├── .gitignore ├── .idea ├── .gitignore ├── inspectionProfiles │ └── profiles_settings.xml ├── misc.xml ├── modules.xml ├── py4cytoscape.iml └── vcs.xml ├── .readthedocs.yaml ├── BUILDING.rst ├── INSTALL.rst ├── LICENSE.rst ├── LOGGING.rst ├── README.md ├── TESTING.rst ├── doc ├── Makefile ├── _static │ ├── copybutton.js │ ├── css │ │ ├── bullets.css │ │ ├── functions.css │ │ └── sections.css │ └── images │ │ ├── cytoscape3-icon-trans-128x128.png │ │ └── cytoscape3-icon.ico ├── _templates │ └── layout.html ├── citing.rst ├── concepts.rst ├── conf.py ├── credits.rst ├── images │ ├── InstallingFileTransferApp.png │ ├── launchDesktop.jpg │ └── openTutorial.jpg ├── index.rst ├── install.rst ├── license.rst ├── logging.rst ├── make.bat ├── reference │ ├── annotations.rst │ ├── apps.rst │ ├── collections.rst │ ├── commands.rst │ ├── cy_ndex.rst │ ├── cytoscape_system.rst │ ├── exceptions.rst │ ├── filters.rst │ ├── groups.rst │ ├── index.rst │ ├── layouts.rst │ ├── networks.rst │ ├── notebook.rst │ ├── sandbox.rst │ ├── session.rst │ ├── styles.rst │ ├── tables.rst │ ├── tools.rst │ ├── user_interface.rst │ └── utils.rst ├── release │ ├── release_0.0.1.rst │ ├── release_0.0.11.rst │ ├── release_0.0.3.rst │ ├── release_0.0.4.rst │ ├── release_0.0.5.rst │ ├── release_0.0.6.rst │ ├── release_0.0.7.rst │ ├── release_0.0.8.rst │ ├── release_0.0.9.rst │ ├── release_1.10.0.rst │ ├── release_1.11.0.rst │ ├── release_1.12.0.rst │ ├── release_1.2.0.rst │ ├── release_1.3.0.rst │ ├── release_1.4.0.rst │ ├── release_1.5.0.rst │ ├── release_1.6.0.rst │ ├── release_1.7.0.rst │ ├── release_1.8.0.rst │ └── release_1.9.0.rst ├── release_log.rst ├── requirements.txt └── tutorials │ └── index.rst ├── py4cytoscape ├── __init__.py ├── _version.py ├── annotations.py ├── apps.py ├── collections.py ├── commands.py ├── cy_ndex.py ├── cytoscape_system.py ├── decorators.py ├── exceptions.py ├── filters.py ├── groups.py ├── layouts.py ├── network_selection.py ├── network_views.py ├── networks.py ├── notebook.py ├── py4cytoscape_logger.py ├── py4cytoscape_logger_settings.py ├── py4cytoscape_notebook.py ├── py4cytoscape_sandbox.py ├── py4cytoscape_tuning.py ├── py4cytoscape_utils.py ├── sandbox.py ├── session.py ├── style_auto_mappings.py ├── style_bypasses.py ├── style_defaults.py ├── style_dependencies.py ├── style_mappings.py ├── style_values.py ├── style_visual_props.py ├── styles.py ├── tables.py ├── tools.py └── user_interface.py ├── setup.py ├── tests ├── Carissa.ipynb ├── Harsh1.ipynb ├── Notebooks │ ├── Barabasi │ │ ├── disease.net.txt │ │ ├── gene.net.txt │ │ ├── supplementary_tableS2.txt │ │ ├── supplementary_tableS3.txt │ │ └── supplementary_tableS4.txt │ ├── Gang Su Basic Protocol 2.ipynb │ ├── Gang Su basic protocol 1.ipynb │ └── parse_dendogram.py ├── data │ ├── Affinity Purification.cys │ ├── All Predicates.filter │ ├── CommandScript.txt │ ├── Import & Save.cys │ ├── Multiple Collections.cys │ ├── Styles Demo.cys │ ├── Yeast Gene Interactions.cys │ ├── Yeast Perturbation.cys │ ├── defaultedge_table.tsv │ ├── defaultnode_table.COMMON.tsv │ ├── defaultnode_table.backwards.tsv │ ├── defaultnode_table.empty.tsv │ ├── defaultnode_table.extra-lines.tsv │ ├── defaultnode_table.no-header.tsv │ ├── defaultnode_table.semi-delimiter.txt │ ├── defaultnode_table.tsv │ ├── defaultnode_table.xlsx │ ├── disease.net.default.txt │ ├── disease.net.default.xlsx │ ├── disease.net.delimiters.txt │ ├── disease.net.extra-header.txt │ ├── disease.net.interaction.txt │ ├── disease.net.no-header.txt │ ├── disease.net.no-interaction.txt │ ├── galFiltered.sif │ ├── module_df.txt │ └── yeastHighQuality.sif ├── output │ └── test.ps ├── runalltests.bat ├── runalltests.sh ├── runsanitytests.bat ├── scratchpad │ ├── Alexandra.ipynb │ ├── MITAB test.py │ ├── Tree Experiment.py │ ├── barry_edges.csv │ ├── barry_nodes.csv │ ├── disease.net.txt │ ├── edges_COAD.tsv │ ├── nodes_COAD.tsv │ ├── sandbox_set_remove.py │ ├── test_alexandra.py │ ├── test_dataframe.py │ ├── test_discrete.py │ ├── test_kozo_df.py │ ├── test_rafael.py │ ├── test_scratchpad.py │ ├── test_scratchpad_suid_name.py │ ├── test_suhas.py │ ├── test_yasir.py │ └── yFiles.ipynb ├── test_annotations.py ├── test_apps.py ├── test_collections.py ├── test_commands.py ├── test_cy_ndex.py ├── test_cytoscape_system.py ├── test_filters.py ├── test_groups.py ├── test_layouts.py ├── test_network_selection.py ├── test_network_views.py ├── test_networks.py ├── test_py4cytoscape_utils.py ├── test_sandbox.py ├── test_sanity.py ├── test_session.py ├── test_style_auto_mappings.py ├── test_style_bypasses.py ├── test_style_defaults.py ├── test_style_dependencies.py ├── test_style_mappings.py ├── test_style_values.py ├── test_styles.py ├── test_tables.py ├── test_tools.py ├── test_user_interface.py └── test_utils │ ├── __init__.py │ ├── __init__.pyc │ ├── __pycache__ │ ├── __init__.cpython-38.pyc │ └── helpers.cpython-38.pyc │ └── helpers.py └── utils └── dump_funcs.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/.gitignore -------------------------------------------------------------------------------- /.idea/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/.idea/.gitignore -------------------------------------------------------------------------------- /.idea/inspectionProfiles/profiles_settings.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/.idea/inspectionProfiles/profiles_settings.xml -------------------------------------------------------------------------------- /.idea/misc.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/.idea/misc.xml -------------------------------------------------------------------------------- /.idea/modules.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/.idea/modules.xml -------------------------------------------------------------------------------- /.idea/py4cytoscape.iml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/.idea/py4cytoscape.iml -------------------------------------------------------------------------------- /.idea/vcs.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/.idea/vcs.xml -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /BUILDING.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/BUILDING.rst -------------------------------------------------------------------------------- /INSTALL.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/INSTALL.rst -------------------------------------------------------------------------------- /LICENSE.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/LICENSE.rst -------------------------------------------------------------------------------- /LOGGING.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/LOGGING.rst -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/README.md -------------------------------------------------------------------------------- /TESTING.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/TESTING.rst -------------------------------------------------------------------------------- /doc/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/Makefile -------------------------------------------------------------------------------- /doc/_static/copybutton.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/_static/copybutton.js -------------------------------------------------------------------------------- /doc/_static/css/bullets.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/_static/css/bullets.css -------------------------------------------------------------------------------- /doc/_static/css/functions.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/_static/css/functions.css -------------------------------------------------------------------------------- /doc/_static/css/sections.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/_static/css/sections.css -------------------------------------------------------------------------------- /doc/_static/images/cytoscape3-icon-trans-128x128.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/_static/images/cytoscape3-icon-trans-128x128.png -------------------------------------------------------------------------------- /doc/_static/images/cytoscape3-icon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/_static/images/cytoscape3-icon.ico -------------------------------------------------------------------------------- /doc/_templates/layout.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/_templates/layout.html -------------------------------------------------------------------------------- /doc/citing.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/citing.rst -------------------------------------------------------------------------------- /doc/concepts.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/concepts.rst -------------------------------------------------------------------------------- /doc/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/conf.py -------------------------------------------------------------------------------- /doc/credits.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/credits.rst -------------------------------------------------------------------------------- /doc/images/InstallingFileTransferApp.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/images/InstallingFileTransferApp.png -------------------------------------------------------------------------------- /doc/images/launchDesktop.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/images/launchDesktop.jpg -------------------------------------------------------------------------------- /doc/images/openTutorial.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/images/openTutorial.jpg -------------------------------------------------------------------------------- /doc/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/index.rst -------------------------------------------------------------------------------- /doc/install.rst: -------------------------------------------------------------------------------- 1 | .. _install: 2 | 3 | .. include:: ../INSTALL.rst 4 | -------------------------------------------------------------------------------- /doc/license.rst: -------------------------------------------------------------------------------- 1 | .. _license: 2 | 3 | .. include:: ../LICENSE.rst 4 | -------------------------------------------------------------------------------- /doc/logging.rst: -------------------------------------------------------------------------------- 1 | .. _logging: 2 | 3 | .. include:: ../LOGGING.rst 4 | -------------------------------------------------------------------------------- /doc/make.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/make.bat -------------------------------------------------------------------------------- /doc/reference/annotations.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/annotations.rst -------------------------------------------------------------------------------- /doc/reference/apps.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/apps.rst -------------------------------------------------------------------------------- /doc/reference/collections.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/collections.rst -------------------------------------------------------------------------------- /doc/reference/commands.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/commands.rst -------------------------------------------------------------------------------- /doc/reference/cy_ndex.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/cy_ndex.rst -------------------------------------------------------------------------------- /doc/reference/cytoscape_system.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/cytoscape_system.rst -------------------------------------------------------------------------------- /doc/reference/exceptions.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/exceptions.rst -------------------------------------------------------------------------------- /doc/reference/filters.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/filters.rst -------------------------------------------------------------------------------- /doc/reference/groups.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/groups.rst -------------------------------------------------------------------------------- /doc/reference/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/index.rst -------------------------------------------------------------------------------- /doc/reference/layouts.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/layouts.rst -------------------------------------------------------------------------------- /doc/reference/networks.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/networks.rst -------------------------------------------------------------------------------- /doc/reference/notebook.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/notebook.rst -------------------------------------------------------------------------------- /doc/reference/sandbox.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/sandbox.rst -------------------------------------------------------------------------------- /doc/reference/session.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/session.rst -------------------------------------------------------------------------------- /doc/reference/styles.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/styles.rst -------------------------------------------------------------------------------- /doc/reference/tables.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/tables.rst -------------------------------------------------------------------------------- /doc/reference/tools.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/tools.rst -------------------------------------------------------------------------------- /doc/reference/user_interface.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/user_interface.rst -------------------------------------------------------------------------------- /doc/reference/utils.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/reference/utils.rst -------------------------------------------------------------------------------- /doc/release/release_0.0.1.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_0.0.1.rst -------------------------------------------------------------------------------- /doc/release/release_0.0.11.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_0.0.11.rst -------------------------------------------------------------------------------- /doc/release/release_0.0.3.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_0.0.3.rst -------------------------------------------------------------------------------- /doc/release/release_0.0.4.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_0.0.4.rst -------------------------------------------------------------------------------- /doc/release/release_0.0.5.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_0.0.5.rst -------------------------------------------------------------------------------- /doc/release/release_0.0.6.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_0.0.6.rst -------------------------------------------------------------------------------- /doc/release/release_0.0.7.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_0.0.7.rst -------------------------------------------------------------------------------- /doc/release/release_0.0.8.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_0.0.8.rst -------------------------------------------------------------------------------- /doc/release/release_0.0.9.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_0.0.9.rst -------------------------------------------------------------------------------- /doc/release/release_1.10.0.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_1.10.0.rst -------------------------------------------------------------------------------- /doc/release/release_1.11.0.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_1.11.0.rst -------------------------------------------------------------------------------- /doc/release/release_1.12.0.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_1.12.0.rst -------------------------------------------------------------------------------- /doc/release/release_1.2.0.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_1.2.0.rst -------------------------------------------------------------------------------- /doc/release/release_1.3.0.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_1.3.0.rst -------------------------------------------------------------------------------- /doc/release/release_1.4.0.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_1.4.0.rst -------------------------------------------------------------------------------- /doc/release/release_1.5.0.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_1.5.0.rst -------------------------------------------------------------------------------- /doc/release/release_1.6.0.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_1.6.0.rst -------------------------------------------------------------------------------- /doc/release/release_1.7.0.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_1.7.0.rst -------------------------------------------------------------------------------- /doc/release/release_1.8.0.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_1.8.0.rst -------------------------------------------------------------------------------- /doc/release/release_1.9.0.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release/release_1.9.0.rst -------------------------------------------------------------------------------- /doc/release_log.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/release_log.rst -------------------------------------------------------------------------------- /doc/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/requirements.txt -------------------------------------------------------------------------------- /doc/tutorials/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/doc/tutorials/index.rst -------------------------------------------------------------------------------- /py4cytoscape/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/__init__.py -------------------------------------------------------------------------------- /py4cytoscape/_version.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/_version.py -------------------------------------------------------------------------------- /py4cytoscape/annotations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/annotations.py -------------------------------------------------------------------------------- /py4cytoscape/apps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/apps.py -------------------------------------------------------------------------------- /py4cytoscape/collections.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/collections.py -------------------------------------------------------------------------------- /py4cytoscape/commands.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/commands.py -------------------------------------------------------------------------------- /py4cytoscape/cy_ndex.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/cy_ndex.py -------------------------------------------------------------------------------- /py4cytoscape/cytoscape_system.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/cytoscape_system.py -------------------------------------------------------------------------------- /py4cytoscape/decorators.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/decorators.py -------------------------------------------------------------------------------- /py4cytoscape/exceptions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/exceptions.py -------------------------------------------------------------------------------- /py4cytoscape/filters.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/filters.py -------------------------------------------------------------------------------- /py4cytoscape/groups.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/groups.py -------------------------------------------------------------------------------- /py4cytoscape/layouts.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/layouts.py -------------------------------------------------------------------------------- /py4cytoscape/network_selection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/network_selection.py -------------------------------------------------------------------------------- /py4cytoscape/network_views.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/network_views.py -------------------------------------------------------------------------------- /py4cytoscape/networks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/networks.py -------------------------------------------------------------------------------- /py4cytoscape/notebook.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/notebook.py -------------------------------------------------------------------------------- /py4cytoscape/py4cytoscape_logger.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/py4cytoscape_logger.py -------------------------------------------------------------------------------- /py4cytoscape/py4cytoscape_logger_settings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/py4cytoscape_logger_settings.py -------------------------------------------------------------------------------- /py4cytoscape/py4cytoscape_notebook.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/py4cytoscape_notebook.py -------------------------------------------------------------------------------- /py4cytoscape/py4cytoscape_sandbox.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/py4cytoscape_sandbox.py -------------------------------------------------------------------------------- /py4cytoscape/py4cytoscape_tuning.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/py4cytoscape_tuning.py -------------------------------------------------------------------------------- /py4cytoscape/py4cytoscape_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/py4cytoscape_utils.py -------------------------------------------------------------------------------- /py4cytoscape/sandbox.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/sandbox.py -------------------------------------------------------------------------------- /py4cytoscape/session.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/session.py -------------------------------------------------------------------------------- /py4cytoscape/style_auto_mappings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/style_auto_mappings.py -------------------------------------------------------------------------------- /py4cytoscape/style_bypasses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/style_bypasses.py -------------------------------------------------------------------------------- /py4cytoscape/style_defaults.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/style_defaults.py -------------------------------------------------------------------------------- /py4cytoscape/style_dependencies.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/style_dependencies.py -------------------------------------------------------------------------------- /py4cytoscape/style_mappings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/style_mappings.py -------------------------------------------------------------------------------- /py4cytoscape/style_values.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/style_values.py -------------------------------------------------------------------------------- /py4cytoscape/style_visual_props.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/style_visual_props.py -------------------------------------------------------------------------------- /py4cytoscape/styles.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/styles.py -------------------------------------------------------------------------------- /py4cytoscape/tables.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/tables.py -------------------------------------------------------------------------------- /py4cytoscape/tools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/tools.py -------------------------------------------------------------------------------- /py4cytoscape/user_interface.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/py4cytoscape/user_interface.py -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/setup.py -------------------------------------------------------------------------------- /tests/Carissa.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/Carissa.ipynb -------------------------------------------------------------------------------- /tests/Harsh1.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/Harsh1.ipynb -------------------------------------------------------------------------------- /tests/Notebooks/Barabasi/disease.net.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/Notebooks/Barabasi/disease.net.txt -------------------------------------------------------------------------------- /tests/Notebooks/Barabasi/gene.net.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/Notebooks/Barabasi/gene.net.txt -------------------------------------------------------------------------------- /tests/Notebooks/Barabasi/supplementary_tableS2.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/Notebooks/Barabasi/supplementary_tableS2.txt -------------------------------------------------------------------------------- /tests/Notebooks/Barabasi/supplementary_tableS3.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/Notebooks/Barabasi/supplementary_tableS3.txt -------------------------------------------------------------------------------- /tests/Notebooks/Barabasi/supplementary_tableS4.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/Notebooks/Barabasi/supplementary_tableS4.txt -------------------------------------------------------------------------------- /tests/Notebooks/Gang Su Basic Protocol 2.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/Notebooks/Gang Su Basic Protocol 2.ipynb -------------------------------------------------------------------------------- /tests/Notebooks/Gang Su basic protocol 1.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/Notebooks/Gang Su basic protocol 1.ipynb -------------------------------------------------------------------------------- /tests/Notebooks/parse_dendogram.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/Notebooks/parse_dendogram.py -------------------------------------------------------------------------------- /tests/data/Affinity Purification.cys: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/Affinity Purification.cys -------------------------------------------------------------------------------- /tests/data/All Predicates.filter: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/All Predicates.filter -------------------------------------------------------------------------------- /tests/data/CommandScript.txt: -------------------------------------------------------------------------------- 1 | session new 2 | -------------------------------------------------------------------------------- /tests/data/Import & Save.cys: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/Import & Save.cys -------------------------------------------------------------------------------- /tests/data/Multiple Collections.cys: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/Multiple Collections.cys -------------------------------------------------------------------------------- /tests/data/Styles Demo.cys: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/Styles Demo.cys -------------------------------------------------------------------------------- /tests/data/Yeast Gene Interactions.cys: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/Yeast Gene Interactions.cys -------------------------------------------------------------------------------- /tests/data/Yeast Perturbation.cys: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/Yeast Perturbation.cys -------------------------------------------------------------------------------- /tests/data/defaultedge_table.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/defaultedge_table.tsv -------------------------------------------------------------------------------- /tests/data/defaultnode_table.COMMON.tsv: -------------------------------------------------------------------------------- 1 | id newcol 2 | SNF3 1 3 | MTH1 2 4 | YBR043C 3 5 | -------------------------------------------------------------------------------- /tests/data/defaultnode_table.backwards.tsv: -------------------------------------------------------------------------------- 1 | newcol id 2 | 1 YDL194W 3 | 2 YDR277C 4 | 3 YBR043C 5 | -------------------------------------------------------------------------------- /tests/data/defaultnode_table.empty.tsv: -------------------------------------------------------------------------------- 1 | id newcol emptycol 2 | YBR043C 3 3 | 4 | -------------------------------------------------------------------------------- /tests/data/defaultnode_table.extra-lines.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/defaultnode_table.extra-lines.tsv -------------------------------------------------------------------------------- /tests/data/defaultnode_table.no-header.tsv: -------------------------------------------------------------------------------- 1 | YDL194W 1 2 | YDR277C 2 3 | YBR043C 3 4 | -------------------------------------------------------------------------------- /tests/data/defaultnode_table.semi-delimiter.txt: -------------------------------------------------------------------------------- 1 | YDL194W 1 2 | YDR277C;2 3 | YBR043C 3 4 | -------------------------------------------------------------------------------- /tests/data/defaultnode_table.tsv: -------------------------------------------------------------------------------- 1 | id newcol 2 | YDL194W 1 3 | YDR277C 2 4 | YBR043C 3 5 | -------------------------------------------------------------------------------- /tests/data/defaultnode_table.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/defaultnode_table.xlsx -------------------------------------------------------------------------------- /tests/data/disease.net.default.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/disease.net.default.txt -------------------------------------------------------------------------------- /tests/data/disease.net.default.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/disease.net.default.xlsx -------------------------------------------------------------------------------- /tests/data/disease.net.delimiters.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/disease.net.delimiters.txt -------------------------------------------------------------------------------- /tests/data/disease.net.extra-header.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/disease.net.extra-header.txt -------------------------------------------------------------------------------- /tests/data/disease.net.interaction.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/disease.net.interaction.txt -------------------------------------------------------------------------------- /tests/data/disease.net.no-header.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/disease.net.no-header.txt -------------------------------------------------------------------------------- /tests/data/disease.net.no-interaction.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/disease.net.no-interaction.txt -------------------------------------------------------------------------------- /tests/data/galFiltered.sif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/galFiltered.sif -------------------------------------------------------------------------------- /tests/data/module_df.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/module_df.txt -------------------------------------------------------------------------------- /tests/data/yeastHighQuality.sif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/data/yeastHighQuality.sif -------------------------------------------------------------------------------- /tests/output/test.ps: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/output/test.ps -------------------------------------------------------------------------------- /tests/runalltests.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/runalltests.bat -------------------------------------------------------------------------------- /tests/runalltests.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/runalltests.sh -------------------------------------------------------------------------------- /tests/runsanitytests.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/runsanitytests.bat -------------------------------------------------------------------------------- /tests/scratchpad/Alexandra.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/Alexandra.ipynb -------------------------------------------------------------------------------- /tests/scratchpad/MITAB test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/MITAB test.py -------------------------------------------------------------------------------- /tests/scratchpad/Tree Experiment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/Tree Experiment.py -------------------------------------------------------------------------------- /tests/scratchpad/barry_edges.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/barry_edges.csv -------------------------------------------------------------------------------- /tests/scratchpad/barry_nodes.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/barry_nodes.csv -------------------------------------------------------------------------------- /tests/scratchpad/disease.net.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/disease.net.txt -------------------------------------------------------------------------------- /tests/scratchpad/edges_COAD.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/edges_COAD.tsv -------------------------------------------------------------------------------- /tests/scratchpad/nodes_COAD.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/nodes_COAD.tsv -------------------------------------------------------------------------------- /tests/scratchpad/sandbox_set_remove.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/sandbox_set_remove.py -------------------------------------------------------------------------------- /tests/scratchpad/test_alexandra.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/test_alexandra.py -------------------------------------------------------------------------------- /tests/scratchpad/test_dataframe.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/test_dataframe.py -------------------------------------------------------------------------------- /tests/scratchpad/test_discrete.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/test_discrete.py -------------------------------------------------------------------------------- /tests/scratchpad/test_kozo_df.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/test_kozo_df.py -------------------------------------------------------------------------------- /tests/scratchpad/test_rafael.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/test_rafael.py -------------------------------------------------------------------------------- /tests/scratchpad/test_scratchpad.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/test_scratchpad.py -------------------------------------------------------------------------------- /tests/scratchpad/test_scratchpad_suid_name.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/test_scratchpad_suid_name.py -------------------------------------------------------------------------------- /tests/scratchpad/test_suhas.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/test_suhas.py -------------------------------------------------------------------------------- /tests/scratchpad/test_yasir.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/test_yasir.py -------------------------------------------------------------------------------- /tests/scratchpad/yFiles.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/scratchpad/yFiles.ipynb -------------------------------------------------------------------------------- /tests/test_annotations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_annotations.py -------------------------------------------------------------------------------- /tests/test_apps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_apps.py -------------------------------------------------------------------------------- /tests/test_collections.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_collections.py -------------------------------------------------------------------------------- /tests/test_commands.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_commands.py -------------------------------------------------------------------------------- /tests/test_cy_ndex.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_cy_ndex.py -------------------------------------------------------------------------------- /tests/test_cytoscape_system.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_cytoscape_system.py -------------------------------------------------------------------------------- /tests/test_filters.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_filters.py -------------------------------------------------------------------------------- /tests/test_groups.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_groups.py -------------------------------------------------------------------------------- /tests/test_layouts.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_layouts.py -------------------------------------------------------------------------------- /tests/test_network_selection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_network_selection.py -------------------------------------------------------------------------------- /tests/test_network_views.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_network_views.py -------------------------------------------------------------------------------- /tests/test_networks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_networks.py -------------------------------------------------------------------------------- /tests/test_py4cytoscape_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_py4cytoscape_utils.py -------------------------------------------------------------------------------- /tests/test_sandbox.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_sandbox.py -------------------------------------------------------------------------------- /tests/test_sanity.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_sanity.py -------------------------------------------------------------------------------- /tests/test_session.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_session.py -------------------------------------------------------------------------------- /tests/test_style_auto_mappings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_style_auto_mappings.py -------------------------------------------------------------------------------- /tests/test_style_bypasses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_style_bypasses.py -------------------------------------------------------------------------------- /tests/test_style_defaults.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_style_defaults.py -------------------------------------------------------------------------------- /tests/test_style_dependencies.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_style_dependencies.py -------------------------------------------------------------------------------- /tests/test_style_mappings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_style_mappings.py -------------------------------------------------------------------------------- /tests/test_style_values.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_style_values.py -------------------------------------------------------------------------------- /tests/test_styles.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_styles.py -------------------------------------------------------------------------------- /tests/test_tables.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_tables.py -------------------------------------------------------------------------------- /tests/test_tools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_tools.py -------------------------------------------------------------------------------- /tests/test_user_interface.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_user_interface.py -------------------------------------------------------------------------------- /tests/test_utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_utils/__init__.py -------------------------------------------------------------------------------- /tests/test_utils/__init__.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_utils/__init__.pyc -------------------------------------------------------------------------------- /tests/test_utils/__pycache__/__init__.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_utils/__pycache__/__init__.cpython-38.pyc -------------------------------------------------------------------------------- /tests/test_utils/__pycache__/helpers.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_utils/__pycache__/helpers.cpython-38.pyc -------------------------------------------------------------------------------- /tests/test_utils/helpers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/tests/test_utils/helpers.py -------------------------------------------------------------------------------- /utils/dump_funcs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/cytoscape/py4cytoscape/HEAD/utils/dump_funcs.py --------------------------------------------------------------------------------