├── Data ├── Readme ├── data1.csv ├── data2.csv ├── data3.csv └── data4.csv ├── LICENSE.md ├── README.md ├── Results ├── Readme ├── VennDiagram.png ├── VennDiagram.svg ├── VennDiagram_quick_start.png ├── VennDiagram_quick_start.svg ├── VennDiagram_real_data.png ├── VennDiagram_real_data.svg ├── quick_start.png ├── quick_start.svg ├── real_data_upset_3only.png ├── real_data_upset_3only.svg ├── real_data_upset_extended.png ├── real_data_upset_extended.svg ├── real_data_upset_full.png ├── real_data_upset_full.svg ├── upset_3only.png ├── upset_3only.svg ├── upset_extended.png ├── upset_extended.svg ├── upset_full.png └── upset_full.svg └── Scripts ├── Readme ├── customized_upset_plot_2023_01_19_downstream_of_complexheatmap.Rmd ├── customized_upset_plot_2023_01_19_quick_start.Rmd └── customized_upset_plot_2023_01_19_read_data.Rmd /Data/Readme: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Data/Readme -------------------------------------------------------------------------------- /Data/data1.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Data/data1.csv -------------------------------------------------------------------------------- /Data/data2.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Data/data2.csv -------------------------------------------------------------------------------- /Data/data3.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Data/data3.csv -------------------------------------------------------------------------------- /Data/data4.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Data/data4.csv -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/LICENSE.md -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/README.md -------------------------------------------------------------------------------- /Results/Readme: -------------------------------------------------------------------------------- 1 | Graph outputs will be here. 2 | -------------------------------------------------------------------------------- /Results/VennDiagram.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/VennDiagram.png -------------------------------------------------------------------------------- /Results/VennDiagram.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/VennDiagram.svg -------------------------------------------------------------------------------- /Results/VennDiagram_quick_start.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/VennDiagram_quick_start.png -------------------------------------------------------------------------------- /Results/VennDiagram_quick_start.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/VennDiagram_quick_start.svg -------------------------------------------------------------------------------- /Results/VennDiagram_real_data.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/VennDiagram_real_data.png -------------------------------------------------------------------------------- /Results/VennDiagram_real_data.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/VennDiagram_real_data.svg -------------------------------------------------------------------------------- /Results/quick_start.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/quick_start.png -------------------------------------------------------------------------------- /Results/quick_start.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/quick_start.svg -------------------------------------------------------------------------------- /Results/real_data_upset_3only.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/real_data_upset_3only.png -------------------------------------------------------------------------------- /Results/real_data_upset_3only.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/real_data_upset_3only.svg -------------------------------------------------------------------------------- /Results/real_data_upset_extended.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/real_data_upset_extended.png -------------------------------------------------------------------------------- /Results/real_data_upset_extended.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/real_data_upset_extended.svg -------------------------------------------------------------------------------- /Results/real_data_upset_full.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/real_data_upset_full.png -------------------------------------------------------------------------------- /Results/real_data_upset_full.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/real_data_upset_full.svg -------------------------------------------------------------------------------- /Results/upset_3only.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/upset_3only.png -------------------------------------------------------------------------------- /Results/upset_3only.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/upset_3only.svg -------------------------------------------------------------------------------- /Results/upset_extended.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/upset_extended.png -------------------------------------------------------------------------------- /Results/upset_extended.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/upset_extended.svg -------------------------------------------------------------------------------- /Results/upset_full.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/upset_full.png -------------------------------------------------------------------------------- /Results/upset_full.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Results/upset_full.svg -------------------------------------------------------------------------------- /Scripts/Readme: -------------------------------------------------------------------------------- 1 | Here are .Rmd files to generate customized upset plots. 2 | -------------------------------------------------------------------------------- /Scripts/customized_upset_plot_2023_01_19_downstream_of_complexheatmap.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Scripts/customized_upset_plot_2023_01_19_downstream_of_complexheatmap.Rmd -------------------------------------------------------------------------------- /Scripts/customized_upset_plot_2023_01_19_quick_start.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Scripts/customized_upset_plot_2023_01_19_quick_start.Rmd -------------------------------------------------------------------------------- /Scripts/customized_upset_plot_2023_01_19_read_data.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cxli233/customized_upset_plots/HEAD/Scripts/customized_upset_plot_2023_01_19_read_data.Rmd --------------------------------------------------------------------------------