├── .gitignore ├── README.md ├── dipy ├── 001-dipy-reconstruction.ipynb ├── 002-cross-validation.ipynb ├── 003-dipy-tracking.ipynb ├── 004-quickbundles.ipynb └── 005-linear-fascicle-evaluation.ipynb ├── index.ipynb ├── intro ├── 001-python.ipynb ├── 002-python-full.ipynb ├── 003-object-oriented-python.ipynb ├── circle.py ├── test_circle.py └── testing.md ├── neuroimaging ├── 000-notebooks.ipynb ├── 001-arrays.ipynb ├── 002-spatial-transformations.ipynb ├── 003-plots.ipynb ├── 004-calculations.ipynb ├── 005-interactions.ipynb ├── data │ ├── run1.nii.gz │ ├── someones_anatomy.nii.gz │ └── someones_epi.nii.gz └── images │ ├── array.png │ ├── array.svg │ ├── fourier.png │ ├── illustrating_affine.png │ └── localizer.png └── requirements.txt /.gitignore: -------------------------------------------------------------------------------- 1 | .ipynb_checkpoints 2 | -------------------------------------------------------------------------------- /README.md: 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