├── LICENSE ├── README.md ├── main ├── analysis.m ├── analysis_anatomy.m ├── analysis_biascorrection.m ├── analysis_diffusion.m ├── analysis_drawnsdgeneral.m ├── analysis_drawrois_bodies.m ├── analysis_drawrois_faces.m ├── analysis_drawrois_facesandwords.m ├── analysis_drawrois_places.m ├── analysis_drawrois_prf_part01.m ├── analysis_drawrois_prf_part02.m ├── analysis_drawrois_prf_part03.m ├── analysis_drawrois_words.m ├── analysis_floc.m ├── analysis_floc_maps.m ├── analysis_freesurfer.m ├── analysis_freesurfer_flatgrids.m ├── analysis_freesurfer_flattenedsurfaces.m ├── analysis_freesurfer_flattenedsurfaces_rotation.m ├── analysis_freesurfer_fsaveragetransfer.m ├── analysis_prf.m ├── analysis_prf_maps.m ├── analysis_probmap.m ├── analysis_surfaceroistovolume.m ├── analysis_surfacevisualizations.m ├── analysis_surfacevisualizations_helper.m ├── analysis_surfacevoxels.m ├── analysis_transformMNI.m ├── analysis_transformfsaverage.m ├── analysis_transforms.m ├── analyzebehavior_floc.m ├── analyzebehavior_floc_visualize.m ├── analyzebehavior_nsd.m ├── analyzebehavior_nsd_filecheck.m ├── analyzebehavior_nsd_visualize.m ├── analyzebehavior_nsdsynthetic.m ├── analyzebehavior_prf.m ├── analyzebehavior_prf_visualize.m ├── autoqc_acquisition.m ├── autoqc_fmri.m ├── autoqc_glm_nsd.m ├── autoqc_nsd_grand.m ├── autoqc_nsd_grandfinale.m ├── datafix_script3a.m ├── datafix_script3b.m ├── export.m ├── export_noiseceiling.m ├── export_runmetrics.m ├── export_signaldropout.m ├── external_hippocampus.m ├── external_mtl.m ├── external_subcortical.m ├── glm_floc.m ├── glm_flocINITIALSCREENING.m ├── glm_nsd.m ├── glm_nsdSIMPLE.m ├── glm_nsdimagery2.m ├── glm_nsdrestingstate.m ├── glm_prf.m ├── glm_prfINITIALSCREENING.m ├── hrf_constructmanifold.m ├── hrf_derivecanonicalpcs.m ├── hrf_fitspmhrftomanifold.m ├── nsd_et_aggregate_analyses.m ├── nsd_et_crop.m ├── nsd_et_import.m ├── nsd_et_lookup.m ├── nsd_et_preproc_figures.m ├── nsd_et_preprocessing.m ├── nsd_et_savefig.m ├── nsd_et_trial_wise_analyses.m ├── nsdsetup.m ├── preprocess_nsd.m ├── preprocess_nsd_MNIandbrainmask.m ├── preprocess_nsd_SWI.m ├── preprocess_nsd_TOF.m ├── preprocess_nsd_applybrainmask.m ├── preprocess_nsd_calculatetransformations.m ├── preprocess_nsd_crop.m ├── preprocess_nsd_epialignment.m ├── preprocess_nsd_epigradunwarp.m ├── preprocess_nsd_fixepi.m ├── preprocess_nsd_functionaltostructuralalignment.m ├── preprocess_nsd_secondstage.m ├── preprocess_nsd_secondstageLOW.m ├── preprocess_nsd_secondstageLOW1s.m ├── preprocess_nsd_structuralalignment.m ├── preprocess_nsd_structuralinspection.m ├── runnsdbehavioralanalysis.m ├── runnsdsyntheticbehavioralanalysis.m └── translatevmetric.m ├── mainfigures ├── ACQUISITION │ ├── ACQUISITIONnotes.m │ ├── ANGIOGRAM │ │ └── angiogramvisualize.m │ ├── SCREENING │ │ └── SCREENINGnotes.m │ └── TIMELINE │ │ └── TIMELINEnotes.m ├── CHECKVALID │ └── CHECKVALIDnotes.m ├── EXPOSITION │ └── EXPOSITIONnotes.m ├── FINALNUMBERS │ └── FINALNUMBERSnotes.m ├── GRADUNWARP │ └── GRADUNWARPnotes.m ├── INSPECTIONS │ ├── COREGISTRATION │ │ └── COREGISTRATIONnotes.m │ ├── FSAVERAGECHECK │ │ └── FSAVERAGECHECKnotes.m │ ├── GRANDMEAN │ │ └── GRANDMEANnotes.m │ ├── GRANDVISUALIZATION │ │ └── GRANDVISUALIZATIONnotes.m │ ├── MNICHECK │ │ └── MNICHECKnotes.m │ ├── RAWDATAMOVIES │ │ └── RAWDATAMOVIESnotes.m │ ├── ROTATINGBRAIN │ │ └── ROTATINGBRAINnotes.m │ ├── SESSIONWISE │ │ └── SESSIONWISEnotes.m │ ├── SPECIALSCRUB │ │ └── SPECIALSCRUBnotes.m │ └── SUBJECTMONTAGE │ │ └── SUBJECTMONTAGEnotes.m ├── MANIFOLD │ ├── B3METHODS │ │ └── B3METHODSnotes.m │ └── MANIFOLD │ │ ├── MANIFOLDnotes.m │ │ └── fitspmhrftomanifold │ │ ├── hrfparams.mat │ │ ├── hrfparams_example.m │ │ └── results.mat ├── MAPOFSIGNAL │ ├── MAPOFSIGNALnotes.m │ └── results.mat ├── METRICS │ ├── METRICS_MOTION.m │ ├── METRICS_TSNR.m │ └── METRICSnotes.m ├── NSDSUMMARY │ ├── NSDSUMMARYbehavior.m │ └── NSDSUMMARYnotes.m ├── PAIRWISE │ └── PAIRWISEnotes.m ├── PARAMETERS │ ├── PARAMETERSnotes.m │ └── thecrop.mat ├── RAWDATA │ └── RAWDATAnotes.m ├── ROI │ └── ROInotes.m ├── SCIENCE.MEMORY │ └── SCIENCEMEMORYnotes.m ├── SCIENCE.RSA │ ├── SCIENCERSAnotes.m │ ├── analysis_drawrois_highlevelvisual.m │ ├── lh.highlevelvisual.mgz │ └── rh.highlevelvisual.mgz ├── SCREENING │ ├── BOLDSNR │ │ ├── BOLDSNRnotes.m │ │ └── results.mat │ ├── FINALPARTICIPANTSUMMARY │ │ └── FINALPARTICIPANTSUMMARYnotes.m │ └── PARTICIPANTSUMMARY │ │ └── PARTICIPANTSUMMARYnotes.m └── UPSAMPLING │ ├── TIMECOURSES │ └── TIMECOURSESnotes.m │ └── UPSAMPLINGnotes.m ├── nsd_recog ├── bincell_to_submat.m ├── get_adj_hr.m ├── get_allsubs_adj_hr.m ├── get_logsec_xticks.m ├── get_sess_fa.m ├── make_behav_figure.m ├── nonnan.m ├── plot_dots.m └── plot_patch.m └── prfestimation ├── CATEGORYANDPRFMODEL.m ├── LOADDATA1.m ├── LOADDATA2.m ├── LOADDATA2b.m ├── LOADDATA2c.m ├── PREPAREDATA.m ├── SAVEDATA.m ├── STIMULUSPREPROCESS.m ├── cvnlookupwrite.m ├── nsdfaceprf.m └── nsdfaceprffinish.m /LICENSE: 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