├── .circleci ├── Dockerfile ├── config.yml └── main.bat ├── .clang-format ├── .gitignore ├── .style.yapf ├── CONTRIBUTING.md ├── Dockerfile ├── LICENSE ├── README.md ├── README.py ├── deploy ├── .gitignore ├── CMakeLists.txt ├── Makefile ├── README.md ├── amgx_no_comm_report.patch ├── install_setenv ├── scripts │ ├── aconf │ ├── aphros │ │ ├── __init__.py │ │ ├── confgen.py │ │ ├── io.py │ │ ├── par.py │ │ ├── plot.py │ │ ├── stat.py │ │ ├── stream.py │ │ ├── test.py │ │ └── vtk.py │ ├── applycopyright │ ├── argmax │ ├── argmaxall │ ├── base │ ├── cawk │ ├── conf │ ├── confdeb │ ├── copyright │ ├── deriv │ ├── diff │ ├── diffnum │ ├── downsample │ ├── downsampleall │ ├── findsource │ ├── format │ ├── genxmf │ ├── genxmfall │ ├── getcol │ ├── gettraj │ ├── gettrajcol │ ├── gettrajm │ ├── gettrajsh │ ├── getval │ ├── gitsnap │ ├── hausdorff │ ├── hist │ ├── histbin │ ├── intcol │ ├── job │ ├── job0 │ ├── kedr │ ├── kill │ ├── line │ ├── makearg │ ├── makesim │ ├── merge_hdf_xmf │ ├── merge_hdf_xmf_all │ ├── merge_raw_xmf │ ├── merge_raw_xmf_all │ ├── mpirun │ ├── order │ ├── paratools │ │ ├── __init__.py │ │ └── paratools.py │ ├── part │ ├── part0 │ ├── plain2vtk │ ├── plottools │ │ ├── __init__.py │ │ └── plottools.py │ ├── pngmp4 │ ├── profiles │ │ ├── daint │ │ │ ├── kill │ │ │ └── mpirun │ │ ├── euler │ │ │ ├── kill │ │ │ └── mpirun │ │ └── mac │ │ │ └── mpirun │ ├── py2conf │ ├── run │ ├── run0 │ ├── scale │ ├── sim_a.conf │ ├── sim_base.conf │ ├── sim_base.makefile │ ├── spawn │ ├── split_hdf_xmf_all │ ├── split_raw_xmf_all │ ├── statcopy │ ├── submit0 │ ├── sysinfo │ ├── task │ ├── trajaxes │ ├── vtkcolorall │ └── writearg └── scripts_gen │ ├── create_a_conf │ ├── create_base_conf │ ├── profiles │ ├── barry │ │ └── setenv_inc │ ├── daint │ │ ├── setenv_inc │ │ └── submit_inc │ ├── euler │ │ ├── setenv_inc │ │ └── submit_inc │ ├── falcon │ │ └── setenv_inc │ └── mac │ │ └── .dummy │ ├── setenv │ └── submit ├── doc ├── bench │ ├── b00-base │ ├── b01-uniform │ ├── b02-cd1c1840-neigh │ ├── b03-1865a238-lite │ ├── b04-9f02c513-nf │ ├── b05-247a35a1-cnc │ ├── b06-af02f636-index │ ├── b07-1d7e1865-cnf │ ├── b08-e21cd8a0-fnc │ ├── b09-41835701-fnn │ ├── b10-9f8b9a0b-cnn │ ├── b11-e1b5e70e-vol │ ├── b12-d3984379-cleanup │ ├── b13-a64bd53c-convdiffi │ ├── b14-75804430-convdiffvi │ ├── b15-3f78c8d8-simple │ ├── b16-86659e19-field │ ├── b17-a99add77-tmp │ └── b18-f2b49e64-move ├── codeocean │ ├── .gitignore │ ├── README.md │ ├── code │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── README.md │ │ ├── bidisperse.sh │ │ ├── bin │ │ │ ├── mpirun │ │ │ └── pvbatch │ │ ├── build.sh │ │ ├── clustering.sh │ │ ├── crystal.sh │ │ ├── run │ │ ├── test.sh │ │ └── waterfall.sh │ └── environment │ │ └── Dockerfile ├── dashboard │ ├── .gitignore │ ├── data.js │ ├── gen_data.py │ ├── index.html │ ├── main.css │ └── main.js └── sphinx │ ├── .gitignore │ ├── Makefile │ ├── bootstrap │ ├── findpath.py │ ├── img_pdf.mk │ ├── includecode.py │ ├── linkpath.py │ ├── requirements.txt │ ├── src │ ├── bclist.rst │ ├── comm.rst │ ├── conf.py │ ├── convdiff.rst │ ├── embed.rst │ ├── fluid.rst │ ├── index.rst │ ├── intro.rst │ ├── lib1 │ │ ├── ap-cawk.rst │ │ ├── ap-format.rst │ │ ├── ap-hist.rst │ │ └── index.rst │ ├── lib3 │ │ ├── index.rst │ │ └── vof.rst │ ├── log │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── index.rst │ │ ├── log.rst │ │ ├── log01_grad_ka │ │ │ ├── grad_ka.mp4 │ │ │ ├── k_grad_a.mp4 │ │ │ ├── k_grad_a_kmean.mp4 │ │ │ └── out │ │ ├── log02_dn │ │ │ ├── dn0.mp4 │ │ │ ├── dn1.mp4 │ │ │ └── out │ │ ├── log03_native │ │ │ ├── out_native │ │ │ └── out_std │ │ ├── log04_maxit │ │ │ ├── kedr.pdf │ │ │ └── traj.pdf │ │ ├── log05_coalnp │ │ │ ├── gen1_ns3_np5 │ │ │ ├── nx064_ns2_np9.png │ │ │ ├── nx064_ns3_np5.png │ │ │ ├── nx064_ns3_np9.png │ │ │ └── nx128_ns2_np9.png │ │ ├── log06_coaliter │ │ │ ├── a.gnu │ │ │ ├── nx256iter1 │ │ │ │ ├── ch │ │ │ │ │ ├── a.mp4 │ │ │ │ │ └── neck │ │ │ │ └── gen1 │ │ │ ├── nx256iter10 │ │ │ │ ├── ch │ │ │ │ │ ├── a.mp4 │ │ │ │ │ └── neck │ │ │ │ └── gen1 │ │ │ ├── nx512iter1 │ │ │ │ ├── ch │ │ │ │ │ ├── a.mp4 │ │ │ │ │ └── neck │ │ │ │ └── gen1 │ │ │ ├── nx512iter10 │ │ │ │ ├── ch │ │ │ │ │ ├── a.mp4 │ │ │ │ │ └── neck │ │ │ │ └── gen1 │ │ │ └── rn.pdf │ │ ├── log07_vrelax │ │ │ ├── v08p08 │ │ │ │ ├── gen1 │ │ │ │ ├── out │ │ │ │ ├── stat.dat │ │ │ │ └── wforce │ │ │ └── v09p1 │ │ │ │ ├── gen1 │ │ │ │ ├── out │ │ │ │ ├── stat.dat │ │ │ │ └── wforce │ │ ├── log08_getcenter │ │ │ ├── tg │ │ │ │ ├── Makefile │ │ │ │ ├── add.conf │ │ │ │ ├── b890.dat │ │ │ │ └── std.conf │ │ │ ├── tg0_37304aee0 │ │ │ │ └── trep_0001.log │ │ │ └── tg1_5a4e4ce17 │ │ │ │ └── trep_0001.log │ │ ├── log09_debug_linear │ │ │ ├── min │ │ │ │ ├── Makefile │ │ │ │ ├── add.conf │ │ │ │ ├── r │ │ │ │ └── std.conf │ │ │ ├── patch │ │ │ ├── r │ │ │ ├── simple_bad.ipp │ │ │ └── simple_good.ipp │ │ ├── log10_vtkmerge │ │ │ ├── .gitignore │ │ │ ├── Makefile │ │ │ ├── hash_collision │ │ │ │ ├── Makefile │ │ │ │ └── std.conf │ │ │ ├── rank.py │ │ │ ├── std.conf │ │ │ └── vtkmerge.svg │ │ └── log11_explviscous │ │ │ └── explviscous.png │ ├── main.bib │ ├── output.rst │ ├── primlist.rst │ ├── references.rst │ ├── styleguide.rst │ ├── theme │ │ ├── layout.html │ │ ├── page.html │ │ ├── static │ │ │ └── basic.css │ │ └── theme.conf │ └── vofm.rst │ └── test │ └── incldecode.py ├── examples ├── .gitignore ├── 000_march │ ├── CMakeLists.txt │ ├── main.c │ └── run ├── 001_march_cell │ ├── .gitignore │ ├── CMakeLists.txt │ ├── cell.obj │ ├── main.c │ └── run ├── 002_march_sphere │ ├── .gitignore │ ├── CMakeLists.txt │ ├── main.c │ └── run ├── 003_h5_serial_write │ ├── .gitignore │ ├── CMakeLists.txt │ ├── main.c │ └── run ├── 004_h5_mpi_write │ ├── .gitignore │ ├── CMakeLists.txt │ ├── main.c │ └── run ├── 005_h5_read_xmf │ ├── CMakeLists.txt │ ├── main.c │ ├── run │ └── u.xmf ├── 006_cmake │ ├── .gitignore │ ├── CMakeLists.txt │ ├── main.cpp │ └── run ├── 100_advection │ ├── CMakeLists.txt │ ├── main.cpp │ └── run ├── 101_partstr │ ├── .gitignore │ ├── CMakeLists.txt │ ├── main.cpp │ └── run ├── 102_mean_curv_flow │ ├── .gitignore │ ├── CMakeLists.txt │ ├── clean │ ├── gen │ ├── main.cpp │ ├── ref │ │ ├── .gitignore │ │ ├── 0_wget │ │ ├── 1_crop │ │ ├── 2_detect.py │ │ ├── README.md │ │ ├── a0.png │ │ ├── a0edge.png │ │ ├── a1.png │ │ ├── a2.png │ │ ├── cl.dat │ │ ├── cl.pdf │ │ ├── colors0 │ │ ├── colors1 │ │ ├── points2colors │ │ └── voronoi │ │ │ ├── _voronoi │ │ │ ├── cl.dat │ │ │ ├── cl.png │ │ │ ├── online │ │ │ ├── README.md │ │ │ ├── glUtils.js │ │ │ ├── header.js │ │ │ ├── pm.png │ │ │ ├── points0 │ │ │ ├── points1 │ │ │ ├── robots.txt │ │ │ ├── sites0 │ │ │ ├── sites1 │ │ │ ├── sites2points │ │ │ ├── sylvester.js │ │ │ ├── tutorial.js │ │ │ ├── voronoi.html │ │ │ └── wget │ │ │ ├── points1.dat │ │ │ ├── points1.png │ │ │ └── voronoi.py │ ├── run_mullins │ ├── sim │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── std.conf │ │ ├── vis │ │ │ ├── run │ │ │ └── slice.py │ │ └── vispy │ │ │ ├── .gitignore │ │ │ ├── _plot │ │ │ ├── plot.py │ │ │ ├── points1 │ │ │ ├── sm_0000.pdf │ │ │ ├── sm_0300.pdf │ │ │ └── src │ │ │ │ ├── main.cpp │ │ │ │ └── run │ │ │ ├── readvtk.py │ │ │ └── rs │ ├── std.conf │ ├── tools │ │ ├── calc_rate │ │ ├── dist_all │ │ ├── dist_all_sides │ │ ├── hausdorff_all │ │ ├── paraview.py │ │ ├── print_error │ │ ├── print_error_all │ │ └── rate.gnu │ └── vis │ │ └── contour.py ├── 103_embed_advection │ ├── .gitignore │ ├── CMakeLists.txt │ ├── case0 │ │ ├── u_0000.svg │ │ └── u_0001.svg │ ├── case1 │ │ └── u_0001.svg │ ├── case2 │ │ └── u_0001.svg │ ├── clean │ ├── main.cpp │ ├── plot │ └── run ├── 104_embed_diffusion │ ├── .gitignore │ ├── CMakeLists.txt │ ├── case0_gradlim0 │ │ ├── u_0000.svg │ │ └── u_0001.svg │ ├── case1_gradlim0 │ │ └── u_0001.svg │ ├── case2_gradlim0 │ │ └── u_0001.svg │ ├── clean │ ├── main.cpp │ ├── plot │ └── run ├── 105_sharp │ ├── .gitignore │ ├── CMakeLists.txt │ ├── Makefile_legacy │ ├── README.md │ ├── data │ │ ├── i.jpeg │ │ └── text │ │ │ ├── .gitignore │ │ │ ├── Makefile │ │ │ └── main.tex │ ├── main.cpp │ └── tools │ │ ├── brain │ │ ├── ellipse │ │ ├── img2raw │ │ ├── raw2img │ │ └── sharp ├── 106_diffusion_4d │ ├── .gitignore │ ├── CMakeLists.txt │ ├── a.conf │ ├── main.cpp │ └── run ├── 107_wasm │ ├── .gitignore │ ├── CMakeLists.txt │ ├── Makefile │ ├── Makefile_legacy │ ├── README.md │ ├── aphros.cpp │ ├── aphros.html │ ├── aphros_defs.js │ ├── aphros_doc.css │ ├── aphros_doc.md │ ├── assets │ │ └── electrochem-icon.svg │ ├── common.h │ ├── conf │ │ └── std.conf │ ├── diffusion.cpp │ ├── diffusion.html │ ├── electrochem-icon.png │ ├── electrochem.cpp │ ├── electrochem.html │ ├── electrochem_defs.js │ ├── hydro-icon.png │ ├── hydro.cpp │ ├── hydro.html │ ├── hydro_defs.js │ ├── libs │ │ └── lz-string.js │ ├── parser.cpp │ ├── parser.html │ └── parser_defs.js ├── 108_labeling │ ├── .gitignore │ ├── CMakeLists.txt │ ├── a.conf │ └── main.cpp ├── 109_particles │ ├── .gitignore │ ├── CMakeLists.txt │ ├── main.cpp │ └── vis │ │ ├── .gitignore │ │ ├── run │ │ └── vis.py ├── 200_primlist │ ├── .gitignore │ ├── Makefile │ ├── a_orig.jpg │ ├── b.dat │ ├── case │ │ ├── polygon │ │ └── ruled │ ├── plot.py │ └── std.conf ├── 201_taylor_couette │ ├── .gitignore │ ├── Makefile │ ├── README.md │ ├── bc.dat │ ├── body.dat │ ├── hook │ │ ├── CMakeLists.txt │ │ ├── Makefile │ │ └── hook.cpp │ ├── ref │ │ ├── convergence │ │ │ ├── error.svg │ │ │ ├── error_032 │ │ │ ├── error_064 │ │ │ ├── error_128 │ │ │ └── error_256 │ │ └── single │ │ │ ├── error_064 │ │ │ ├── field.svg │ │ │ └── theta_error_0001.h5 │ ├── std.conf │ └── test ├── 202_coalescence │ ├── .gitignore │ ├── 2d │ │ ├── Makefile │ │ └── std.conf │ ├── Makefile │ ├── standalone │ │ ├── .gitignore │ │ ├── conf │ │ └── mesh.conf │ ├── std.conf │ └── vis │ │ └── rt.py ├── 203_hydrostatic │ ├── .gitignore │ ├── Makefile │ ├── multi.conf │ ├── ref │ │ ├── multi │ │ │ ├── density.svg │ │ │ ├── density_init.svg │ │ │ ├── history.svg │ │ │ ├── pressure.svg │ │ │ ├── statsel │ │ │ └── velocity.svg │ │ └── single │ │ │ ├── pressure.svg │ │ │ └── velocity.svg │ ├── std.conf │ └── test ├── 204_microfoam │ ├── .gitignore │ ├── Makefile │ ├── gen │ ├── par.py │ └── std.conf ├── 205_multivof │ ├── .gitignore │ ├── README.md │ ├── bidisperse │ │ ├── Makefile │ │ ├── cases │ │ │ └── small │ │ │ │ └── par.py │ │ ├── gen │ │ ├── std.conf │ │ └── vis │ │ │ ├── vis.py │ │ │ └── visrt.py │ ├── buoyancy_breakup │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── gen │ │ ├── render_varyrho.sh │ │ ├── run_all │ │ ├── run_all_varyrho │ │ ├── std.conf │ │ ├── tools │ │ │ ├── dist_all │ │ │ ├── hausdorff_all │ │ │ ├── link_all_varyrho │ │ │ └── plot_all_varyrho │ │ └── vis │ │ │ └── contour.py │ ├── clustering │ │ ├── Makefile │ │ ├── b.dat │ │ ├── bspawn.dat │ │ ├── cases │ │ │ └── small │ │ │ │ └── add.conf │ │ ├── std.conf │ │ └── vis │ │ │ └── viswhite.py │ ├── crystal │ │ ├── Makefile │ │ ├── README.md │ │ ├── cases │ │ │ ├── hex1 │ │ │ │ └── par.py │ │ │ ├── hex2 │ │ │ │ └── par.py │ │ │ ├── hex3 │ │ │ │ └── par.py │ │ │ ├── hex4 │ │ │ │ └── par.py │ │ │ ├── oscillator │ │ │ │ └── par.py │ │ │ └── small │ │ │ │ └── par.py │ │ ├── gen │ │ ├── std.conf │ │ └── vis │ │ │ └── vis.py │ ├── junction │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── cases │ │ │ ├── sharpen0 │ │ │ │ └── add.conf │ │ │ └── sharpen1 │ │ │ │ └── add.conf │ │ ├── gen │ │ ├── hook │ │ │ ├── .gitignore │ │ │ ├── CMakeLists.txt │ │ │ ├── Makefile │ │ │ └── hook.cpp │ │ ├── run_all │ │ ├── std.conf │ │ ├── tools │ │ │ ├── dist_all │ │ │ └── hausdorff_all │ │ └── vis │ │ │ └── contour.py │ ├── sharpening_circle │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── run_smooth │ │ ├── run_stepwise │ │ ├── std.conf │ │ ├── stepwise.conf │ │ └── vis │ │ │ ├── plot_volume_error.py │ │ │ └── vis_vf.py │ └── waterfall │ │ ├── Makefile │ │ ├── cases │ │ └── small │ │ │ └── par.py │ │ ├── gen │ │ ├── std.conf │ │ └── vis │ │ └── viswhite.py ├── 206_gallery │ └── tesla │ │ ├── .gitignore │ │ ├── tesla.py │ │ └── tesla_template.conf ├── 207_cylinder │ ├── .gitignore │ ├── Makefile │ ├── gen │ ├── ref │ │ ├── README.md │ │ ├── dragx_ba │ │ ├── dragx_k95 │ │ ├── surfvort_ba │ │ └── surfvort_k95 │ ├── std.conf │ └── vis │ │ ├── dragx.py │ │ ├── omm2d.py │ │ ├── omm3d.py │ │ ├── run │ │ └── stream.py ├── 208_rising │ ├── .gitignore │ ├── Makefile │ ├── README.md │ ├── plot.py │ ├── ref │ │ └── c1g3l4s.txt │ ├── run_all │ └── std.conf ├── 209_curvature │ ├── .gitignore │ ├── Makefile │ ├── plot.py │ ├── run │ └── std.conf ├── 210_step_hook │ ├── .gitignore │ ├── Makefile │ ├── README.md │ ├── hook │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── Makefile │ │ └── hook.cpp │ └── std.conf ├── 211_lammps │ ├── .gitignore │ ├── Makefile │ ├── README.md │ ├── hook │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── Makefile │ │ └── hook.cpp │ ├── in.lj │ └── std.conf ├── 212_polymers │ ├── Makefile │ ├── README.md │ ├── dump2vtk │ ├── gen │ ├── hook │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── Makefile │ │ └── hook.cpp │ ├── in.polymers │ ├── input │ ├── std.conf │ └── vis │ │ ├── run │ │ └── vis.py ├── 213_electrochem │ ├── epstein │ │ ├── Makefile │ │ ├── gen │ │ ├── std.conf │ │ └── vis │ │ │ ├── colorbar.py │ │ │ ├── plot │ │ │ ├── run_plot │ │ │ ├── run_slice │ │ │ └── slice.py │ ├── reactor │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── gen │ │ ├── std.conf │ │ ├── units.py │ │ └── vis │ │ │ ├── plot │ │ │ ├── slice.py │ │ │ └── view.py │ └── ring_electrode │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── gen │ │ ├── ref │ │ ├── penas2019_fig3.pdf │ │ ├── penas2019_fig3_I05.csv │ │ ├── penas2019_fig3_I10.csv │ │ └── penas2019_fig3_I20.csv │ │ ├── std.conf │ │ ├── units.py │ │ └── vis │ │ ├── colorbar.py │ │ ├── plot │ │ ├── run_elpot │ │ ├── run_plot │ │ ├── run_tu0 │ │ ├── slice.py │ │ └── slice_top.py ├── 214_aps │ ├── .gitignore │ └── wave │ │ ├── Makefile │ │ ├── pargen │ │ └── std.conf ├── Makefile └── README.md ├── make ├── .gitignore ├── 0amgx.mk ├── 0avx.mk ├── 0backend_cubism.mk ├── 0hdf.0mpi.mk ├── 0hdf.1mpi.mk ├── 0hypre.mk ├── 0opencl.mk ├── 1amgx.mk ├── 1avx.mk ├── 1backend_cubism.mk ├── 1hdf.0mpi.mk ├── 1hdf.1mpi.mk ├── 1hypre.mk ├── 1opencl.mk ├── bin ├── bootstrap ├── dep ├── list ├── minus ├── obj ├── skip ├── var └── windows │ ├── explorer.inc │ └── gitgen.cpp ├── src ├── .gitignore ├── CMakeLists.txt ├── CubismNoCopy │ ├── .gitignore │ ├── BlockInfo.h │ ├── BlockLab.h │ ├── BlockLabMPI.h │ ├── DependencyCubeMPI.h │ ├── Grid.h │ ├── GridMPI.h │ ├── HDF5Dumper_MPI.h │ ├── Matrix3D.h │ ├── PUPkernelsMPI.h │ ├── QPXEMU.h │ ├── StencilInfo.h │ └── SynchronizerMPI.h ├── Makefile ├── Makefile_legacy ├── NMakefile ├── aphrosConfig.cmake ├── aphros_c.h ├── aphros_c │ ├── git.cpp │ ├── main.cpp │ └── parser.cpp ├── aphrosjsConfig.cmake ├── client.cmake ├── color │ ├── CMakeLists.txt │ ├── color.c │ └── color.h ├── debug │ ├── cond.h │ ├── isnan.h │ └── linear.h ├── distr │ ├── CMakeLists.txt │ ├── comm_manager.cpp │ ├── comm_manager.h │ ├── comm_manager.ipp │ ├── comm_manager_seq.ipp │ ├── commmap.h │ ├── cubismnc.cpp │ ├── cubismnc.ipp │ ├── distr.cpp │ ├── distr.h │ ├── distr.ipp │ ├── distr_particles.cpp │ ├── distr_particles.h │ ├── distr_particles.ipp │ ├── distrbasic.cpp │ ├── distrbasic.h │ ├── distrsolver.cpp │ ├── distrsolver.h │ ├── local.cpp │ ├── local.ipp │ ├── native.cpp │ ├── native.ipp │ ├── reduce.h │ ├── report.cpp │ └── report.h ├── dump │ ├── CMakeLists.txt │ ├── dump.cpp │ ├── dump.h │ ├── dump.ipp │ ├── dumper.cpp │ ├── dumper.h │ ├── hdf.cpp │ ├── hdf.h │ ├── hdf.ipp │ ├── hdf_nompi.ipp │ ├── output.h │ ├── output_paraview.h │ ├── raw.cpp │ ├── raw.h │ ├── raw.ipp │ ├── vtk.cpp │ ├── vtk.h │ ├── vtk.ipp │ ├── xmf.cpp │ ├── xmf.h │ └── xmf.ipp ├── explorer.cpp ├── explorer_gen ├── func │ ├── CMakeLists.txt │ ├── init.cpp │ ├── init.h │ ├── init.ipp │ ├── init_bc.h │ ├── init_cl.h │ ├── init_contang.cpp │ ├── init_contang.h │ ├── init_sig.h │ ├── init_u.h │ ├── init_vel.cpp │ ├── init_vel.h │ ├── primlist.cpp │ ├── primlist.h │ └── primlist.ipp ├── gen │ ├── interp.py │ ├── linear.mac │ ├── normal.py │ ├── particles_stokes.py │ ├── smooth.py │ ├── wave_lamb.c │ ├── wave_lamb.mac │ └── wave_lamb.py ├── geom │ ├── CMakeLists.txt │ ├── block.h │ ├── blockface.h │ ├── blockfaced.h │ ├── dir.h │ ├── field.h │ ├── filter.h │ ├── idx.h │ ├── loop.h │ ├── map.h │ ├── mesh.cpp │ ├── mesh.h │ ├── mesh.ipp │ ├── notation.h │ ├── range.h │ ├── rangein.h │ ├── rangemulti.h │ ├── transform.h │ ├── unique.h │ └── vect.h ├── gitrev ├── header ├── header.cmake ├── inside │ ├── CMakeLists.txt │ ├── bbox.inc │ ├── err.inc │ ├── inside.h │ ├── main.c │ ├── memory.h │ ├── memory.inc │ ├── off.inc │ ├── ply.inc │ ├── predicate.h │ ├── predicate.inc │ ├── predicate_c.inc │ └── stl.inc ├── kernel │ ├── CMakeLists.txt │ ├── hydro.cpp │ ├── hydro.h │ ├── hydro.ipp │ ├── hydro_snippets.h │ ├── kernelmesh.h │ └── kernelmeshpar.h ├── linear │ ├── .gitignore │ ├── CMakeLists.txt │ ├── amgx.h │ ├── conjugate_cl.cl │ ├── conjugate_cl.cpp │ ├── conjugate_cl.h │ ├── conjugate_cl.ipp │ ├── hypre.cpp │ ├── hypre.h │ ├── hypresub.cpp │ ├── hypresub.h │ ├── kernel.gen │ ├── linear.cpp │ ├── linear.h │ ├── linear.ipp │ ├── linear_amgx.cpp │ ├── linear_amgx.h │ ├── linear_hypre.cpp │ └── linear_hypre.h ├── main.c ├── march │ ├── CMakeLists.txt │ ├── main.c │ ├── march.h │ └── table.inc ├── opencl │ ├── .gitignore │ ├── CMakeLists.txt │ ├── kernels.cl │ ├── kernels.gen │ ├── opencl.cpp │ ├── opencl.h │ └── opencl.ipp ├── overlap │ ├── CMakeLists.txt │ ├── overlap.cpp │ ├── overlap.h │ └── overlap.inc ├── parse │ ├── CMakeLists.txt │ ├── argparse.cpp │ ├── argparse.h │ ├── codeblocks.cpp │ ├── codeblocks.h │ ├── conf2py.cpp │ ├── config.h │ ├── curv.h │ ├── eval.cpp │ ├── evalexpr.cpp │ ├── evalexpr.h │ ├── parser.cpp │ ├── parser.h │ ├── proj.h │ ├── simple.h │ ├── solver.h │ ├── template.cpp │ ├── template.h │ ├── util.h │ ├── vars.cpp │ ├── vars.h │ └── vof.h ├── solver │ ├── CMakeLists.txt │ ├── advection.h │ ├── approx.cpp │ ├── approx.h │ ├── approx.ipp │ ├── approx2.h │ ├── approx_eb.cpp │ ├── approx_eb.h │ ├── approx_eb.ipp │ ├── cond.h │ ├── convdiff.h │ ├── convdiffe.cpp │ ├── convdiffe.h │ ├── convdiffe.ipp │ ├── convdiffi.cpp │ ├── convdiffi.h │ ├── convdiffi.ipp │ ├── convdiffv.h │ ├── convdiffvg.cpp │ ├── convdiffvg.h │ ├── convdiffvg.ipp │ ├── curv.cpp │ ├── curv.h │ ├── curv.ipp │ ├── electro.cpp │ ├── electro.h │ ├── electro.ipp │ ├── embed.cpp │ ├── embed.h │ ├── embed.ipp │ ├── fluid.h │ ├── fluid_dummy.cpp │ ├── fluid_dummy.h │ ├── fluid_dummy.ipp │ ├── multi.h │ ├── normal.cpp │ ├── normal.h │ ├── normal.ipp │ ├── particles.cpp │ ├── particles.h │ ├── particles.ipp │ ├── partstr.h │ ├── partstrmeshm.cpp │ ├── partstrmeshm.h │ ├── partstrmeshm.ipp │ ├── pois.h │ ├── proj.cpp │ ├── proj.h │ ├── proj.ipp │ ├── proj_eb.cpp │ ├── reconst.h │ ├── simple.cpp │ ├── simple.h │ ├── simple.ipp │ ├── solver.cpp │ ├── solver.h │ ├── sphavg.h │ ├── tracer.cpp │ ├── tracer.h │ ├── tracer.ipp │ ├── tracker.h │ ├── trackerm.h │ ├── vof.cpp │ ├── vof.h │ ├── vof.ipp │ ├── vofm.cpp │ ├── vofm.h │ └── vofm.ipp ├── test │ ├── .gitignore │ ├── CMakeLists.txt │ ├── Makefile │ ├── README.md │ ├── advection │ │ ├── .gitignore │ │ ├── 2d.conf │ │ ├── 3d.conf │ │ ├── CMakeLists.txt │ │ ├── README.md │ │ ├── cmp.h │ │ ├── gerris │ │ │ ├── .gitignore │ │ │ ├── README.md │ │ │ ├── convert │ │ │ ├── main.gfs │ │ │ ├── run │ │ │ └── vtk.py │ │ ├── main.cpp │ │ ├── openmp.conf │ │ ├── plot.py │ │ ├── ref │ │ │ ├── 2d │ │ │ │ ├── a_0001.dat │ │ │ │ ├── k_0001.dat │ │ │ │ ├── nx_0001.dat │ │ │ │ ├── ny_0001.dat │ │ │ │ ├── nz_0001.dat │ │ │ │ └── u_0001.dat │ │ │ └── 3d │ │ │ │ ├── u_0000.dat │ │ │ │ └── u_0002.dat │ │ ├── refopenmp │ │ │ ├── k_0001.dat │ │ │ ├── nx_0001.dat │ │ │ └── u_0001.dat │ │ ├── runopenmp │ │ ├── std.conf │ │ └── test │ ├── approx │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── linear.cpp │ │ ├── main.cpp │ │ ├── ref │ │ │ ├── linear │ │ │ │ └── out │ │ │ └── main │ │ │ │ └── out │ │ └── test │ ├── bc │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── _inlet.conf │ │ ├── _inletflux.conf │ │ ├── _periodic.conf │ │ ├── _proj.conf │ │ ├── _slipwall.conf │ │ ├── _surfsymm.conf │ │ ├── _surfwall.conf │ │ ├── _wall.conf │ │ ├── ref │ │ │ ├── inlet │ │ │ │ └── p_0000.vts │ │ │ ├── inlet_proj │ │ │ │ └── p_0000.vts │ │ │ ├── inletflux │ │ │ │ └── p_0000.vts │ │ │ ├── inletflux_proj │ │ │ │ └── p_0000.vts │ │ │ ├── periodic │ │ │ │ └── s_0000.vtk │ │ │ ├── periodic_proj │ │ │ │ └── s_0000.vtk │ │ │ ├── slipwall │ │ │ │ └── p_0000.vts │ │ │ ├── slipwall_proj │ │ │ │ └── p_0000.vts │ │ │ ├── surfsymm │ │ │ │ └── s_0000.vtk │ │ │ ├── surfsymm_proj │ │ │ │ └── s_0000.vtk │ │ │ ├── surfwall │ │ │ │ └── s_0000.vtk │ │ │ ├── surfwall_proj │ │ │ │ └── s_0000.vtk │ │ │ ├── wall │ │ │ │ └── p_0000.vts │ │ │ └── wall_proj │ │ │ │ └── p_0000.vts │ │ ├── sim.makefile │ │ ├── std.conf │ │ └── test │ ├── bench │ ├── benchmark │ │ ├── CMakeLists.txt │ │ ├── asm │ │ └── main.cpp │ ├── benchmark_diffusion │ │ ├── CMakeLists.txt │ │ └── main.cpp │ ├── benchmark_mpi │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ └── run │ ├── benchmark_mpiraw │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ └── run │ ├── benchmark_normal │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ └── r │ ├── benchmark_partstr │ │ ├── .gitignore │ │ ├── a.pvsm │ │ ├── add.conf │ │ ├── b.dat │ │ ├── clean │ │ ├── run │ │ └── std.conf │ ├── benchmark_tg │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── add.conf │ │ ├── b133.dat │ │ └── std.conf │ ├── cavity │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── acub.conf │ │ ├── add.conf │ │ ├── aloc.conf │ │ ├── clean │ │ ├── plot.py │ │ ├── ref │ │ │ ├── out │ │ │ ├── p_0000.dat │ │ │ ├── p_0000.pdf │ │ │ ├── vf_0000.dat │ │ │ ├── vx_0000.dat │ │ │ ├── vy_0000.dat │ │ │ └── vz_0000.dat │ │ ├── run │ │ ├── std.conf │ │ ├── stream.py │ │ └── update │ ├── color │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── a.out │ │ ├── main.cpp │ │ ├── run │ │ └── sph │ ├── comm │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── a.conf │ │ └── main.cpp │ ├── commhalo │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ └── run │ ├── commmap │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ ├── manager.cpp │ │ ├── rank.cpp │ │ ├── ref │ │ │ ├── main │ │ │ │ └── out │ │ │ ├── manager │ │ │ │ ├── out_0 │ │ │ │ └── out_1 │ │ │ ├── manager_seq │ │ │ │ └── out_0 │ │ │ ├── rank_cubism │ │ │ │ ├── out_0 │ │ │ │ ├── out_1 │ │ │ │ ├── out_2 │ │ │ │ └── out_3 │ │ │ └── rank_native │ │ │ │ ├── out_0 │ │ │ │ ├── out_1 │ │ │ │ ├── out_2 │ │ │ │ └── out_3 │ │ └── test │ ├── condface │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ ├── ref │ │ │ └── out │ │ └── test │ ├── confgen │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── gen │ │ ├── ref │ │ │ └── conf │ │ └── test │ ├── contang │ │ ├── .gitignore │ │ ├── 2d.conf │ │ ├── 3d.conf │ │ ├── CMakeLists.txt │ │ ├── a.gnu │ │ ├── embed_2d.conf │ │ ├── embed_3d.conf │ │ ├── ref │ │ │ ├── 2d │ │ │ │ └── c2x │ │ │ ├── 3d │ │ │ │ └── c2x │ │ │ ├── embed_2d │ │ │ │ └── c2x │ │ │ └── embed_3d │ │ │ │ └── c2x │ │ ├── sim.makefile │ │ ├── std.conf │ │ └── test │ ├── debug │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ ├── ref │ │ │ └── out │ │ ├── strippath │ │ └── test │ ├── dump │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── Makefile_legacy │ │ ├── a.mhd │ │ ├── a.xmf │ │ ├── dump_diff.cpp │ │ ├── dump_gen.cpp │ │ ├── dump_meta.cpp │ │ ├── dump_util.cpp │ │ ├── input.xmf │ │ ├── ref │ │ │ ├── h5 │ │ │ │ └── out │ │ │ ├── meta │ │ │ │ ├── out1.xmf │ │ │ │ ├── out2.xmf │ │ │ │ ├── out3.xmf │ │ │ │ └── out4.xmf │ │ │ ├── raw │ │ │ │ └── out │ │ │ ├── raw_seq │ │ │ │ └── out │ │ │ └── util │ │ │ │ └── out │ │ └── test │ ├── embed │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── _clean │ │ ├── _r │ │ ├── bc.dat │ │ ├── main.cpp │ │ └── np │ ├── embed_approx │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── a.py │ │ ├── main.cpp │ │ ├── sim.makefile │ │ └── std.conf │ ├── embed_convdiff │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── _clean │ │ ├── _r │ │ ├── main.cpp │ │ └── np │ ├── embed_grad │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── _clean │ │ ├── _r │ │ ├── main.cpp │ │ └── np │ ├── embed_interpolate │ │ ├── CMakeLists.txt │ │ └── main.cpp │ ├── embed_potential │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── _r │ │ ├── bc.dat │ │ ├── body.dat │ │ ├── diff │ │ ├── main.cpp │ │ ├── np │ │ └── run_diff │ ├── fluid │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── a.conf │ │ ├── main.cpp │ │ ├── np │ │ └── test │ ├── fluxes │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── a.gnu │ │ ├── b.dat │ │ ├── exp.conf │ │ ├── force.conf │ │ ├── gravity.conf │ │ ├── imp.conf │ │ ├── pressure.conf │ │ ├── proj.conf │ │ ├── ref │ │ │ ├── proj_exp_gravity │ │ │ │ ├── p │ │ │ │ └── vx │ │ │ ├── proj_imp_gravity │ │ │ │ ├── p │ │ │ │ └── vx │ │ │ ├── proj_imp_pressure │ │ │ │ ├── p │ │ │ │ └── vx │ │ │ ├── simple_exp_gravity │ │ │ │ ├── p │ │ │ │ └── vx │ │ │ └── simple_imp_gravity │ │ │ │ ├── p │ │ │ │ └── vx │ │ ├── sim.makefile │ │ ├── simple.conf │ │ ├── std.conf │ │ ├── stokes.conf │ │ ├── test │ │ └── univisc.conf │ ├── grad │ │ ├── CMakeLists.txt │ │ └── main.cpp │ ├── hdf │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── b.dat │ │ ├── bgen │ │ ├── ref │ │ │ ├── vf_0000.h5 │ │ │ └── vf_0000.xmf │ │ ├── run │ │ ├── sim.makefile │ │ ├── std.conf │ │ └── update │ ├── hook │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── hook │ │ │ ├── .gitignore │ │ │ ├── CMakeLists.txt │ │ │ ├── Makefile │ │ │ └── hook.cpp │ │ ├── sim.makefile │ │ └── std.conf │ ├── hypre │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ └── np │ ├── hypresub │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ └── np │ ├── init │ │ ├── CMakeLists.txt │ │ └── main.cpp │ ├── inlet │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── _inlet.conf │ │ ├── b.dat │ │ ├── ref │ │ │ └── rho_0002.dat │ │ ├── sim.makefile │ │ ├── std.conf │ │ └── test │ ├── inner │ │ ├── .gitignore │ │ ├── 0.ref │ │ ├── 1.ref │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ ├── ref │ │ │ ├── 0.out │ │ │ └── 1.out │ │ └── test │ ├── linear │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── amgx.json │ │ ├── amgxpcg.json │ │ ├── b.conf │ │ ├── main.cpp │ │ ├── np │ │ ├── ref │ │ │ ├── bench_daint_2020-01-13 │ │ │ ├── conjugate │ │ │ │ ├── out │ │ │ │ └── outdiff │ │ │ ├── hypre │ │ │ │ ├── out │ │ │ │ └── outdiff │ │ │ └── jacobi │ │ │ │ ├── out │ │ │ │ └── outdiff │ │ ├── run │ │ ├── run_bench │ │ └── test │ ├── mesh │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ ├── ref │ │ │ ├── 2d │ │ │ │ └── out │ │ │ ├── 3d │ │ │ │ └── out │ │ │ └── 4d │ │ │ │ └── out │ │ └── test │ ├── multivof │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── add.conf │ │ ├── b.dat │ │ ├── clean │ │ ├── ref │ │ │ ├── out │ │ │ ├── p_0000.dat │ │ │ ├── vf_0000.dat │ │ │ ├── vx_0000.dat │ │ │ └── vy_0000.dat │ │ ├── sim.makefile │ │ ├── std.conf │ │ └── test │ ├── openmp │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ └── run │ ├── parser │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── a.conf │ │ ├── b.conf │ │ ├── bloat │ │ │ ├── .gitignore │ │ │ ├── Makefile │ │ │ └── gen.sh │ │ ├── codeblocks.cpp │ │ ├── codeblocks_in │ │ ├── main.cpp │ │ ├── ref │ │ │ ├── codeblocks │ │ │ │ └── out │ │ │ └── main │ │ │ │ └── out │ │ ├── subdir │ │ │ ├── c.conf │ │ │ └── d.conf │ │ └── test │ ├── particles │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ ├── ref │ │ │ └── stat.log │ │ └── test │ ├── partstr │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── b.dat │ │ ├── bgen │ │ ├── ref │ │ │ ├── partit.csv │ │ │ └── s_0000.vtk │ │ ├── run │ │ ├── sim.makefile │ │ ├── std.conf │ │ └── update │ ├── primlist │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── getmap.cpp │ │ ├── parse.cpp │ │ ├── ref │ │ │ ├── getmap │ │ │ │ └── out │ │ │ └── parse │ │ │ │ └── out │ │ ├── run_getmap │ │ ├── run_parse │ │ ├── strippath │ │ └── test │ ├── randc │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── ref │ │ │ ├── dim2_overlap1 │ │ │ │ └── ch │ │ │ │ │ ├── b.dat │ │ │ │ │ ├── partit_0000.csv │ │ │ │ │ ├── s_0000.vtk │ │ │ │ │ └── vf_0000.dat │ │ │ └── dim3_overlap1 │ │ │ │ └── ch │ │ │ │ ├── b.dat │ │ │ │ ├── partit_0000.csv │ │ │ │ ├── s_0000.vtk │ │ │ │ └── vf_0000.dat │ │ ├── run │ │ ├── sim │ │ │ ├── _vary │ │ │ ├── bb │ │ │ ├── ch │ │ │ │ ├── .gitignore │ │ │ │ ├── Makefile │ │ │ │ ├── add.conf │ │ │ │ ├── bb │ │ │ │ ├── cleanall │ │ │ │ ├── curv │ │ │ │ ├── getr.py │ │ │ │ ├── partit.filt │ │ │ │ ├── run │ │ │ │ ├── s.py │ │ │ │ └── std.conf │ │ │ └── getr.py │ │ ├── update │ │ └── updateall │ ├── range │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ ├── ref │ │ └── run │ ├── recolor │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── a.conf │ │ ├── b.dat │ │ ├── clean │ │ ├── main.cpp │ │ ├── np │ │ └── tl │ ├── reconst │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── levelset.cpp │ │ ├── levelset_ref │ │ ├── main.cpp │ │ ├── plane.cpp │ │ ├── plot │ │ ├── r │ │ └── run_levelset │ ├── reflect │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── a.out │ │ ├── main.cpp │ │ └── run │ ├── rising │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── add.conf │ │ ├── ref │ │ │ └── sm_0003.vtk │ │ └── test │ ├── sharp │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── acub.conf │ │ ├── acubm.conf │ │ ├── add.conf │ │ ├── b.dat │ │ ├── clean │ │ ├── plot.py │ │ ├── ref │ │ │ ├── out │ │ │ ├── vf_0000.dat │ │ │ └── vf_0000.pdf │ │ ├── run │ │ ├── std.conf │ │ └── update │ ├── stat │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── a.conf │ │ ├── main.cpp │ │ ├── np │ │ ├── ref │ │ │ ├── out │ │ │ └── stat.dat │ │ └── test │ ├── subcomm │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ └── main.cpp │ ├── surftens │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── b.dat │ │ ├── plot.py │ │ ├── ref │ │ │ ├── out │ │ │ ├── p_0000.dat │ │ │ ├── partit_0000.csv │ │ │ ├── vf_0000.dat │ │ │ ├── vf_0000.pdf │ │ │ ├── vx_0000.dat │ │ │ ├── vy_0000.dat │ │ │ └── vz_0000.dat │ │ ├── std.conf │ │ └── test │ ├── suspender │ │ ├── CMakeLists.txt │ │ ├── context.h │ │ ├── loop.h │ │ ├── main.cpp │ │ ├── other.h │ │ └── simple.h │ ├── sysinfo │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── Makefile_legacy │ │ ├── main.cpp │ │ ├── realpath.cpp │ │ ├── ref │ │ │ └── out │ │ ├── splitext.cpp │ │ └── test │ ├── testbase │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── ref │ │ │ ├── case0 │ │ │ │ ├── 0.dat │ │ │ │ └── 1.dat │ │ │ └── case1 │ │ │ │ ├── 0.dat │ │ │ │ └── 1.dat │ │ └── test │ ├── tracker │ │ ├── CMakeLists.txt │ │ └── main.cpp │ ├── trackersim │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── _grad.conf │ │ ├── _gravity.conf │ │ ├── _uniform.conf │ │ ├── _zero.conf │ │ ├── a.gnu │ │ ├── b.dat │ │ ├── ref │ │ │ ├── grad │ │ │ │ ├── traj_0000.csv │ │ │ │ └── trajsh_0000.csv │ │ │ ├── gravity │ │ │ │ ├── traj_0000.csv │ │ │ │ ├── traj_0001.csv │ │ │ │ ├── traj_0002.csv │ │ │ │ ├── traj_0003.csv │ │ │ │ ├── traj_0004.csv │ │ │ │ ├── trajsh_0000.csv │ │ │ │ ├── trajsh_0001.csv │ │ │ │ ├── trajsh_0002.csv │ │ │ │ ├── trajsh_0003.csv │ │ │ │ └── trajsh_0004.csv │ │ │ ├── uniform │ │ │ │ ├── traj_0000.csv │ │ │ │ ├── traj_0001.csv │ │ │ │ ├── traj_0002.csv │ │ │ │ ├── traj_0003.csv │ │ │ │ ├── traj_0004.csv │ │ │ │ ├── trajsh_0000.csv │ │ │ │ ├── trajsh_0001.csv │ │ │ │ ├── trajsh_0002.csv │ │ │ │ ├── trajsh_0003.csv │ │ │ │ └── trajsh_0004.csv │ │ │ └── zero │ │ │ │ ├── traj_0000.csv │ │ │ │ ├── traj_0001.csv │ │ │ │ ├── traj_0002.csv │ │ │ │ ├── traj_0003.csv │ │ │ │ ├── traj_0004.csv │ │ │ │ ├── trajsh_0000.csv │ │ │ │ ├── trajsh_0001.csv │ │ │ │ ├── trajsh_0002.csv │ │ │ │ ├── trajsh_0003.csv │ │ │ │ └── trajsh_0004.csv │ │ ├── sim.makefile │ │ ├── std.conf │ │ └── test │ ├── util │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ ├── ref │ │ │ └── out │ │ └── test │ ├── vars │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ ├── ref │ │ │ └── out │ │ └── test │ ├── visual │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── main.cpp │ │ ├── test │ │ └── vislist │ └── vort │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── add.conf │ │ ├── b.dat │ │ ├── ref │ │ ├── omm_0001.dat │ │ └── vf_0001.dat │ │ ├── run │ │ ├── sim.makefile │ │ ├── std.conf │ │ └── update ├── util │ ├── .gitignore │ ├── CMakeLists.txt │ ├── avx.h │ ├── compressor.h │ ├── convdiff.cpp │ ├── convdiff.h │ ├── distr.cpp │ ├── distr.h │ ├── distr.ipp │ ├── events.cpp │ ├── events.h │ ├── filesystem.cpp │ ├── filesystem.h │ ├── fixed_allocator.cpp │ ├── fixed_allocator.h │ ├── fluid.cpp │ ├── fluid.h │ ├── fluid.ipp │ ├── format.cpp │ ├── format.h │ ├── git.cpp │ ├── git.h │ ├── height.h │ ├── histogram.cpp │ ├── histogram.h │ ├── hydro.cpp │ ├── hydro.h │ ├── hydro.ipp │ ├── hydro_post.cpp │ ├── hydro_post.h │ ├── hydro_post.ipp │ ├── linear.cpp │ ├── linear.h │ ├── linear.ipp │ ├── logger.cpp │ ├── logger.h │ ├── macros.h │ ├── metrics.h │ ├── module.h │ ├── mpi.cpp │ ├── mpi.h │ ├── posthook.h │ ├── posthook_default.cpp │ ├── stat.h │ ├── subcomm.cpp │ ├── subcomm.h │ ├── subcomm_dummy.cpp │ ├── suspender.cpp │ ├── suspender.h │ ├── sysinfo.cpp │ ├── sysinfo.h │ ├── system.c │ ├── system.h │ ├── system_unix.inc │ ├── system_windows.inc │ ├── timer.cpp │ ├── timer.h │ ├── visual.cpp │ ├── visual.h │ ├── visual.ipp │ ├── vof.cpp │ ├── vof.h │ └── vof.ipp ├── vars.cmake.in └── young │ ├── CMakeLists.txt │ ├── main.c │ └── young.h └── tools └── release /.circleci/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cselab/aphros/HEAD/.circleci/Dockerfile -------------------------------------------------------------------------------- /.circleci/config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cselab/aphros/HEAD/.circleci/config.yml 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