├── README.md ├── Spatial-MGCN ├── DLPFC_denoising.py ├── DLPFC_generate_data.py ├── DLPFC_test.py ├── HBC_generate_data.py ├── HBC_test.py ├── MOB_generate_data.py ├── MOB_test.py ├── __init__.py ├── __pycache__ │ ├── BRC_integration_model.cpython-38.pyc │ ├── BRC_integration_utils.cpython-38.pyc │ ├── config.cpython-38.pyc │ ├── dataprocess.cpython-38.pyc │ ├── layers.cpython-38.pyc │ ├── models.cpython-38.pyc │ └── utils.cpython-38.pyc ├── config.py ├── config │ ├── DLPFC.ini │ ├── Human_Breast_Cancer.ini │ └── Mouse_Olfactory.ini ├── layers.py ├── models.py ├── result │ ├── DLPFC │ │ ├── 151507 │ │ │ ├── Denoise │ │ │ │ ├── ATP2B4_mean.jpg │ │ │ │ ├── ATP2B4_raw.jpg │ │ │ │ ├── B3GALT2_mean.jpg │ │ │ │ ├── B3GALT2_raw.jpg │ │ │ │ ├── CRYM_mean.jpg │ │ │ │ ├── CRYM_raw.jpg │ │ │ │ ├── FKBP1A_mean.jpg │ │ │ │ ├── FKBP1A_raw.jpg │ │ │ │ ├── NEFH_mean.jpg │ │ │ │ ├── NEFH_raw.jpg │ │ │ │ ├── RXFP1_mean.jpg │ │ │ │ ├── RXFP1_raw.jpg │ │ │ │ ├── stacked_violin_Raw.jpg │ │ │ │ └── stacked_violin_Spatial_MGCN.jpg │ │ │ ├── Manual Annotation.jpg │ │ │ ├── Spatial_MGCN.jpg │ │ │ ├── Spatial_MGCN_emb.csv │ │ │ ├── Spatial_MGCN_idx.csv │ │ │ └── Spatial_MGCN_umap_mean.jpg │ │ ├── 151508 │ │ │ ├── Manual Annotation.jpg │ │ │ ├── Spatial_MGCN.jpg │ │ │ └── Spatial_MGCN_idx.csv │ │ ├── 151509 │ │ │ ├── Manual Annotation.jpg │ │ │ ├── Spatial_MGCN.jpg │ │ │ └── Spatial_MGCN_idx.csv │ │ ├── 151510 │ │ │ ├── Manual Annotation.jpg │ │ │ ├── Spatial_MGCN.jpg │ │ │ └── Spatial_MGCN_idx.csv │ │ ├── 151669 │ │ │ ├── Manual Annotation.jpg │ │ │ ├── Spatial_MGCN.jpg │ │ │ └── Spatial_MGCN_idx.csv │ │ ├── 151670 │ │ │ ├── Manual Annotation.jpg │ │ │ ├── Spatial_MGCN.jpg │ │ │ └── Spatial_MGCN_idx.csv │ │ ├── 151671 │ │ │ ├── Manual Annotation.jpg │ │ │ ├── Spatial_MGCN.jpg │ │ │ └── Spatial_MGCN_idx.csv │ │ ├── 151672 │ │ │ ├── Manual Annotation.jpg │ │ │ ├── Spatial_MGCN.jpg │ │ │ └── Spatial_MGCN_idx.csv │ │ ├── 151673 │ │ │ ├── Manual Annotation.jpg │ │ │ ├── Spatial_MGCN.jpg │ │ │ └── Spatial_MGCN_idx.csv │ │ ├── 151674 │ │ │ ├── Manual Annotation.jpg │ │ │ ├── Spatial_MGCN.jpg │ │ │ └── Spatial_MGCN_idx.csv │ │ ├── 151675 │ │ │ ├── Manual Annotation.jpg │ │ │ ├── Spatial_MGCN.jpg │ │ │ └── Spatial_MGCN_idx.csv │ │ └── 151676 │ │ │ ├── Manual Annotation.jpg │ │ │ ├── Spatial_MGCN.jpg │ │ │ └── Spatial_MGCN_idx.csv │ ├── Human_Breast_Cancer │ │ ├── Human_Breast_Cancer.jpg │ │ ├── Spatial_MGCN.jpg │ │ └── Spatial_MGCN_idx.csv │ ├── Mouse_Olfactory │ │ ├── Raw │ │ │ ├── Apod.jpg │ │ │ ├── Cck.jpg │ │ │ ├── Gabra1.jpg │ │ │ ├── Mbp.jpg │ │ │ ├── Nrgn.jpg │ │ │ ├── Pcp4.jpg │ │ │ └── Slc6a11.jpg │ │ ├── Spatial_MGCN.png │ │ ├── Spatial_MGCN_idx.csv │ │ └── align │ │ │ ├── EPL.png │ │ │ ├── GCL.png │ │ │ ├── GL.png │ │ │ ├── IPL.png │ │ │ ├── MCL.png │ │ │ ├── ONL.png │ │ │ └── RMS.png │ └── Spatial-MGCN.png └── utils.py ├── data ├── DLPFC │ └── 151507 │ │ ├── filtered_feature_bc_matrix.h5 │ │ ├── metadata.tsv │ │ └── spatial │ │ ├── scalefactors_json.json │ │ ├── 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