├── .editorconfig ├── .gitattributes ├── .github └── workflows │ └── python-package.yml ├── .gitignore ├── .gitmodules ├── .pre-commit-config.yaml ├── CHANGELOG.md ├── CONTRIBUTING.md ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.md ├── cryosparc ├── __init__.py ├── api.py ├── api.pyi ├── auth.py ├── cli.py ├── constants.py ├── controllers │ ├── __init__.py │ ├── job.py │ ├── project.py │ └── workspace.py ├── dataset │ ├── __init__.py │ ├── column.py │ ├── core.pyi │ ├── core.pyx │ ├── dataset.c │ ├── dataset.pxd │ ├── dtype.py │ ├── lz4.pxd │ └── row.py ├── errors.py ├── include │ └── cryosparc-tools │ │ └── dataset.h ├── json_util.py ├── model_registry.py ├── models │ ├── __init__.py │ ├── api_request.py │ ├── api_response.py │ ├── asset.py │ ├── auth.py │ ├── benchmarks.py │ ├── config.py │ ├── diagnostics.py │ ├── event.py │ ├── exposure.py │ ├── external.py │ ├── file_browser.py │ ├── gpu.py │ ├── instance.py │ ├── job.py │ ├── job_register.py │ ├── job_spec.py │ ├── license.py │ ├── notification.py │ ├── params.py │ ├── preview.py │ ├── project.py │ ├── resource.py │ ├── scheduler_lane.py │ ├── scheduler_target.py │ ├── service.py │ ├── services.py │ ├── session.py │ ├── session_config_profile.py │ ├── session_params.py │ ├── session_spec.py │ ├── signature.py │ ├── tag.py │ ├── user.py │ ├── when.py │ └── workspace.py ├── mrc.py ├── platform.py ├── registry.py ├── search.py ├── spec.py ├── star.py ├── stream.py ├── stream_registry.py ├── tools.py └── util.py ├── docs ├── _config.yml ├── _static │ ├── cryosparc-tools-architecture.png │ └── custom.css ├── _templates │ └── api-module.rst ├── _toc.yml ├── api.rst ├── examples │ ├── 3dflex-custom-latent-trajectory.ipynb │ ├── 3dflex-custom-mesh-rigidity-weights.ipynb │ ├── attachments │ │ ├── custom-trajectory.png │ │ ├── upscale-particles_result.png │ │ └── upscale-particles_workflow.png │ ├── connect_series_to_class3D.ipynb │ ├── cryolo.ipynb │ ├── custom-workflow.ipynb │ ├── delete-rejected-exposures.ipynb │ ├── hi-res-2d-classes.ipynb │ ├── magnification.ipynb │ ├── recenter-particles.ipynb │ ├── upscale-expanded-particles.ipynb │ └── xml-exposure-groups.ipynb ├── favicon.png ├── guides │ ├── cli.md │ └── jobs.ipynb ├── intro.md ├── logo.png ├── references.bib └── requirements.txt ├── pyproject.toml ├── setup.py ├── tests ├── __init__.py ├── conftest.py ├── controllers │ ├── __init__.py │ ├── test_job.py │ └── test_project.py ├── data │ ├── 4k_dataset.cs │ └── job096_run_data.star ├── test.c ├── test.sh ├── test_api.py ├── test_cli.py ├── test_dataset.py ├── test_dataset_bench.py ├── test_star.py └── test_tools.py └── vercel.json /.editorconfig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/.editorconfig -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/.gitattributes -------------------------------------------------------------------------------- /.github/workflows/python-package.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/.github/workflows/python-package.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/.gitmodules -------------------------------------------------------------------------------- /.pre-commit-config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/.pre-commit-config.yaml -------------------------------------------------------------------------------- /CHANGELOG.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/CHANGELOG.md -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/README.md -------------------------------------------------------------------------------- /cryosparc/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/__init__.py -------------------------------------------------------------------------------- /cryosparc/api.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/api.py -------------------------------------------------------------------------------- /cryosparc/api.pyi: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/api.pyi -------------------------------------------------------------------------------- /cryosparc/auth.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/auth.py -------------------------------------------------------------------------------- /cryosparc/cli.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/cli.py -------------------------------------------------------------------------------- /cryosparc/constants.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/constants.py -------------------------------------------------------------------------------- /cryosparc/controllers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/controllers/__init__.py -------------------------------------------------------------------------------- /cryosparc/controllers/job.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/controllers/job.py -------------------------------------------------------------------------------- /cryosparc/controllers/project.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/controllers/project.py -------------------------------------------------------------------------------- /cryosparc/controllers/workspace.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/controllers/workspace.py -------------------------------------------------------------------------------- /cryosparc/dataset/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/dataset/__init__.py -------------------------------------------------------------------------------- /cryosparc/dataset/column.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/dataset/column.py -------------------------------------------------------------------------------- /cryosparc/dataset/core.pyi: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/dataset/core.pyi -------------------------------------------------------------------------------- /cryosparc/dataset/core.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/dataset/core.pyx -------------------------------------------------------------------------------- /cryosparc/dataset/dataset.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/dataset/dataset.c -------------------------------------------------------------------------------- /cryosparc/dataset/dataset.pxd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/dataset/dataset.pxd -------------------------------------------------------------------------------- /cryosparc/dataset/dtype.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/dataset/dtype.py -------------------------------------------------------------------------------- /cryosparc/dataset/lz4.pxd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/dataset/lz4.pxd -------------------------------------------------------------------------------- /cryosparc/dataset/row.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/dataset/row.py -------------------------------------------------------------------------------- /cryosparc/errors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/errors.py -------------------------------------------------------------------------------- /cryosparc/include/cryosparc-tools/dataset.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/include/cryosparc-tools/dataset.h -------------------------------------------------------------------------------- /cryosparc/json_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/json_util.py -------------------------------------------------------------------------------- /cryosparc/model_registry.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/model_registry.py -------------------------------------------------------------------------------- /cryosparc/models/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /cryosparc/models/api_request.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/api_request.py -------------------------------------------------------------------------------- /cryosparc/models/api_response.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/api_response.py -------------------------------------------------------------------------------- /cryosparc/models/asset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/asset.py -------------------------------------------------------------------------------- /cryosparc/models/auth.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/auth.py -------------------------------------------------------------------------------- /cryosparc/models/benchmarks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/benchmarks.py -------------------------------------------------------------------------------- /cryosparc/models/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/config.py -------------------------------------------------------------------------------- /cryosparc/models/diagnostics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/diagnostics.py -------------------------------------------------------------------------------- /cryosparc/models/event.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/event.py -------------------------------------------------------------------------------- /cryosparc/models/exposure.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/exposure.py -------------------------------------------------------------------------------- /cryosparc/models/external.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/external.py -------------------------------------------------------------------------------- /cryosparc/models/file_browser.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/file_browser.py -------------------------------------------------------------------------------- /cryosparc/models/gpu.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/gpu.py -------------------------------------------------------------------------------- /cryosparc/models/instance.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/instance.py -------------------------------------------------------------------------------- /cryosparc/models/job.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/job.py -------------------------------------------------------------------------------- /cryosparc/models/job_register.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/job_register.py -------------------------------------------------------------------------------- /cryosparc/models/job_spec.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/job_spec.py -------------------------------------------------------------------------------- /cryosparc/models/license.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/license.py -------------------------------------------------------------------------------- /cryosparc/models/notification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/notification.py -------------------------------------------------------------------------------- /cryosparc/models/params.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/params.py -------------------------------------------------------------------------------- /cryosparc/models/preview.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/preview.py -------------------------------------------------------------------------------- /cryosparc/models/project.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/project.py -------------------------------------------------------------------------------- /cryosparc/models/resource.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/resource.py -------------------------------------------------------------------------------- /cryosparc/models/scheduler_lane.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/scheduler_lane.py -------------------------------------------------------------------------------- /cryosparc/models/scheduler_target.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/scheduler_target.py -------------------------------------------------------------------------------- /cryosparc/models/service.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/service.py -------------------------------------------------------------------------------- /cryosparc/models/services.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/services.py -------------------------------------------------------------------------------- /cryosparc/models/session.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/session.py -------------------------------------------------------------------------------- /cryosparc/models/session_config_profile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/session_config_profile.py -------------------------------------------------------------------------------- /cryosparc/models/session_params.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/session_params.py -------------------------------------------------------------------------------- /cryosparc/models/session_spec.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/session_spec.py -------------------------------------------------------------------------------- /cryosparc/models/signature.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/signature.py -------------------------------------------------------------------------------- /cryosparc/models/tag.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/tag.py -------------------------------------------------------------------------------- /cryosparc/models/user.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/user.py -------------------------------------------------------------------------------- /cryosparc/models/when.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/when.py -------------------------------------------------------------------------------- /cryosparc/models/workspace.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/models/workspace.py -------------------------------------------------------------------------------- /cryosparc/mrc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/mrc.py -------------------------------------------------------------------------------- /cryosparc/platform.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/platform.py -------------------------------------------------------------------------------- /cryosparc/registry.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/registry.py -------------------------------------------------------------------------------- /cryosparc/search.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/search.py -------------------------------------------------------------------------------- /cryosparc/spec.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/spec.py -------------------------------------------------------------------------------- /cryosparc/star.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/star.py -------------------------------------------------------------------------------- /cryosparc/stream.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/stream.py -------------------------------------------------------------------------------- /cryosparc/stream_registry.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/stream_registry.py -------------------------------------------------------------------------------- /cryosparc/tools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/tools.py -------------------------------------------------------------------------------- /cryosparc/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/cryosparc/util.py -------------------------------------------------------------------------------- /docs/_config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/_config.yml -------------------------------------------------------------------------------- /docs/_static/cryosparc-tools-architecture.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/_static/cryosparc-tools-architecture.png -------------------------------------------------------------------------------- /docs/_static/custom.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/_static/custom.css -------------------------------------------------------------------------------- /docs/_templates/api-module.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/_templates/api-module.rst -------------------------------------------------------------------------------- /docs/_toc.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/_toc.yml -------------------------------------------------------------------------------- /docs/api.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/api.rst -------------------------------------------------------------------------------- /docs/examples/3dflex-custom-latent-trajectory.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/3dflex-custom-latent-trajectory.ipynb -------------------------------------------------------------------------------- /docs/examples/3dflex-custom-mesh-rigidity-weights.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/3dflex-custom-mesh-rigidity-weights.ipynb -------------------------------------------------------------------------------- /docs/examples/attachments/custom-trajectory.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/attachments/custom-trajectory.png -------------------------------------------------------------------------------- /docs/examples/attachments/upscale-particles_result.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/attachments/upscale-particles_result.png -------------------------------------------------------------------------------- /docs/examples/attachments/upscale-particles_workflow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/attachments/upscale-particles_workflow.png -------------------------------------------------------------------------------- /docs/examples/connect_series_to_class3D.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/connect_series_to_class3D.ipynb -------------------------------------------------------------------------------- /docs/examples/cryolo.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/cryolo.ipynb -------------------------------------------------------------------------------- /docs/examples/custom-workflow.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/custom-workflow.ipynb -------------------------------------------------------------------------------- /docs/examples/delete-rejected-exposures.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/delete-rejected-exposures.ipynb -------------------------------------------------------------------------------- /docs/examples/hi-res-2d-classes.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/hi-res-2d-classes.ipynb -------------------------------------------------------------------------------- /docs/examples/magnification.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/magnification.ipynb -------------------------------------------------------------------------------- /docs/examples/recenter-particles.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/recenter-particles.ipynb -------------------------------------------------------------------------------- /docs/examples/upscale-expanded-particles.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/upscale-expanded-particles.ipynb -------------------------------------------------------------------------------- /docs/examples/xml-exposure-groups.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/examples/xml-exposure-groups.ipynb -------------------------------------------------------------------------------- /docs/favicon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/favicon.png -------------------------------------------------------------------------------- /docs/guides/cli.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/guides/cli.md -------------------------------------------------------------------------------- /docs/guides/jobs.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/guides/jobs.ipynb -------------------------------------------------------------------------------- /docs/intro.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/intro.md -------------------------------------------------------------------------------- /docs/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/logo.png -------------------------------------------------------------------------------- /docs/references.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/docs/references.bib -------------------------------------------------------------------------------- /docs/requirements.txt: -------------------------------------------------------------------------------- 1 | jupyter-book<2.0 2 | matplotlib 3 | numpy 4 | -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/pyproject.toml -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/setup.py -------------------------------------------------------------------------------- /tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/conftest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/conftest.py -------------------------------------------------------------------------------- /tests/controllers/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/controllers/test_job.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/controllers/test_job.py -------------------------------------------------------------------------------- /tests/controllers/test_project.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/controllers/test_project.py -------------------------------------------------------------------------------- /tests/data/4k_dataset.cs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/data/4k_dataset.cs -------------------------------------------------------------------------------- /tests/data/job096_run_data.star: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/data/job096_run_data.star -------------------------------------------------------------------------------- /tests/test.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/test.c -------------------------------------------------------------------------------- /tests/test.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/test.sh -------------------------------------------------------------------------------- /tests/test_api.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/test_api.py -------------------------------------------------------------------------------- /tests/test_cli.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/test_cli.py -------------------------------------------------------------------------------- /tests/test_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/test_dataset.py -------------------------------------------------------------------------------- /tests/test_dataset_bench.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/test_dataset_bench.py -------------------------------------------------------------------------------- /tests/test_star.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/test_star.py -------------------------------------------------------------------------------- /tests/test_tools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/tests/test_tools.py -------------------------------------------------------------------------------- /vercel.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cryoem-uoft/cryosparc-tools/HEAD/vercel.json --------------------------------------------------------------------------------