├── .gitignore ├── LICENSE.txt ├── README.md ├── covews ├── __init__.py ├── apps │ ├── __init__.py │ ├── base_application.py │ ├── main.py │ ├── parameters.py │ └── util.py ├── data_access │ ├── __init__.py │ ├── base_data_loader.py │ ├── data_model │ │ ├── __init__.py │ │ └── patient.py │ ├── generator.py │ ├── meta_data │ │ ├── __init__.py │ │ └── feature_types.py │ ├── pickle_data_loader.py │ └── preprocessing │ │ ├── __init__.py │ │ ├── base_processor.py │ │ ├── custom_imputer.py │ │ ├── drop_missing.py │ │ ├── impute_missing.py │ │ ├── limit_range.py │ │ ├── one_hot_discretise.py │ │ └── standardise.py └── models │ ├── __init__.py │ ├── baselines │ ├── __init__.py │ ├── base_model.py │ ├── nonlinear_time_varying_cox.py │ └── time_varying_cox.py │ ├── calibration_wrapper.py │ ├── model_evaluation.py │ └── nonlinear_cox │ ├── __init__.py │ ├── cox_time_varying_fitter.py │ └── nonlinear_time_varying_cox.py ├── mock_patients.pickle └── setup.py /.gitignore: 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