├── .gitattributes ├── .gitignore ├── Github_update.txt ├── LICENSE.md ├── QUICKSTART_Marmousi.txt ├── README.md ├── authors.txt ├── bin └── .gitignore ├── include ├── fd.h ├── globvar.h ├── segy.h └── segy.h.legalstatement ├── jobs ├── DENISE_marmousi_NEC.job └── run.sh ├── libcseife ├── Makefile ├── README ├── cseife.c ├── cseife.h ├── cseife_deriv.c ├── cseife_gauss.c ├── cseife_rekfl.c ├── cseife_rfk.c └── cseife_tides.c ├── par ├── DENISE_marm_OBC.inp ├── FWI_workflow_marmousi.inp ├── RTM_workflow_marmousi.inp ├── gravity │ └── .gitignore ├── jacobian │ └── .gitignore ├── log │ └── .gitignore ├── model │ └── .gitignore ├── picked_times │ └── .gitignore ├── pythonIO │ ├── DENISE-python_IO.ipynb │ └── denise_IO │ │ └── denise_out.py ├── pythonIO_SH │ ├── No_001_DENISE-SH_create_init_model.ipynb │ └── denise_SH_IO │ │ └── denise_sh_out.py ├── receiver │ └── receiver_OBC.dat ├── shell_scripts │ ├── addnoise_gauss.sh │ ├── compileDENISE.sh │ ├── compileLIBRARIES.sh │ ├── copy_rec_file.sh │ ├── create_zero_offset.sh │ ├── del_hessian.sh │ ├── gradDiff.sh │ ├── move_x_y.sh │ └── time_lapse_data_diff.sh ├── snap │ └── .gitignore ├── source │ └── source_OBC_VSP.dat ├── start │ └── .gitignore ├── su │ ├── plot_allshots.sh │ └── plot_comp.sh ├── taper │ └── .gitignore ├── trace_kill │ └── trace_kill.dat ├── visu │ ├── FWI_marmousi.ipynb │ ├── Misfit_step_length_evolution.ipynb │ ├── Plot FWI's results profiles.ipynb │ ├── Plot_model_PSV.ipynb │ ├── Plot_model_SH.ipynb │ ├── Plot_seis.ipynb │ ├── Plot_seis.m │ ├── RTM_marmousi.ipynb │ ├── cmap_cm.pkl │ ├── segymat │ │ ├── GetSegyHeaderBasics.m │ │ ├── GetSegyTraceData.m │ │ ├── GetSegyTraceHeader.m │ │ ├── ReadSu.m │ │ └── SegymatVerbose.m │ └── snap_marmousi_div_rot.ipynb └── wavelet │ └── .gitignore ├── pyapi_demo.ipynb ├── pyapi_denise.py └── src ├── AC ├── FD_AC.c ├── FWI_AC.c ├── RTM_AC.c ├── RTM_AC_out.c ├── RTM_AC_out_shot.c ├── ac.c ├── alloc_AC.c ├── alloc_fwiAC.c ├── alloc_matAC.c ├── ass_gradAC.c ├── calc_mat_change_test_AC.c ├── checkfd_acoustic.c ├── dealloc_AC.c ├── exchange_p_AC.c ├── exchange_v_AC.c ├── extract_LBFGS_AC.c ├── extract_PCG_AC.c ├── grad_obj_ac.c ├── matcopy_acoustic_AC.c ├── mem_fwiAC.c ├── model_freq_out_AC.c ├── model_it_out_AC.c ├── obj_ac.c ├── physics_AC.c ├── precond_AC.c ├── psource_AC.c ├── readmod_AC.c ├── seismo_AC.c ├── snap_AC.c ├── step_length_est_ac.c ├── stf_ac.c ├── store_LBFGS_AC.c ├── store_PCG_AC.c ├── surface_acoustic_PML_AC.c ├── update_s_acoustic_PML_AC.c ├── update_v_PML_AC.c └── zero_denise_acoustic_AC.c ├── LBFGS.c ├── LU_decomp.c ├── Makefile ├── PCG.c ├── PML_pro.c ├── PSV ├── FD_PSV.c ├── FWI_PSV.c ├── RTM_PSV.c ├── RTM_PSV_out.c ├── RTM_PSV_out_shot.c ├── alloc_PSV.c ├── alloc_fwiPSV.c ├── alloc_matPSV.c ├── alloc_mpiPSV.c ├── alloc_seisPSV.c ├── alloc_seisPSVfull.c ├── alloc_seisPSVfwi.c ├── ass_gradPSV.c ├── calc_mat_change_test_PSV.c ├── calc_res_PSV.c ├── dealloc_PSV.c ├── exchange_s_PSV.c ├── exchange_v_PSV.c ├── extract_LBFGS_PSV.c ├── extract_PCG_PSV.c ├── grad_obj_psv.c ├── matcopy_PSV.c ├── matcopy_elastic_PSV.c ├── mem_PSV.c ├── mem_fwiPSV.c ├── model_freq_out_PSV.c ├── model_it_out_PSV.c ├── obj_psv.c ├── outseis_PSVfor.c ├── outseis_PSVres.c ├── physics_PSV.c ├── precond_PSV.c ├── prepare_update_s_visc_PSV.c ├── psv.c ├── readmod_elastic_PSV.c ├── readmod_visc_PSV.c ├── step_length_est_psv.c ├── stf_psv.c ├── store_LBFGS_PSV.c ├── store_PCG_PSV.c ├── surface_elastic_PML_PSV.c ├── surface_visc_PML_PSV.c ├── update_s_elastic_PML_PSV.c ├── update_s_visc_PML_PSV.c ├── update_v_PML_PSV.c ├── zero_denise_elast_PSV.c └── zero_denise_visc_PSV.c ├── SH ├── FD_SH.c ├── FD_grad_SH.c ├── FWI_SH.c ├── FWI_SH_visc.c ├── PML_pro_SH.c ├── RTM_SH_out_shot.c ├── alloc_SH.c ├── alloc_fwiSH.c ├── alloc_matSH.c ├── alloc_seisSH.c ├── alloc_seisSHfull.c ├── alloc_seisSHfwi.c ├── apply_inv_hessSH.c ├── ass_gradSH.c ├── ass_gradSH_visc.c ├── av_mu_SH.c ├── calc_mat_change_test_SH.c ├── calc_mat_change_test_SH_visc.c ├── calc_res_SH.c ├── checkfd_elast_SH.c ├── checkfd_visc_SH.c ├── dealloc_SH.c ├── debug │ ├── FWI_SH.c │ ├── ass_gradSH.c │ ├── calc_mat_change_test_SH.c │ ├── extract_PCG_SH.c │ ├── grad_obj_sh.c │ ├── sh.c │ ├── step_length_est_sh.c │ ├── store_PCG_SH.c │ ├── update_s_visc_PML_SH.c │ └── update_v_PML_SH.c ├── eprecond_SH.c ├── exchange_s_SH.c ├── exchange_v_SH.c ├── extract_LBFGS_SH.c ├── extract_LBFGS_SH_visc.c ├── extract_PCG_SH.c ├── extract_PCG_SH_visc.c ├── grad_obj_sh.c ├── grad_obj_sh_visc.c ├── init_grad_coeff.c ├── inv_rho_SH.c ├── matcopy_SH.c ├── matcopy_elastic_SH.c ├── mem_SH.c ├── model_freq_out_SH.c ├── model_freq_out_SH_visc.c ├── model_it_out_SH.c ├── model_it_out_SH_visc.c ├── obj_sh.c ├── outseis_SHfor.c ├── outseis_SHres.c ├── physics_SH.c ├── precond_SH.c ├── prepare_update_s_visc_SH.c ├── readmod_elastic_SH.c ├── readmod_visc_SH.c ├── saveseis_glob_SH.c ├── sh.c ├── sh_visc.c ├── step_length_est_sh.c ├── stf_sh.c ├── store_LBFGS_SH.c ├── store_LBFGS_SH_visc.c ├── store_PCG_SH.c ├── store_PCG_SH_visc.c ├── store_pseudo_hess_SH.c ├── update_s_elastic_PML_SH.c ├── update_s_visc_PML_SH.c ├── update_v_PML_SH.c ├── zero_denise_elast_SH.c └── zero_denise_visc_SH.c ├── TTI ├── FD_TTI.c ├── RTM_TTI.c ├── TTI.c ├── alloc_matTTI.c ├── checkfd_ssg_TTI.c ├── grad_obj_TTI.c ├── physics_TTI.c ├── readmod_elastic_TTI.c ├── rot_el_tensor_TTI.c └── update_s_elastic_PML_TTI.c ├── VTI ├── FD_VTI.c ├── RTM_VTI.c ├── VTI.c ├── alloc_matVTI.c ├── ass_gradVTI.c ├── checkfd_ssg_VTI.c ├── grad_obj_VTI.c ├── matcopy_elastic_VTI.c ├── physics_VTI.c ├── readmod_elastic_VTI.c ├── seismo_ssg_VTI.c ├── snap_ssg_VTI.c └── update_s_elastic_PML_VTI.c ├── absorb.c ├── apply_tdfilt.c ├── av_harm.c ├── av_mue.c ├── av_rho.c ├── av_tau.c ├── calc_energy.c ├── calc_envelope.c ├── calc_hilbert.c ├── calc_misfit.c ├── calc_opt_step.c ├── calc_res.c ├── calc_res_grav.c ├── catseis.c ├── check_mode_phys.c ├── checkfd_ssg_elastic.c ├── checkfd_ssg_visc.c ├── comm_ini.c ├── conv_FD.c ├── copy_mat.c ├── count_src.c ├── denise.c ├── descent.c ├── dotp.c ├── eprecond.c ├── eprecond1.c ├── extend_mod.c ├── gauss_filt.c ├── gauss_filt_var.c ├── grav_grad.c ├── grav_mod.c ├── hackathon_build_history.txt ├── holbergcoeff.c ├── householder.c ├── info.c ├── init_grad.c ├── initproc.c ├── inseis.c ├── interpol.c ├── mat_inv_3x3.c ├── median2d.c ├── median_model.c ├── mergemod.c ├── models ├── 1D_start.c ├── FLnodes_elastic.c ├── FLnodes_visc.c ├── TOAST_bench_mod1_DEN_visc.c ├── check.c ├── check_start.c ├── gewoehnlich.c ├── hh.c ├── hh_el.c ├── hh_rsg_dip.c ├── layer.c ├── model.c ├── model2.c ├── model2_start.c ├── model_P02_visc.c ├── model_P20.c ├── model_P20_visc.c ├── model_P20_visc_grad.c ├── model_acoustic.c ├── model_ainos.c ├── model_ainos_visc.c ├── model_grad.c ├── model_grad_visc.c ├── model_plexiglas_visc.c ├── waveform_crase.c ├── waveform_crase_simple.c ├── waveform_crase_simple_start.c ├── waveform_crase_simple_start_smooth.c ├── waveform_start.c ├── waveform_start_mu.c ├── waveform_start_mu_test.c ├── waveform_start_simple.c ├── zinc_tti.c └── zinc_vti.c ├── msource.c ├── norm.c ├── note.c ├── output_source_signal.c ├── outseis.c ├── outseis_glob.c ├── outseis_vector.c ├── psource.c ├── rd_sour.c ├── read_back_density.c ├── read_density_glob.c ├── read_grav_pos.c ├── read_par.c ├── read_par_inv.c ├── readdsk.c ├── receiver.c ├── saveseis.c ├── saveseis_glob.c ├── scale_grad.c ├── seismo_ssg.c ├── smooth2.c ├── smooth_grad.c ├── smooth_model.c ├── snap_ssg.c ├── snapmerge ├── merge.c └── snapmerge.c ├── solvelin.c ├── sources.c ├── spat_agc.c ├── spat_filt.c ├── splitrec.c ├── splitsrc.c ├── splitsrc_back.c ├── stalta.c ├── stf.c ├── taper.c ├── taper_grad.c ├── taper_grad_shot.c ├── time_window.c ├── time_window_stf.c ├── timedomain_filt.c ├── timedomain_filt_vector.c ├── util.c ├── wavelet.c ├── wavelet_stf.c ├── wavelet_su.c ├── wavenumber.c ├── window_cos.c ├── 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