2 ├── genray.in_test10 ├── genray.in_test10.1 ├── genray.in_test7_ec ├── idl_105830p193r1.bob_GR030417.4_gr061120.ps ├── idl_emission_spectrum_colorbar.pro ├── log_tests ├── onetwo1.bin_EC_ITER_Central_CD ├── onetwo1.bin_test7 ├── onetwo1.bin_test7.1 ├── pwr_den_test7.ps ├── tests ├── tests.sh ├── testsG.sh ├── tests_genray ├── xdraw.ini ├── xdraw_em_SS_Xmode_180_emission.ps ├── xdraw_genr_SS_Xmode_180_emission.ps ├── xdraw_genr_test7_rays.pdf ├── xdraw_genr_test7_rays.ps └── zrn.dat ├── Brief_genray_use_outline ├── CRAY_pgplot.txt ├── CTestConfig.cmake ├── CTestCustom.cmake ├── CTestTestfile.cmake ├── LICENSE ├── README ├── README.ubuntu-18.04.md ├── README_genray_devel ├── README_genray_overview ├── README_git ├── README_test ├── a_change.i ├── abc.f ├── abhay_disp.f ├── absorpfw.f ├── absorplh.f ├── absorplh1.f ├── adj.i ├── adj_control.f ├── adj_nml.i ├── adj_no_nml.i ├── adj_orbit.f ├── adj_prof.i ├── adj_real8.f ├── adj_sub.f ├── adj_vmlibpr.f ├── antenna.i ├── arrays.f ├── b.f ├── bcast.f ├── besk.f ├── besk2as.f ├── bess_slatec.f ├── bessel.f ├── besvec.f ├── bound.f ├── bripplb.i ├── cefield.i ├── chamber_wall.f ├── cn.f ├── cninit.f ├── cnpermuz.f ├── coldm.f ├── combine_disp.f ├── commons.i ├── complx.f ├── cone.i ├── cone_ec.f ├── cone_nml.i ├── cone_no_nml.i ├── config_ext.f90 ├── const_and_precisions.f90 ├── contour.f ├── cori_batchscript_mpi ├── cori_batchscript_mpi_gnu ├── croot.f ├── curba.f ├── curba_GA.f ├── dcom16.f ├── dddrz1.f ├── dense.f ├── dense_new.f ├── dinit.f ├── dinit.f.new ├── dinit_nml.i ├── distn.f ├── dmnf.f ├── dskin.f ├── dskin.i ├── dten16.f ├── dxdphi.f ├── dxdr.f ├── dxdz.f ├── dxrz.f ├── dydphi.f ├── dydr.f ├── dydz.f ├── edge_prof.i ├── edge_prof_nml.i ├── edge_prof_no_nml.i ├── efield.f ├── efield1.f ├── emissa.f ├── emissa.i ├── emissa_nml.i ├── emissa_no_nml.i ├── emission.diff_DM ├── emission.f ├── emission.for_DM ├── emission_spectrum.f ├── eps.i ├── equilib.f ├── equilib.f_genray ├── eric_disp.f ├── eric_disp.f_orig ├── five.i ├── flown.f ├── fokker.f ├── forest.f ├── forest_080829.f ├── fourb.i ├── fourb_t.i ├── gamma.f ├── genray.f ├── genray.f_hopper ├── genray.f_to_100507 ├── genray_help ├── genray_par.f_hopper ├── genray_plots.py ├── genray_plots.py_to_170714 ├── genray_plots_200816.py ├── genray_plots_Yang_TAE_Mac.py ├── genray_templates_archive ├── genray.dat_template_to_090130 ├── genray.dat_template_to_090406 ├── genray.dat_template_to_090505 ├── genray.dat_template_to_090901 ├── genray.dat_template_to_091220 ├── genray.dat_template_to_110503 ├── genray.dat_template_to_111011 ├── genray.dat_template_to_111031 ├── genray.dat_template_to_120401 ├── genray.dat_template_to_140701 ├── genray.dat_template_to_140801 ├── genray.dat_template_to_151018 ├── genray.dat_template_to_180402 ├── genray.dat_template_to_180518 ├── genray.dat_template_to_180529 ├── genray.in_template_MKSA_090130 ├── genray.in_template_MKSA_090406 ├── genray.in_template_MKSA_090505 ├── genray.in_template_MKSA_090901 ├── genray.in_template_MKSA_091220 ├── genray.in_template_MKSA_110503 ├── genray.in_template_MKSA_111011 ├── genray.in_template_MKSA_111031 ├── genray.in_template_MKSA_111031_nb ├── genray.in_template_MKSA_120401 ├── genray.in_template_MKSA_140701 ├── genray.in_template_MKSA_140801 ├── genray.in_template_MKSA_151018 ├── genray.in_template_MKSA_180402 ├── genray.in_template_MKSA_180518 ├── genray.in_template_MKSA_180529 └── genray.in_template_MKSA_191207 ├── globcd.h ├── globcd1.h ├── globcd2.h ├── gr.i ├── gr2new.f ├── gr3.f ├── gradient.f ├── green_func_ext.f90 ├── grep_eccone ├── grep_grill ├── grill.i ├── grill_lh.f ├── grill_lh.f_151110 ├── grill_nml.i ├── grill_no_nml.i ├── hamilmuz.f ├── hamilt1.f ├── hamilt_lambda.f ├── intel-module_portal_pppl.csh ├── intel-mpi-module_portal_pppl.csh ├── intinit.f ├── ions.i ├── ions_nml.i ├── kind_spec.f90 ├── lh_bonoli_disp.f ├── lh_ql_flux.f ├── lh_scattering.f ├── limit.i ├── limiter.f ├── lin_liu_curnt.f ├── loopb.i ├── lsc_approach.f ├── lsc_approach.i ├── lsc_approach_nml.i ├── lsc_approach_no_nml.i ├── make_archive ├── cori_batchscript_mpi ├── makefile ├── makefile_ericnm ├── makefile_franklin_pathscale ├── makefile_franklin_pgi ├── makefile_g95 ├── makefile_g95_czech_cql ├── makefile_g95_czech_genray ├── makefile_gfortran.CentOS ├── makefile_gfortran64 ├── makefile_gfortran64.bob9 ├── makefile_gfortran64.bob9.CentOS ├── makefile_gfortran64.edison ├── makefile_gfortran64_Yang_TAE_Mac ├── makefile_gfortran64_Yang_TAE_laptop ├── makefile_gfortran64_bound_check_1 ├── makefile_gfortran64_crpppc70 ├── makefile_gfortran64_czech ├── makefile_gfortran64_debug ├── makefile_gfortran64_debug_BOUND_CHECK ├── makefile_gfortran64_debug_BOUND_CHECK.CentOS ├── makefile_gfortran64_debug_BOUND_CHECK_Kumar ├── makefile_gfortran64_debug_BOUND_CHECK_read_write ├── makefile_gfortran64_new_libpgplot.compx1 ├── makefile_gfortran64_test ├── makefile_ifc_pleiades ├── makefile_ifort_VIZ ├── makefile_ifort_pleiades2 ├── makefile_ifort_stix_pppl ├── makefile_intel.edison ├── makefile_intel.hopper ├── makefile_jaguar ├── makefile_lf64 ├── makefile_lf95 ├── makefile_lf95_crpppc138 ├── makefile_lf95_delphi ├── makefile_lf95_marshall ├── makefile_lf95_petrel001 ├── makefile_lf95_portal ├── makefile_lf95_read_write_namelists ├── makefile_lf95_sap ├── makefile_lf95_sap_read_write_namelists ├── makefile_lf95_static ├── makefile_mpi.franklin ├── makefile_mpi.gfortran64 ├── makefile_mpi.gfortran64.CentOS ├── makefile_mpi.gfortran64.bob9 ├── makefile_mpi.gfortran64.bob9.CentOS ├── makefile_mpi.gfortran64_hopper ├── makefile_mpi_franklin_pathscale ├── makefile_mpi_intel.cori ├── makefile_mpi_intel.edison ├── makefile_mpi_intel.hopper ├── makefile_mpi_lf95 ├── makefile_mpi_lf95_crpppc138 ├── makefile_mpi_lf95_petrel001 ├── makefile_mpi_lf95_portal ├── makefile_mpi_pathscale.hopper ├── makefile_mpi_pathscale_portal_pppl ├── makefile_mpi_pgi.hopper ├── makefile_mpi_pleiades ├── makefile_nowrite_franklin_pathscale ├── makefile_nowrite_franklin_pgi ├── makefile_nowrite_gfortran64 ├── makefile_nowrite_gfortran64.CentOS ├── makefile_nowrite_gfortran64_crpppc70 ├── makefile_nowrite_gfortran64_debug ├── makefile_nowrite_gfortran_bob7 ├── makefile_nowrite_ifort_VIZ ├── makefile_nowrite_jaguar ├── makefile_nowrite_lf95 ├── makefile_nowrite_lf95_delphi ├── makefile_nowrite_lf95_portal ├── makefile_nowrite_pathscale_portal_pppl ├── makefile_pathscale.hopper ├── makefile_pathscale_nowrite.hopper ├── makefile_pathscale_portal_pppl ├── makefile_pgi.hopper ├── makefile_pgi_ga_benten ├── makefile_pgi_ga_lohan6 ├── makefile_pgi_lohan5 ├── makefile_pgi_nowrite.hopper ├── makefile_pgi_nowrite_ga_benten ├── makefile_pgi_nowrite_ga_lohan6 ├── makefile_pgi_nowrite_lohan5 ├── makefile_read_write_namelists_alternate └── makefile_swim ├── makefile_gfortran.CentOS ├── makefile_gfortran.CentOS7 ├── makefile_gfortran.CentOS7.1 ├── makefile_gfortran64 ├── makefile_gfortran64_debug_BOUND_CHECK.CentOS ├── makefile_gfortran64_debug_BOUND_CHECK.CentOS7 ├── makefile_mpi.gfortran64 ├── makefile_mpi_gnu.cori ├── makefile_mpi_intel.cori ├── makefile_nowrite_gfortran64.CentOS ├── mathcurb.f ├── md03ua_real8.f ├── minimization.f ├── mk_graph.f ├── mk_graph.g_100921_old ├── mmdei.f ├── mpi ├── README ├── auto ├── auto.cpp ├── cmm ├── cmm.cpp ├── makefile ├── mpi.ins ├── mpi.ins_hopper ├── mpi.ins_notworking ├── mpi.ins_to_111102 ├── mpi.ins_to_130508 ├── mpi.ins_to_130509 ├── mpi.ins_zip ├── mpi.sh ├── mpi.zip.safe ├── update.py ├── update.py.obsolete └── write.i ├── mullerfun2.f ├── n_parb.i ├── n_ray.f ├── name.i ├── name_adj.i ├── name_eccone.i ├── name_edge_prof_nml.i ├── name_genr.i ├── name_grill.i ├── name_lsc_approach_nml.i ├── name_non_uniform_mesh_profiles_line.i ├── name_tokamak.i ├── name_uniform_mesh_profiles.i ├── netcdf.inc ├── netcdfr3d.f ├── ninit_ec.f ├── nperpcom.i ├── number1.f ├── one.i ├── one_nml.i ├── one_no_nml.i ├── onetwo.i ├── onetwo_nml.i ├── onetwo_no_nml.i ├── ono_disp.f ├── outinit.f ├── output.f ├── output.f_new ├── output.i ├── output_nml.i ├── output_no_nml.i ├── outputb1.f ├── oxb.f ├── oxb.i ├── p_c_prof_lsc.f ├── param.i ├── partner.f ├── pathscale-module_portal_pppl.csh ├── pgconst.i ├── pinsk_1.f ├── pinsk_2.f ├── plasmray.f ├── plot_dens.f ├── plot_n_perp_omega.f ├── prep3d.diff_DM ├── prep3d.f ├── prepripl.f ├── pyctest-runner.py ├── quanc8.f90 ├── read_write_genray_input.f ├── read_write_genray_input_prep.f ├── read_write_genray_input_prep.f_to_170714 ├── relat_tens.f ├── rho.i ├── rhospl.f ├── rk_new.f ├── rkb1.f ├── rkutta.i ├── rrange.i ├── rrind.f ├── rside1.f ├── rsideb1.f ├── s.f ├── scatnper.i ├── scatnper_nml.i ├── scatnper_no_nml.i ├── scatperp.f ├── sdr1.f ├── se.f ├── shkarofs.f ├── six.i ├── six_nml.i ├── six_no_nml.i ├── slatec_ram.f ├── spldens.f ├── spline.f ├── spline_distrib.i ├── stop.f ├── svn-commit.tmp ├── t.f ├── tensrcld.f ├── test_integration.f ├── test_read_write_namelists.f ├── test_read_write_namelists ├── README ├── bcast.f ├── genray.in ├── genray.in_test7 ├── log_read_write_debug ├── makefile_read_write_namelists ├── makefile_read_write_namelists_debug ├── partner.f ├── read_write_genray_input.f ├── test_read_write_namelists.f └── zcunix.f ├── three.i ├── transport_prof.i ├── uertst.f ├── ugetio.f ├── uspkd.f ├── wall.f ├── wall_090325.f ├── wall_density.f ├── wconvini.f ├── write.i ├── write3d.f ├── writencdf.i ├── writencdf_one_ray_point.i ├── x.f ├── xdraw.tar.gz ├── xdraw ├── README ├── README_xdraw ├── binread.c ├── curves.h ├── dcon.bin ├── device.h ├── draw.in ├── event.c ├── gendefs.h ├── gldraw.h ├── glx.c ├── glx.h ├── limits.c ├── makefile ├── makefile_franklin ├── makefile_mainline ├── menu.c ├── menu.h ├── menuwin.c ├── menuwin.h ├── ps.c ├── ps.h ├── pspack.c ├── pspack.h ├── redraw.c ├── setcolor.c ├── setcolor.h ├── smaller.c ├── spline.c ├── spline.h ├── spline1.c ├── wdraw.c ├── wdraw.h ├── wtest.c ├── wtest.h ├── xcontour.c ├── xcontour.h ├── xdata.c ├── xdialog.c ├── xdialog.h ├── xdraw ├── xdraw.c ├── xdraw.h ├── xdrawa.ps ├── xdrawb.ps ├── xdrawc.ps ├── xdrawd.ps ├── xdrawe.ps ├── xdrawf.ps ├── xdump.c ├── xedit.c ├── xedit.h ├── xinit.c ├── xinit.h ├── xmotif.c ├── xmslib.c ├── xortest.c ├── xtools.c ├── xtools.h ├── xtoolsm.c └── xwinlib.c ├── xdraw_inputs.tar.gz ├── xdraw_inputs ├── README ├── README_xdraw ├── drawabsr.in ├── drawcur.in ├── drawcur.in_w_wtheta ├── drawdelpwr_lsc.in ├── drawdens.in ├── drawebw.in ├── drawefield.in ├── drawefieldrho.in ├── drawem.in ├── drawem1.in ├── drawemf1.in ├── drawemfr.in ├── drawemfr1.in ├── drawemis.in ├── drawemres.in ├── draweps_i.in 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