├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ └── pkgdown.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── R ├── bind_tip.R ├── data.R ├── get_one_tree.R ├── get_tree.R ├── rtrees-package.R └── utils.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── data-raw └── classification.R ├── data ├── classifications.rda └── taxa_supported.rda ├── inst └── CITATION ├── man ├── add_root_info.Rd ├── bind_tip.Rd ├── bind_tip_df.Rd ├── classifications.Rd ├── figures │ ├── README-unnamed-chunk-10-1.png │ ├── README-unnamed-chunk-6-1.png │ ├── README-unnamed-chunk-7-1.png │ ├── README-unnamed-chunk-8-1.png │ └── README-unnamed-chunk-9-1.png ├── fmatch.Rd ├── get_graft_status.Rd ├── get_one_tree.Rd ├── get_tree.Rd ├── rm_stars.Rd ├── rtrees-package.Rd ├── sp_list_df.Rd └── taxa_supported.Rd ├── rtrees.Rproj ├── tests ├── testthat.R └── testthat │ ├── helper_splists.R │ ├── test_get_tree.R │ └── test_utils.R └── vignettes ├── .gitignore ├── Non-monophyletic-groups.Rmd ├── Simple_example.Rmd ├── grafting_scenarios.Rmd └── speed.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/daijiang/rtrees/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/pkgdown.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/daijiang/rtrees/HEAD/.github/workflows/pkgdown.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/daijiang/rtrees/HEAD/.gitignore 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