├── README ├── colormap ├── cmapang.m ├── cmapangLR.m ├── cmapangLVF.m ├── cmapangRVF.m ├── cmapcividis.m ├── cmapdistinct.m ├── cmaphue.m ├── cmaplookup.m ├── cmapnoahvar.m ├── cmapsign.m ├── cmapsign2.m ├── cmapsign3.m ├── cmapsign4.m ├── cmapsinglecolor.m ├── cmaptab10.m ├── cmapturbo.m ├── colorinterpolate.m ├── drawcolorbar.m └── drawcolorbarcircular.m ├── external └── hist2d.m ├── figure ├── addlogticks.m ├── axissquarify.m ├── errorbar2.m ├── errorbar3.m ├── figureprep.m ├── figurewrite.m ├── getcolorchar.m ├── getfigurepos.m ├── hist1dimage.m ├── histrobust.m ├── imageactual.m ├── imagescmulti.m ├── plotorientedbar.m ├── plotrectangle.m ├── printnice.m ├── scatterb.m ├── scatterimagesparse.m ├── scatterline.m ├── scattersparse.m ├── setaxispos.m ├── setfigurepos.m ├── squarify.m ├── straightline.m └── subplotresize.m ├── graphic ├── calcdistpointline.m ├── circlewithin.m ├── coordangle.m ├── coordpolygon.m ├── createrescalingmatrix.m ├── defineellipse3d.m ├── drawarrow.m ├── drawbar.m ├── drawbars.m ├── drawbartexture.m ├── drawcheckerboard.m ├── drawcheckerboards.m ├── drawclosedcontour.m ├── drawclosedcontours.m ├── drawdartboard.m ├── drawellipse.m ├── drawmultiscale.m ├── drawpolargrid.m ├── drawrectangle.m ├── drawsector.m ├── drawtext.m ├── drawtexts.m ├── renderfigure.m ├── xyzrotate_x.m ├── xyzrotate_y.m ├── xyzrotate_z.m ├── xyzrotatetoz.m ├── xyzscale.m └── xyztranslate.m ├── imageprocessing ├── applymultiscalegaborfilters.m ├── applymultiscalegaussianfilters.m ├── calcamplitudespectrum.m ├── calccpfov.m ├── calccpfov1D.m ├── calccpfov3D.m ├── calcimagecoordinates.m ├── calcpositiondifferentfov.m ├── calcunitcoordinates.m ├── changevolumeres.m ├── checkimagesize.m ├── chtoim.m ├── concatimages.m ├── constructbutterfilter.m ├── constructbutterfilter3D.m ├── constructcosinefilter.m ├── constructorientationfilter.m ├── constructsmoothingfilter.m ├── constructwhiteningfilter.m ├── detectedges.m ├── evaldog2d.m ├── evalgabor2d.m ├── evalgrating2d.m ├── evalorientedgaussian2d.m ├── evalrbf2d.m ├── extractwindow.m ├── fftshift2.m ├── fitgabor2d.m ├── fitorientedgaussian2d.m ├── fitrbf2d.m ├── flattenspectra.m ├── fouriertospace.m ├── gabortransform.m ├── generatepinknoise.m ├── generatepinknoise1D.m ├── generaterandomphase.m ├── generatewinnermap.m ├── getsamplebrain.m ├── getsampleimage.m ├── getsampleimage1.png ├── getsampleimage2.png ├── ifftshift2.m ├── imagefilter.m ├── imagefilter3D.m ├── imagesearch.m ├── imagesequenceconcatenate.m ├── imagesequencetomovie.m ├── imaveragefiles.m ├── imcropfiles.m ├── imreadmulti.m ├── imrectimagecrop.m ├── imrectsquare.m ├── imresizedifferentfov.m ├── imresizememory.m ├── imtoch.m ├── imwritemulti.m ├── makecircleimage.m ├── makecolorimagestack.m ├── makeconcentricgrating2d.m ├── makedog2d.m ├── makegabor2d.m ├── makegaussian2d.m ├── makegaussian3d.m ├── makegrating2d.m ├── makegratings2d.m ├── makeimagestack.m ├── makeimagestack3dfiles.m ├── makeimagestack_wrapper.m ├── makeorientedgaussian2d.m ├── makesquareimage.m ├── maskmultiscalegaborfilters.m ├── phasescrambleimage.m ├── placeimageintosquare.m ├── processimages.m ├── processmulti.m ├── scrambleimage.m ├── smoothvolumes.m ├── socmodel.m ├── splitimages.m ├── unitlengthfft2.m ├── varycontrast.m ├── viewimage.m ├── viewimages.m ├── viewmovie.m ├── visualizemultiscalegaborfilters.m └── visualizemultiscalegaborfilters2.m ├── indexing ├── calcposition.m ├── chunking.m ├── firstel.m ├── firstelc.m ├── indexall.m ├── lastel.m ├── linspacecircular.m ├── linspacefixeddiff.m ├── linspacepixels.m ├── matrixindex.m ├── permutedim.m ├── picksubset.m ├── removerepeats.m ├── resamplingindices.m ├── slicematrix.m ├── subscript.m └── vectorsplit.m ├── io ├── absolutepath.m ├── clearexcept.m ├── getextension.m ├── loadbinary.m ├── loadexcept.m ├── loadmaybe.m ├── loadmulti.m ├── loadmulti2.m ├── loadtext.m ├── matchfiles.m ├── multifile.m ├── niiload.m ├── raw2dload.m ├── savebinary.m ├── saveexcept.m ├── savetext.m ├── shuffletext.m ├── stripext.m └── stripfile.m ├── math ├── addnoise.m ├── allzero.m ├── ang2complex.m ├── calccod.m ├── calccodcell.m ├── calccorrelation.m ├── calcmdse.m ├── calcmdsepct.m ├── calcsparseness.m ├── calczscore.m ├── chunkfun.m ├── chunknormalize.m ├── circularavg.m ├── circulardiff.m ├── circularshiftandsum.m ├── clipoutliers.m ├── constructpathonsphere.m ├── countinstances.m ├── distributewithconstraints.m ├── divnorm.m ├── l1unitlength.m ├── l1vectorlength.m ├── matchgain.m ├── meanandse.m ├── meancell.m ├── mod2.m ├── mod4.m ├── mtimescell.m ├── nanreplace.m ├── nanreplace2.m ├── nantoclosest.m ├── negrect.m ├── negreplace.m ├── normalizemax.m ├── normalizerange.m ├── posnegrect.m ├── posrect.m ├── quickqr.m ├── restrictrange.m ├── robustrange.m ├── signedarraypower.m ├── signforce.m ├── stdquartile.m ├── unitlength.m ├── unitlengthfast.m ├── vectorlength.m ├── zerodiv.m └── zeromean.m ├── matrix ├── addvectors.m ├── blob.m ├── catcell.m ├── catmatrix.m ├── cellfunfirst.m ├── cropvalidvolume.m ├── equalizematrixdimensions.m ├── fillmatrix.m ├── fillout.m ├── filterout.m ├── flatten.m ├── flipdims.m ├── insertelt.m ├── placematrix.m ├── placematrix2.m ├── placematrixmulti.m ├── reshape2D.m ├── reshape2D_undo.m ├── reshapesquare.m ├── rotatematrix.m ├── sizefull.m ├── splitmatrix.m ├── splitruns.m ├── squeezedim.m ├── squish.m ├── upsamplematrix.m └── vflatten.m ├── mri ├── alignniftitonifti.m ├── calchrfpeak.m ├── computebrickandindices.m ├── computetemporalsnr.m ├── condition_split.m ├── constructhrfmodeldct.m ├── constructhrfmodeldelta.m ├── constructhrfmodelspline.m ├── constructstimulusmatrices.m ├── copyxform_nii.m ├── coregistervolumes.m ├── createspmmatrix.m ├── dicomloaddir.m ├── evaldoublegamma.m ├── expdesignefficiency.m ├── fithrfgammadouble.m ├── fmriquality.m ├── fmriquality_helper.m ├── fstoint.m ├── getcanonicalhrf.m ├── getcanonicalhrf2.m ├── getcanonicalhrflibrary.m ├── getcanonicalhrflibrary.tsv ├── getsamplehrf.m ├── homogenizevolumes.m ├── hrfgammadouble.m ├── inttofs.m ├── motioncorrectvolumes.m ├── preconditionvolume.m ├── quantifymotionparameters.m ├── resliceniftitomatch.m ├── settr_nii.m ├── surfaceslice2.m ├── undistortvolumes.m ├── write3dstack.m └── writespmfiles.m ├── programming ├── GPUconv.m ├── GPUok.m ├── allocatememory.m ├── alwaysone.m ├── alwayszero.m ├── assignseparatevars.m ├── assigntobaseworkspace.m ├── checkmemoryworkspace.m ├── checkpathconflicts.m ├── choose.m ├── consolidatemat.m ├── consolidatematdir.m ├── copymatrix.m ├── decodenum.m ├── defaultoptimset.m ├── encapsulate.m ├── encodenum.m ├── enforcenan.m ├── evalme.m ├── gethostname.m ├── getpid.c ├── getpid.m ├── getpid.mexa64 ├── getpid.mexmaci ├── gettimestring.m ├── gunziptemp.m ├── identity.m ├── infiniteloop.m ├── inputmulti.m ├── isfinitenum.m ├── isint.m ├── isrowvector.m ├── maketempdir.m ├── mergestructs.m ├── mkdirquiet.m ├── mtimesmulti.m ├── passmulti.m ├── pause2.m ├── playalarm.m ├── plusmulti.m ├── processchunks.m ├── promptforfile.m ├── repeatuntil.m ├── reportmemoryandtime.m ├── rmdirquiet.m ├── rowfun.m ├── sanitycheck.m ├── saveemptymat.m ├── setrandstate.m ├── sgerun2.m ├── statusdots.m ├── subsetfun.m ├── swap.m └── unix_wrapper.m ├── pt ├── calcfixationdotchangeperformance.m ├── preparedigits.m ├── pteyelinkoff.m ├── pteyelinkon.m ├── ptoff.m ├── pton.m ├── ptviewimage.m ├── ptviewmovie.m ├── ptviewmoviecheck.m ├── ptviewmoviecheck2.m ├── runfacedetection.m ├── runretinotopy.m ├── runretinotopy_instructions.txt └── showmulticlass.m ├── stats ├── applyfiltermultidim.m ├── bootstrap.m ├── bootstrapdim.m ├── calcconfusionmatrix.m ├── calcentropy.m ├── calcggaussianlikelihood.m ├── calcintrinsicdim.m ├── calcmutualinformation.m ├── calcmutualinformationcontinuous.m ├── calcnoiseceiling.m ├── calcoptimalhistbins.m ├── calcrbflikelihood.m ├── calcrectlikelihood.m ├── calcrobustsummary.m ├── calcsurfaceareanball.m ├── centerofmass.m ├── constructdctmatrix.m ├── constructdftmatrix.m ├── constructfiltersubsample.m ├── constructfiltertiling.m ├── constructpolynomialmatrix.m ├── constructpolynomialmatrix2d.m ├── constructpolynomialmatrix3d.m ├── evaldivnorm.m ├── evalgaussian1d.m ├── evalgaussian2d.m ├── evalgaussian2doriented.m ├── evalgaussian3d.m ├── evalgeneralizedgaussian.m ├── filter2subsample.m ├── findlocal.m ├── findtailthreshold.m ├── fit2dpolynomialmodel.m ├── fit3dpolynomialmodel.m ├── fit3dpolynomialmodel2.m ├── fitdivnorm.m ├── fitgaussian1d.m ├── fitgaussian2d.m ├── fitgaussian2doriented.m ├── fitgaussian3d.m ├── fitl1line.m ├── fitline2derror.m ├── fitnonlinearmodel.m ├── fitnonlinearmodel_consolidate.m ├── fitnonlinearmodel_helper.m ├── fitrbfpdf.m ├── fitrectdensity.m ├── fitrectpdf.m ├── gradientdescent.m ├── gradientdescent_wrapper.m ├── localregression.m ├── localregression2d.m ├── localregression3d.m ├── localregression4d.m ├── localregressionbandwidth.m ├── olscontrol.m ├── olsmatrix.m ├── olsmatrix2.m ├── outputfcnplot.m 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