├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md └── workflows │ ├── publish.yml │ └── test.yml ├── .gitignore ├── .pre-commit-config.yaml ├── LICENSE ├── Makefile ├── README.md ├── data ├── SILAC_SQ.mzTab ├── combined_protein.tsv ├── download_data.sh ├── proteinGroups.txt ├── report.pg_matrix.tsv └── spectronaut_normal.tsv ├── docs ├── Makefile └── source │ ├── _static │ └── img │ │ ├── protdata_favicon.svg │ │ └── protdata_schema.svg │ ├── api │ ├── generated │ │ ├── protdata.io.read_diann.rst │ │ ├── protdata.io.read_fragpipe.rst │ │ ├── protdata.io.read_maxquant.rst │ │ ├── protdata.io.read_mztab.rst │ │ ├── protdata.io.read_spectronaut.rst │ │ └── protdata.rst │ └── index.rst │ ├── conf.py │ ├── contributing.rst │ ├── index.rst │ ├── release_notes.rst │ └── tutorials │ ├── getting_started.rst │ └── index.rst ├── protdata ├── __init__.py └── io │ ├── __init__.py │ ├── diann_loader.py │ ├── fragpipe_loader.py │ ├── maxquant_loader.py │ ├── mztab_loader.py │ ├── spectronaut_loader.py │ └── utils.py ├── pyproject.toml ├── setup.cfg └── tests ├── test_loaders.py ├── test_maxquant_loader.py └── test_spectronaut_loader.py /.github/ISSUE_TEMPLATE/bug_report.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/czbiohub-sf/protdata/HEAD/.github/ISSUE_TEMPLATE/bug_report.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/feature_request.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/czbiohub-sf/protdata/HEAD/.github/ISSUE_TEMPLATE/feature_request.md -------------------------------------------------------------------------------- /.github/workflows/publish.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/czbiohub-sf/protdata/HEAD/.github/workflows/publish.yml 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