├── .github └── workflows │ ├── codespell.yml │ └── python-test.yml ├── .gitignore ├── .travis.yml ├── CONTRIBUTE.md ├── LICENSE.md ├── MANIFEST.in ├── Makefile ├── README.md ├── codecov.yml ├── docs ├── analysis.md ├── api.md ├── clustering.md ├── customization.md ├── index.md ├── plugins.md ├── release.md ├── shortcuts.md ├── sorting_user_guide.md ├── terminology.md ├── troubleshooting.md └── visualization.md ├── environment.yml ├── installer ├── install.bat └── install.sh ├── mkdocs.yml ├── phy ├── __init__.py ├── apps │ ├── __init__.py │ ├── base.py │ ├── kwik │ │ ├── __init__.py │ │ ├── gui.py │ │ ├── static │ │ │ └── state.json │ │ └── tests │ │ │ ├── __init__.py │ │ │ └── test_gui.py │ ├── template │ │ ├── __init__.py │ │ ├── gui.py │ │ ├── static │ │ │ └── state.json │ │ └── tests │ │ │ ├── __init__.py │ │ │ └── test_gui.py │ ├── tests │ │ ├── __init__.py │ │ └── test_base.py │ └── trace │ │ ├── __init__.py │ │ ├── gui.py │ │ └── tests │ │ ├── __init__.py │ │ └── test_gui.py ├── cluster │ ├── __init__.py │ ├── _history.py │ ├── _utils.py │ ├── clustering.py │ ├── supervisor.py │ ├── tests │ │ ├── __init__.py │ │ ├── conftest.py │ │ ├── test_clustering.py │ │ ├── test_history.py │ │ ├── test_supervisor.py │ │ └── test_utils.py │ └── views │ │ ├── __init__.py │ │ ├── amplitude.py │ │ ├── base.py │ │ ├── cluscatter.py │ │ ├── correlogram.py │ │ ├── feature.py │ │ ├── histogram.py │ │ ├── probe.py │ │ ├── raster.py │ │ ├── scatter.py │ │ ├── template.py │ │ ├── tests │ │ ├── __init__.py │ │ ├── conftest.py │ │ ├── test_amplitude.py │ │ ├── test_base.py │ │ ├── test_cluscatter.py │ │ ├── test_correlogram.py │ │ ├── test_feature.py │ │ ├── test_histogram.py │ │ ├── test_probe.py │ │ ├── test_raster.py │ │ ├── test_scatter.py │ │ ├── test_template.py │ │ ├── test_trace.py │ │ └── test_waveform.py │ │ ├── trace.py │ │ └── waveform.py ├── conftest.py ├── gui │ ├── __init__.py │ ├── actions.py │ ├── gui.py │ ├── qt.py │ ├── state.py │ ├── static │ │ ├── fa-solid-900.ttf │ │ ├── icons │ │ │ ├── f015.png │ │ │ ├── f01e.png │ │ │ ├── f060.png │ │ │ ├── f061.png │ │ │ ├── f0a8.png │ │ │ ├── f0a9.png │ │ │ ├── f0c7.png │ │ │ ├── f0e2.png │ │ │ └── f247.png │ │ ├── index.html │ │ ├── list.min.js │ │ ├── styles.css │ │ └── table.min.js │ ├── tests │ │ ├── __init__.py │ │ ├── conftest.py │ │ ├── test_actions.py │ │ ├── test_gui.py │ │ ├── test_qt.py │ │ ├── test_state.py │ │ └── test_widgets.py │ └── widgets.py ├── plot │ ├── __init__.py │ ├── axes.py │ ├── base.py │ ├── gloo │ │ ├── __init__.py │ │ ├── array.py │ │ ├── atlas.py │ │ ├── buffer.py │ │ ├── framebuffer.py │ │ ├── gl.py │ │ ├── globject.py │ │ ├── gpudata.py │ │ ├── parser.py │ │ ├── program.py │ │ ├── shader.py │ │ ├── snippet.py │ │ ├── texture.py │ │ ├── uniforms.py │ │ └── variable.py │ ├── glsl │ │ ├── constants.glsl │ │ ├── histogram.frag │ │ ├── histogram.vert │ │ ├── image.frag │ │ ├── image.vert │ │ ├── line.frag │ │ ├── line.vert │ │ ├── line_agg_geom.frag │ │ ├── line_agg_geom.geom │ │ ├── line_agg_geom.vert │ │ ├── markers │ │ │ ├── arrow.glsl │ │ │ ├── asterisk.glsl │ │ │ ├── chevron.glsl │ │ │ ├── clover.glsl │ │ │ ├── club.glsl │ │ │ ├── cross.glsl │ │ │ ├── diamond.glsl │ │ │ ├── disc.glsl │ │ │ ├── ellipse.glsl │ │ │ ├── hbar.glsl │ │ │ ├── heart.glsl │ │ │ ├── infinity.glsl │ │ │ ├── markers.glsl │ │ │ ├── pin.glsl │ │ │ ├── ring.glsl │ │ │ ├── spade.glsl │ │ │ ├── square.glsl │ │ │ ├── tag.glsl │ │ │ ├── triangle.glsl │ │ │ └── vbar.glsl │ │ ├── msdf.frag │ │ ├── msdf.vert │ │ ├── patch.frag │ │ ├── patch.vert │ │ ├── plot.frag │ │ ├── plot.vert │ │ ├── plot_agg.frag │ │ ├── plot_agg.vert │ │ ├── polygon.frag │ │ ├── polygon.vert │ │ ├── scatter.frag │ │ ├── scatter.vert │ │ ├── simple.frag │ │ ├── simple.vert │ │ ├── text.frag │ │ ├── text.vert │ │ ├── uni_plot.frag │ │ ├── uni_plot.vert │ │ ├── uni_scatter.frag │ │ ├── uni_scatter.vert │ │ └── utils.glsl │ ├── interact.py │ ├── panzoom.py │ ├── plot.py │ ├── static │ │ └── SourceCodePro-Regular.npy.gz │ ├── tests │ │ ├── __init__.py │ │ ├── conftest.py │ │ ├── test_axes.py │ │ ├── test_base.py │ │ ├── test_interact.py │ │ ├── test_panzoom.py │ │ ├── test_plot.py │ │ ├── test_transform.py │ │ ├── test_utils.py │ │ └── test_visuals.py │ ├── transform.py │ ├── utils.py │ └── visuals.py └── utils │ ├── __init__.py │ ├── color.py │ ├── config.py │ ├── context.py │ ├── plugin.py │ ├── profiling.py │ └── tests │ ├── __init__.py │ ├── conftest.py │ ├── test_color.py │ ├── test_config.py │ ├── test_context.py │ ├── test_plugin.py │ └── test_profiling.py ├── plugins ├── README.md ├── action_status_bar.py ├── cluster_metadata.py ├── cluster_metrics.py ├── cluster_stats.py ├── cluster_view_styling.py ├── color_scheme.py ├── custom_button.py ├── custom_columns.py ├── custom_similarity.py ├── custom_split.py ├── feature_view_custom_grid.py ├── filter_action.py ├── font_size.py ├── hello.py ├── ipython_view.py ├── matplotlib_view.py ├── n_spikes_views.py ├── opengl_view.py ├── raw_data_filter.py └── umap_view.py ├── requirements-dev.txt ├── requirements.txt ├── setup.cfg ├── setup.py └── tools ├── api.py ├── extract_shortcuts.py ├── makefont.py ├── plugins_doc.py └── release.py /.github/workflows/codespell.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cortex-lab/phy/HEAD/.github/workflows/codespell.yml -------------------------------------------------------------------------------- /.github/workflows/python-test.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cortex-lab/phy/HEAD/.github/workflows/python-test.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cortex-lab/phy/HEAD/.gitignore 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