├── DESCRIPTION ├── MD5 ├── NAMESPACE ├── NEWS.md ├── R ├── MA_effectsTable.R ├── PDF_download.R ├── PDF_extractImages.R ├── PDF_utils.R ├── PDFs_collect.R ├── abstract_screener.R ├── browse_DOI.R ├── chachi.R ├── covariance_commonControl.R ├── effort_distribute.R ├── effort_initialize.R ├── effort_merge.R ├── effort_redistribute.R ├── effort_summary.R ├── effort_utils.R ├── figure_add.R ├── figure_barPlot.R ├── figure_detectAllPoints.R ├── figure_detectAxis.R ├── figure_display.R ├── figure_displayDetectedPoints.R ├── figure_displayDetections.R ├── figure_extractDetectedPoints.R ├── figure_extractXAxis.R ├── figure_manual_extraction.R ├── figure_read.R ├── figure_removeOutlyingPoints.R ├── figure_scatterPlot.R ├── figure_split.R ├── figure_transformByColors.R ├── figure_transformToBinary.R ├── figure_utils.R ├── figure_write.R ├── impute_SD.R ├── impute_missingness.R ├── impute_utils.R ├── isPDF.R ├── metagear.R ├── metagear_data.R ├── metagear_utils.R ├── plot_PRISMA.R ├── plot_PRISMA_utils.R ├── random_N.R ├── random_OR.R ├── random_RR.R ├── random_d.R ├── random_missingness.R ├── random_pairedN.R ├── random_r.R ├── random_utils.R ├── replicate_MetaWin2.0.R ├── replicate_phyloMeta1.3.R ├── scrape_bibliography.R ├── scrape_utils.R └── zzz.R ├── README.md ├── data └── example_references_metagear.rda ├── inst ├── CITATION ├── doc │ ├── metagear_basic_vignette_v0.7.pdf │ └── metagear_basic_vignette_v0.7.pdf.asis └── images │ ├── Kam_et_al_2003_Fig2.jpg │ └── Kortum_and_Acymyan_2013_Fig4.jpg ├── man ├── Kam_et_al_2003_Fig2.jpg.Rd ├── Kortum_and_Acymyan_2013_Fig4.jpg.Rd ├── MA_effectsTable.Rd ├── PDF_download.Rd ├── PDF_extractImages.Rd ├── PDFs_collect.Rd ├── abstract_screener.Rd ├── browse_DOI.Rd ├── chachi.Rd ├── covariance_commonControl.Rd ├── effort_distribute.Rd ├── effort_initialize.Rd ├── effort_merge.Rd ├── effort_redistribute.Rd ├── effort_summary.Rd ├── example_references_metagear.Rd ├── figure_add.Rd ├── figure_barPlot.Rd ├── figure_detectAllPoints.Rd ├── figure_detectAxis.Rd ├── figure_display.Rd ├── figure_displayDetectedPoints.Rd ├── figure_displayDetections.Rd ├── figure_extractDetectedPoints.Rd ├── figure_read.Rd ├── figure_removeOutlyingPoints.Rd ├── figure_scatterPlot.Rd ├── figure_splitPlot.Rd ├── figure_transformByColors.Rd ├── figure_transformToBinary.Rd ├── figure_write.Rd ├── impute_SD.Rd ├── impute_missingness.Rd ├── isPDF.Rd ├── metagear-package.Rd ├── plot_PRISMA.Rd ├── random_N.Rd ├── random_OR.Rd ├── random_RR.Rd ├── random_d.Rd ├── random_missingness.Rd ├── random_pairedN.Rd ├── random_r.Rd ├── replicate_MetaWin2.0.Rd ├── replicate_phyloMeta1.3.Rd └── scrape_bibliography.Rd ├── tests ├── testthat.R └── testthat │ ├── test-datasets.R │ ├── test-effort_distribute.R │ ├── test-effort_initialize.R │ ├── test-effort_merge.R │ ├── test-effort_redistribute.R │ ├── test-random_N.R │ ├── test-random_OR.R │ ├── test-random_RR.R │ ├── test-random_d.R │ ├── test-random_pairedN.R │ └── test-random_r.R 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