├── .gitignore ├── .gitmodules ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.md ├── docs ├── Makefile ├── make.bat └── source │ ├── conf.py │ ├── index.rst │ ├── matlab.rst │ ├── python.rst │ └── wiki.md ├── examples ├── example1.html ├── example1.ipynb ├── example2.html ├── example2.ipynb ├── example3_BIDS.ipynb ├── example5_average_single_trial_betas_t_stat.ipynb ├── example6_interpolate_tseries.ipynb ├── example7_makepredictedtimeseries.ipynb ├── example8_nifti_save.ipynb └── example9_noiseceiling.ipynb ├── glmsingle ├── __init__.py ├── check_inputs.py ├── cod │ ├── __init__.py │ ├── calc_cod.py │ └── r2_nom_denom.py ├── defaults.py ├── design │ ├── __init__.py │ ├── construct_stim_matrices.py │ ├── convolve_design.py │ └── make_design_matrix.py ├── glmsingle.py ├── gmm │ ├── __init__.py │ └── findtailthreshold.py ├── hrf │ ├── __init__.py │ ├── getcanonicalhrflibrary.tsv │ ├── gethrf.py │ └── normalisemax.py ├── ols │ ├── __init__.py │ ├── cross_validate.py │ ├── fit_model.py │ ├── fit_runs.py │ ├── glm_estimatemodel.py │ ├── glm_predictresponses.py │ ├── make_poly_matrix.py │ ├── mtimes_stack.py │ ├── olsmatrix.py │ ├── olsmatrix2.py │ ├── optimise_hrf.py │ └── whiten_data.py ├── ssq │ ├── __init__.py │ └── calcbadness.py └── utils │ ├── __init__.py │ ├── alt_round.py │ ├── block_diag.py │ ├── calcdmetric.py │ ├── choose.py │ ├── chunking.py │ ├── cmaplookup.py │ ├── cmapsign4.py │ ├── cmapturbo.py │ ├── colors.py │ ├── get_poly_matrix.py │ ├── h5_utils.py │ ├── isrowvector.py │ ├── linspacefixeddiff.py │ ├── make_image_stack.py │ ├── normalizerange.py │ ├── picksubset.py │ ├── resamplingindices.py │ ├── reshape2D.py │ ├── robustrange.py │ ├── select_noise_regressors.py │ ├── splitmatrix.py │ ├── squish.py │ └── zerodiv.py ├── matlab ├── GLMestimatesingletrial.m ├── examples │ ├── .gitignore │ ├── download_data.m │ ├── example1.m │ ├── example1preview │ │ ├── example1.html │ │ ├── example1.png │ │ ├── example1_01.png │ │ ├── example1_02.png │ │ ├── example1_03.png │ │ └── example1_04.png │ ├── example2.m │ ├── example2preview │ │ ├── example2.html │ │ ├── example2.png │ │ ├── example2_01.png │ │ ├── example2_02.png │ │ ├── example2_03.png │ │ ├── example2_04.png │ │ ├── example2_05.png │ │ └── example2_06.png │ ├── example3_BIDS.m │ ├── example4_SPM.m │ ├── example5_average_single_trial_betas_t_stat.m │ ├── example6_interpolate_tseries.m │ ├── example7_makepredictedtimeseries.m │ ├── example8_nifti_save.m │ └── example9_noiseceiling.m └── utilities │ ├── GLMestimatemodel.m │ ├── GLMpredictresponses.m │ ├── absolutepath.m │ ├── axissquarify.m │ ├── calccod.m │ ├── calccodcell.m │ ├── calccorrelation.m │ ├── calccpfov1D.m │ ├── calczscore.m │ ├── catcell.m │ ├── cell2str.m │ ├── choose.m │ ├── chunking.m │ ├── cmaplookup.m │ ├── cmapsign.m │ ├── cmapsign2.m │ ├── cmapsign4.m │ ├── cmapturbo.m │ ├── constructbutterfilter1D.m │ ├── constructpolynomialmatrix.m │ ├── constructstimulusmatrices.m │ ├── copymatrix.m │ ├── deconvolvevectors.m │ ├── errorbar2.m │ ├── figureprep.m │ ├── figurewrite.m │ ├── filterout.m │ ├── findtailthreshold.m │ ├── flatten.m │ ├── fouriertospace1D.m │ ├── getcanonicalhrf.m │ ├── getcanonicalhrflibrary.m │ ├── getcanonicalhrflibrary.tsv │ ├── getfigurepos.m │ ├── imageactual.m │ ├── isint.m │ ├── isrowvector.m │ ├── linspacecircular.m │ ├── linspacefixeddiff.m │ ├── makeimagestack.m │ ├── matchfiles.m │ ├── matrixindex.m │ ├── mkdirquiet.m │ ├── mod2.m │ ├── mtimescell.m │ ├── nanreplace.m │ ├── normalizemax.m │ ├── normalizerange.m │ ├── olsmatrix.m │ ├── olsmatrix2.m │ ├── permutedim.m │ ├── picksubset.m │ ├── placematrix.m │ ├── printnice.m │ ├── processmulti1D.m │ ├── projectionmatrix.m │ ├── resamplingindices.m │ ├── reshape2D.m │ ├── reshape2D_undo.m │ ├── rmdirquiet.m │ ├── robustrange.m │ ├── scattersparse.m │ ├── setfigurepos.m │ ├── setrandstate.m │ ├── signedarraypower.m │ ├── sizefull.m │ ├── splitmatrix.m │ 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