├── .gitignore
└── README.md


/.gitignore:
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1 | temp_download_ucsc_hg19_fasta/
2 | *.fasta
3 | 


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/README.md:
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 1 | # Build ucsc.hg19.fasta
 2 | 
 3 | The script downloads sequences of chromosomes 1-22, X and Y from UCSC [1] and combines them in order.
 4 | 
 5 | [1] ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes
 6 | 
 7 | ## How to run
 8 | 
 9 | ```
10 | cd ucsc-hg19-fasta
11 | ./build.sh ucsc.hg19.fasta
12 | ```
13 | 
14 | Once the final FASTA file is produced, all intermediate files and directory are removed. Because the scripts creates temporary files, please run it in a freshly created directory (or ucsc-hg19-fasta).
15 | 


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