├── GEO_rulegraph.png ├── LICENSE ├── README.md ├── SRR.txt ├── Snakefile ├── TCGA.png ├── TCGA_barcode.jpg ├── bsub_cluster.py ├── cluster.json ├── config.yaml ├── jobscript.sh ├── meta.txt ├── pyflow-ChIPseq.sh ├── pyflow-drmaa-ChIPseq.sh ├── rulegraph.png ├── sample2json.py ├── samples.json └── scripts └── sraDownload.R /GEO_rulegraph.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/GEO_rulegraph.png -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/README.md -------------------------------------------------------------------------------- /SRR.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/SRR.txt -------------------------------------------------------------------------------- /Snakefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/Snakefile -------------------------------------------------------------------------------- /TCGA.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/TCGA.png -------------------------------------------------------------------------------- /TCGA_barcode.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/TCGA_barcode.jpg -------------------------------------------------------------------------------- /bsub_cluster.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/bsub_cluster.py -------------------------------------------------------------------------------- /cluster.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/cluster.json -------------------------------------------------------------------------------- /config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/config.yaml -------------------------------------------------------------------------------- /jobscript.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/jobscript.sh -------------------------------------------------------------------------------- /meta.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/meta.txt -------------------------------------------------------------------------------- /pyflow-ChIPseq.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/pyflow-ChIPseq.sh -------------------------------------------------------------------------------- /pyflow-drmaa-ChIPseq.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/pyflow-drmaa-ChIPseq.sh -------------------------------------------------------------------------------- /rulegraph.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/rulegraph.png -------------------------------------------------------------------------------- /sample2json.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/sample2json.py -------------------------------------------------------------------------------- /samples.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/samples.json -------------------------------------------------------------------------------- /scripts/sraDownload.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/crazyhottommy/pyflow-ChIPseq/HEAD/scripts/sraDownload.R --------------------------------------------------------------------------------