├── LICENSE ├── README.md ├── StabilityOracle ├── augment │ ├── __init__.py │ └── permutation.py ├── figures │ ├── plot_af.py │ ├── plot_cdna_c28.py │ ├── plot_compare_permuation.py │ ├── plot_compare_predddg_precision.py │ ├── plot_compare_pretrain.py │ ├── plot_ddg_distribution.py │ ├── plot_filter.py │ ├── plot_muteverything.py │ ├── plot_onehot.py │ ├── plot_pearson.py │ ├── plot_so.py │ ├── summary_pearson.py │ ├── summary_so.py │ ├── t2837_feat.pkl │ ├── t2837_tsne_viz.py │ ├── tsne_viz.py │ └── uniq_residue.pkl └── model │ ├── __init__.py │ ├── blocks.py │ ├── dataloader.py │ ├── model.py │ ├── pipeline.py │ └── post_process.py ├── data ├── datasets │ ├── C2878.csv │ ├── T2837.csv │ └── cdna117K.csv └── predictions │ └── SO │ ├── S-Sym.csv │ ├── S-Sym_r.csv │ ├── S669.csv │ ├── S669_r.csv │ ├── T2837.csv │ ├── T2837_r.csv │ ├── T2837_tp.csv │ ├── T2837_tp_r.csv │ ├── fireprotdb.csv │ ├── fireprotdb_r.csv │ ├── myoglobin.csv │ ├── myoglobin_r.csv │ ├── p53.csv │ └── p53_r.csv ├── 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