├── .github ├── ISSUE_TEMPLATE.md └── PULL_REQUEST_TEMPLATE.md ├── .gitignore ├── 01-file-organization-instructors.md ├── 02-file-naming-instructors.md ├── AUTHORS ├── CITATION ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE.md ├── Makefile ├── README.md ├── _config.yml ├── _episodes ├── .gitkeep ├── 01-file-naming.md └── 02-file-organization.md ├── _episodes_rmd ├── .gitkeep ├── 01-file-naming.Rmd ├── 02-file-organization.Rmd └── data │ └── .gitkeep ├── _extras ├── .gitkeep ├── about.md ├── discuss.md ├── figures.md └── guide.md ├── _includes ├── all_figures.html ├── all_keypoints.html ├── carpentries.html ├── dc │ ├── intro.html │ ├── schedule.html │ ├── syllabus.html │ └── who.html ├── episode_break.html ├── episode_keypoints.html ├── episode_navbar.html ├── episode_overview.html ├── episode_title.html ├── favicons.html ├── javascript.html ├── lc │ ├── intro.html │ ├── schedule.html │ ├── syllabus.html │ └── who.html ├── lesson_footer.html ├── links.md ├── main_title.html ├── navbar.html ├── sc │ ├── intro.html │ ├── schedule.html │ ├── syllabus.html │ └── who.html ├── syllabus.html ├── workshop_ad.html └── workshop_footer.html ├── _layouts ├── base.html ├── break.html ├── episode.html ├── lesson.html ├── page.html ├── reference.html └── workshop.html ├── aio.md ├── assets ├── css │ ├── bootstrap-theme.css │ ├── bootstrap-theme.css.map │ ├── bootstrap.css │ ├── bootstrap.css.map │ ├── lesson.scss │ └── syntax.css ├── favicons │ ├── cp │ │ ├── apple-touch-icon-114x114.png │ │ ├── apple-touch-icon-120x120.png │ │ ├── apple-touch-icon-144x144.png │ │ ├── apple-touch-icon-152x152.png │ │ ├── apple-touch-icon-57x57.png │ │ ├── apple-touch-icon-60x60.png │ │ ├── apple-touch-icon-72x72.png │ │ ├── apple-touch-icon-76x76.png │ │ ├── favicon-128.png │ │ ├── favicon-16x16.png │ │ ├── favicon-196x196.png │ │ ├── favicon-32x32.png │ │ ├── favicon-96x96.png │ │ ├── favicon.ico │ │ ├── mstile-144x144.png │ │ ├── mstile-150x150.png │ │ ├── mstile-310x150.png │ │ ├── mstile-310x310.png │ │ └── mstile-70x70.png │ ├── dc │ │ ├── apple-touch-icon-114x114.png │ │ ├── apple-touch-icon-120x120.png │ │ ├── apple-touch-icon-144x144.png │ │ ├── apple-touch-icon-152x152.png │ │ ├── apple-touch-icon-57x57.png │ │ ├── apple-touch-icon-60x60.png │ │ ├── apple-touch-icon-72x72.png │ │ ├── apple-touch-icon-76x76.png │ │ ├── favicon-128.png │ │ ├── favicon-16x16.png │ │ ├── favicon-196x196.png │ │ ├── favicon-32x32.png │ │ ├── favicon-96x96.png │ │ ├── favicon.ico │ │ ├── mstile-144x144.png │ │ ├── mstile-150x150.png │ │ ├── mstile-310x150.png │ │ ├── mstile-310x310.png │ │ └── mstile-70x70.png │ ├── lc │ │ ├── apple-touch-icon-114x114.png │ │ ├── apple-touch-icon-120x120.png │ │ ├── apple-touch-icon-144x144.png │ │ ├── apple-touch-icon-152x152.png │ │ ├── apple-touch-icon-57x57.png │ │ ├── apple-touch-icon-60x60.png │ │ ├── apple-touch-icon-72x72.png │ │ ├── apple-touch-icon-76x76.png │ │ ├── favicon-128.png │ │ ├── favicon-16x16.png │ │ ├── favicon-196x196.png │ │ ├── favicon-32x32.png │ │ ├── favicon-96x96.png │ │ ├── favicon.ico │ │ ├── mstile-144x144.png │ │ ├── mstile-150x150.png │ │ ├── mstile-310x150.png │ │ ├── mstile-310x310.png │ │ └── mstile-70x70.png │ └── swc │ │ ├── apple-touch-icon-114x114.png │ │ ├── apple-touch-icon-120x120.png │ │ ├── apple-touch-icon-144x144.png │ │ ├── apple-touch-icon-152x152.png │ │ ├── apple-touch-icon-57x57.png │ │ ├── apple-touch-icon-60x60.png │ │ ├── apple-touch-icon-72x72.png │ │ ├── apple-touch-icon-76x76.png │ │ ├── favicon-128.png │ │ ├── favicon-16x16.png │ │ ├── favicon-196x196.png │ │ ├── favicon-32x32.png │ │ ├── favicon-96x96.png │ │ ├── favicon.ico │ │ ├── mstile-144x144.png │ │ ├── mstile-150x150.png │ │ ├── mstile-310x150.png │ │ ├── mstile-310x310.png │ │ └── mstile-70x70.png ├── fonts │ ├── glyphicons-halflings-regular.eot │ ├── glyphicons-halflings-regular.svg │ ├── glyphicons-halflings-regular.ttf │ ├── glyphicons-halflings-regular.woff │ └── glyphicons-halflings-regular.woff2 ├── img │ ├── cp-logo-blue.svg │ ├── dc-icon-black.svg │ ├── dc-logo-black.svg │ ├── lc-icon-black.png │ ├── lc-icon-black.svg │ ├── lc-logo-black.png │ ├── lc-logo-black.svg │ ├── swc-icon-blue.svg │ ├── swc-logo-blue.png │ ├── swc-logo-blue.svg │ ├── swc-logo-white.png │ └── swc-logo-white.svg └── js │ ├── bootstrap.min.js │ ├── jquery.min.js │ ├── jquery.min.map │ └── lesson.js ├── bin ├── boilerplate │ ├── .travis.yml │ ├── AUTHORS │ ├── CITATION │ ├── CODE_OF_CONDUCT.md │ ├── CONTRIBUTING.md │ ├── README.md │ ├── _config.yml │ ├── _episodes │ │ └── 01-introduction.md │ ├── _extras │ │ ├── about.md │ │ ├── discuss.md │ │ ├── figures.md │ │ └── guide.md │ ├── aio.md │ ├── index.md │ ├── reference.md │ └── setup.md ├── chunk-options.R ├── generate_md_episodes.R ├── knit_lessons.sh ├── lesson_check.py ├── lesson_initialize.py ├── markdown_ast.rb ├── repo_check.py ├── test_lesson_check.py ├── util.py └── workshop_check.py ├── code └── .gitkeep ├── data └── .gitkeep ├── fig ├── .gitkeep ├── awesome_names.png ├── beer_messy_tidy.png ├── cheers.png ├── chronological_order.png ├── files_messy_tidy.png ├── human_readable_not_options.png ├── iso_8601.tiff ├── logical_order.png ├── map_mmddyyy.tiff ├── plasmid_delimiters.png ├── plasmid_delimiters_code.png ├── plasmid_glob.png ├── plasmid_mac_os_search.png ├── plasmid_names.png ├── plasmid_regex.png ├── sample_analysis.png ├── sample_expository.png ├── sample_figures.png ├── sample_raw_data.png ├── sample_ready_to_analyze_data.png ├── sample_real_imperfect.png ├── sample_results.png ├── sample_scripts.png ├── slug.jpg ├── slug_filenames.png ├── workflow.png ├── workflow_data_to_results_1.png ├── workflow_data_to_results_2.png └── workflow_raw_data_to_data.png ├── files ├── .gitkeep └── file-org │ ├── README.md │ └── forensic-science │ ├── data.xlsx │ ├── data1.xlsx │ ├── data1_full.csv │ ├── draft_graph.docx │ ├── final_analyses.R │ ├── final_analyses1.R │ ├── graph.png │ ├── oceania.csv │ └── rev1_final_analysis.R ├── index.md ├── keynote ├── README.md ├── naming-slides.key └── organization-slides.key ├── organization-01-instr-notes.md ├── organization-01-lesson.md ├── reference.md ├── setup.md └── slides ├── organization-01-slides.Rmd ├── organization-01-slides.html ├── organization-02-slides.Rmd └── organization-02-slides.html /.github/ISSUE_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/.github/ISSUE_TEMPLATE.md -------------------------------------------------------------------------------- /.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/.github/PULL_REQUEST_TEMPLATE.md -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/.gitignore -------------------------------------------------------------------------------- /01-file-organization-instructors.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/01-file-organization-instructors.md -------------------------------------------------------------------------------- /02-file-naming-instructors.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/02-file-naming-instructors.md -------------------------------------------------------------------------------- /AUTHORS: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/AUTHORS -------------------------------------------------------------------------------- /CITATION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/CITATION -------------------------------------------------------------------------------- /CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/LICENSE.md -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/README.md -------------------------------------------------------------------------------- /_config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_config.yml -------------------------------------------------------------------------------- /_episodes/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /_episodes/01-file-naming.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_episodes/01-file-naming.md -------------------------------------------------------------------------------- /_episodes/02-file-organization.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_episodes/02-file-organization.md -------------------------------------------------------------------------------- /_episodes_rmd/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /_episodes_rmd/01-file-naming.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_episodes_rmd/01-file-naming.Rmd -------------------------------------------------------------------------------- /_episodes_rmd/02-file-organization.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_episodes_rmd/02-file-organization.Rmd -------------------------------------------------------------------------------- /_episodes_rmd/data/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /_extras/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /_extras/about.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_extras/about.md -------------------------------------------------------------------------------- /_extras/discuss.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_extras/discuss.md -------------------------------------------------------------------------------- /_extras/figures.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_extras/figures.md -------------------------------------------------------------------------------- /_extras/guide.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_extras/guide.md -------------------------------------------------------------------------------- /_includes/all_figures.html: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /_includes/all_keypoints.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/all_keypoints.html -------------------------------------------------------------------------------- /_includes/carpentries.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/carpentries.html -------------------------------------------------------------------------------- /_includes/dc/intro.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/dc/intro.html -------------------------------------------------------------------------------- /_includes/dc/schedule.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/dc/schedule.html -------------------------------------------------------------------------------- /_includes/dc/syllabus.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/dc/syllabus.html -------------------------------------------------------------------------------- /_includes/dc/who.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/dc/who.html -------------------------------------------------------------------------------- /_includes/episode_break.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/episode_break.html -------------------------------------------------------------------------------- /_includes/episode_keypoints.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/episode_keypoints.html -------------------------------------------------------------------------------- /_includes/episode_navbar.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/episode_navbar.html -------------------------------------------------------------------------------- /_includes/episode_overview.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/episode_overview.html -------------------------------------------------------------------------------- /_includes/episode_title.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/episode_title.html -------------------------------------------------------------------------------- /_includes/favicons.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/favicons.html -------------------------------------------------------------------------------- /_includes/javascript.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/javascript.html -------------------------------------------------------------------------------- /_includes/lc/intro.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/lc/intro.html -------------------------------------------------------------------------------- /_includes/lc/schedule.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/lc/schedule.html -------------------------------------------------------------------------------- /_includes/lc/syllabus.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/lc/syllabus.html -------------------------------------------------------------------------------- /_includes/lc/who.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/lc/who.html -------------------------------------------------------------------------------- /_includes/lesson_footer.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/lesson_footer.html -------------------------------------------------------------------------------- /_includes/links.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/links.md -------------------------------------------------------------------------------- /_includes/main_title.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/main_title.html -------------------------------------------------------------------------------- /_includes/navbar.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/navbar.html -------------------------------------------------------------------------------- /_includes/sc/intro.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/sc/intro.html -------------------------------------------------------------------------------- /_includes/sc/schedule.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/sc/schedule.html -------------------------------------------------------------------------------- /_includes/sc/syllabus.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/sc/syllabus.html -------------------------------------------------------------------------------- /_includes/sc/who.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/sc/who.html -------------------------------------------------------------------------------- /_includes/syllabus.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/syllabus.html -------------------------------------------------------------------------------- /_includes/workshop_ad.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/workshop_ad.html -------------------------------------------------------------------------------- /_includes/workshop_footer.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_includes/workshop_footer.html -------------------------------------------------------------------------------- /_layouts/base.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_layouts/base.html -------------------------------------------------------------------------------- /_layouts/break.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_layouts/break.html -------------------------------------------------------------------------------- /_layouts/episode.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_layouts/episode.html -------------------------------------------------------------------------------- /_layouts/lesson.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_layouts/lesson.html -------------------------------------------------------------------------------- /_layouts/page.html: -------------------------------------------------------------------------------- 1 | --- 2 | layout: base 3 | --- 4 | {% include main_title.html %} 5 | {{content}} 6 | -------------------------------------------------------------------------------- /_layouts/reference.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_layouts/reference.html -------------------------------------------------------------------------------- /_layouts/workshop.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/_layouts/workshop.html -------------------------------------------------------------------------------- /aio.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/aio.md -------------------------------------------------------------------------------- /assets/css/bootstrap-theme.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/css/bootstrap-theme.css -------------------------------------------------------------------------------- /assets/css/bootstrap-theme.css.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/css/bootstrap-theme.css.map -------------------------------------------------------------------------------- /assets/css/bootstrap.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/css/bootstrap.css -------------------------------------------------------------------------------- /assets/css/bootstrap.css.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/css/bootstrap.css.map -------------------------------------------------------------------------------- /assets/css/lesson.scss: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/css/lesson.scss -------------------------------------------------------------------------------- /assets/css/syntax.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/css/syntax.css -------------------------------------------------------------------------------- /assets/favicons/cp/apple-touch-icon-114x114.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/apple-touch-icon-114x114.png -------------------------------------------------------------------------------- /assets/favicons/cp/apple-touch-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/apple-touch-icon-120x120.png -------------------------------------------------------------------------------- /assets/favicons/cp/apple-touch-icon-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/apple-touch-icon-144x144.png -------------------------------------------------------------------------------- /assets/favicons/cp/apple-touch-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/apple-touch-icon-152x152.png -------------------------------------------------------------------------------- /assets/favicons/cp/apple-touch-icon-57x57.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/apple-touch-icon-57x57.png -------------------------------------------------------------------------------- /assets/favicons/cp/apple-touch-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/apple-touch-icon-60x60.png -------------------------------------------------------------------------------- /assets/favicons/cp/apple-touch-icon-72x72.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/apple-touch-icon-72x72.png -------------------------------------------------------------------------------- /assets/favicons/cp/apple-touch-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/apple-touch-icon-76x76.png -------------------------------------------------------------------------------- /assets/favicons/cp/favicon-128.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/favicon-128.png -------------------------------------------------------------------------------- /assets/favicons/cp/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/favicon-16x16.png -------------------------------------------------------------------------------- /assets/favicons/cp/favicon-196x196.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/favicon-196x196.png -------------------------------------------------------------------------------- /assets/favicons/cp/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/favicon-32x32.png -------------------------------------------------------------------------------- /assets/favicons/cp/favicon-96x96.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/favicon-96x96.png -------------------------------------------------------------------------------- /assets/favicons/cp/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/favicon.ico -------------------------------------------------------------------------------- /assets/favicons/cp/mstile-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/mstile-144x144.png -------------------------------------------------------------------------------- /assets/favicons/cp/mstile-150x150.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/mstile-150x150.png -------------------------------------------------------------------------------- /assets/favicons/cp/mstile-310x150.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/mstile-310x150.png -------------------------------------------------------------------------------- /assets/favicons/cp/mstile-310x310.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/mstile-310x310.png -------------------------------------------------------------------------------- /assets/favicons/cp/mstile-70x70.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/cp/mstile-70x70.png -------------------------------------------------------------------------------- /assets/favicons/dc/apple-touch-icon-114x114.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/apple-touch-icon-114x114.png -------------------------------------------------------------------------------- /assets/favicons/dc/apple-touch-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/apple-touch-icon-120x120.png -------------------------------------------------------------------------------- /assets/favicons/dc/apple-touch-icon-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/apple-touch-icon-144x144.png -------------------------------------------------------------------------------- /assets/favicons/dc/apple-touch-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/apple-touch-icon-152x152.png -------------------------------------------------------------------------------- /assets/favicons/dc/apple-touch-icon-57x57.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/apple-touch-icon-57x57.png -------------------------------------------------------------------------------- /assets/favicons/dc/apple-touch-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/apple-touch-icon-60x60.png -------------------------------------------------------------------------------- /assets/favicons/dc/apple-touch-icon-72x72.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/apple-touch-icon-72x72.png -------------------------------------------------------------------------------- /assets/favicons/dc/apple-touch-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/apple-touch-icon-76x76.png -------------------------------------------------------------------------------- /assets/favicons/dc/favicon-128.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/favicon-128.png -------------------------------------------------------------------------------- /assets/favicons/dc/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/favicon-16x16.png -------------------------------------------------------------------------------- /assets/favicons/dc/favicon-196x196.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/favicon-196x196.png -------------------------------------------------------------------------------- /assets/favicons/dc/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/favicon-32x32.png -------------------------------------------------------------------------------- /assets/favicons/dc/favicon-96x96.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/favicon-96x96.png -------------------------------------------------------------------------------- /assets/favicons/dc/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/favicon.ico -------------------------------------------------------------------------------- /assets/favicons/dc/mstile-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/mstile-144x144.png -------------------------------------------------------------------------------- /assets/favicons/dc/mstile-150x150.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/mstile-150x150.png -------------------------------------------------------------------------------- /assets/favicons/dc/mstile-310x150.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/mstile-310x150.png -------------------------------------------------------------------------------- /assets/favicons/dc/mstile-310x310.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/mstile-310x310.png -------------------------------------------------------------------------------- /assets/favicons/dc/mstile-70x70.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/dc/mstile-70x70.png -------------------------------------------------------------------------------- /assets/favicons/lc/apple-touch-icon-114x114.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/apple-touch-icon-114x114.png -------------------------------------------------------------------------------- /assets/favicons/lc/apple-touch-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/apple-touch-icon-120x120.png -------------------------------------------------------------------------------- /assets/favicons/lc/apple-touch-icon-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/apple-touch-icon-144x144.png -------------------------------------------------------------------------------- /assets/favicons/lc/apple-touch-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/apple-touch-icon-152x152.png -------------------------------------------------------------------------------- /assets/favicons/lc/apple-touch-icon-57x57.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/apple-touch-icon-57x57.png -------------------------------------------------------------------------------- /assets/favicons/lc/apple-touch-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/apple-touch-icon-60x60.png -------------------------------------------------------------------------------- /assets/favicons/lc/apple-touch-icon-72x72.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/apple-touch-icon-72x72.png -------------------------------------------------------------------------------- /assets/favicons/lc/apple-touch-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/apple-touch-icon-76x76.png -------------------------------------------------------------------------------- /assets/favicons/lc/favicon-128.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/favicon-128.png -------------------------------------------------------------------------------- /assets/favicons/lc/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/favicon-16x16.png -------------------------------------------------------------------------------- /assets/favicons/lc/favicon-196x196.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/favicon-196x196.png -------------------------------------------------------------------------------- /assets/favicons/lc/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/favicon-32x32.png -------------------------------------------------------------------------------- /assets/favicons/lc/favicon-96x96.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/favicon-96x96.png -------------------------------------------------------------------------------- /assets/favicons/lc/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/favicon.ico -------------------------------------------------------------------------------- /assets/favicons/lc/mstile-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/mstile-144x144.png -------------------------------------------------------------------------------- /assets/favicons/lc/mstile-150x150.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/mstile-150x150.png -------------------------------------------------------------------------------- /assets/favicons/lc/mstile-310x150.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/mstile-310x150.png -------------------------------------------------------------------------------- /assets/favicons/lc/mstile-310x310.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/mstile-310x310.png -------------------------------------------------------------------------------- /assets/favicons/lc/mstile-70x70.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/lc/mstile-70x70.png -------------------------------------------------------------------------------- /assets/favicons/swc/apple-touch-icon-114x114.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/apple-touch-icon-114x114.png -------------------------------------------------------------------------------- /assets/favicons/swc/apple-touch-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/apple-touch-icon-120x120.png -------------------------------------------------------------------------------- /assets/favicons/swc/apple-touch-icon-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/apple-touch-icon-144x144.png -------------------------------------------------------------------------------- /assets/favicons/swc/apple-touch-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/apple-touch-icon-152x152.png -------------------------------------------------------------------------------- /assets/favicons/swc/apple-touch-icon-57x57.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/apple-touch-icon-57x57.png -------------------------------------------------------------------------------- /assets/favicons/swc/apple-touch-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/apple-touch-icon-60x60.png -------------------------------------------------------------------------------- /assets/favicons/swc/apple-touch-icon-72x72.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/apple-touch-icon-72x72.png -------------------------------------------------------------------------------- /assets/favicons/swc/apple-touch-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/apple-touch-icon-76x76.png -------------------------------------------------------------------------------- /assets/favicons/swc/favicon-128.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/favicon-128.png -------------------------------------------------------------------------------- /assets/favicons/swc/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/favicon-16x16.png -------------------------------------------------------------------------------- /assets/favicons/swc/favicon-196x196.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/favicon-196x196.png -------------------------------------------------------------------------------- /assets/favicons/swc/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/favicon-32x32.png -------------------------------------------------------------------------------- /assets/favicons/swc/favicon-96x96.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/favicon-96x96.png -------------------------------------------------------------------------------- /assets/favicons/swc/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/favicon.ico -------------------------------------------------------------------------------- /assets/favicons/swc/mstile-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/mstile-144x144.png -------------------------------------------------------------------------------- /assets/favicons/swc/mstile-150x150.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/mstile-150x150.png -------------------------------------------------------------------------------- /assets/favicons/swc/mstile-310x150.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/mstile-310x150.png -------------------------------------------------------------------------------- /assets/favicons/swc/mstile-310x310.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/mstile-310x310.png -------------------------------------------------------------------------------- /assets/favicons/swc/mstile-70x70.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/favicons/swc/mstile-70x70.png -------------------------------------------------------------------------------- /assets/fonts/glyphicons-halflings-regular.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/fonts/glyphicons-halflings-regular.eot -------------------------------------------------------------------------------- /assets/fonts/glyphicons-halflings-regular.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/fonts/glyphicons-halflings-regular.svg -------------------------------------------------------------------------------- /assets/fonts/glyphicons-halflings-regular.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/fonts/glyphicons-halflings-regular.ttf -------------------------------------------------------------------------------- /assets/fonts/glyphicons-halflings-regular.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/fonts/glyphicons-halflings-regular.woff -------------------------------------------------------------------------------- /assets/fonts/glyphicons-halflings-regular.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/fonts/glyphicons-halflings-regular.woff2 -------------------------------------------------------------------------------- /assets/img/cp-logo-blue.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/img/cp-logo-blue.svg -------------------------------------------------------------------------------- /assets/img/dc-icon-black.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/img/dc-icon-black.svg -------------------------------------------------------------------------------- /assets/img/dc-logo-black.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/img/dc-logo-black.svg -------------------------------------------------------------------------------- /assets/img/lc-icon-black.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/img/lc-icon-black.png -------------------------------------------------------------------------------- /assets/img/lc-icon-black.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/img/lc-icon-black.svg -------------------------------------------------------------------------------- /assets/img/lc-logo-black.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/img/lc-logo-black.png -------------------------------------------------------------------------------- /assets/img/lc-logo-black.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/img/lc-logo-black.svg -------------------------------------------------------------------------------- /assets/img/swc-icon-blue.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/img/swc-icon-blue.svg -------------------------------------------------------------------------------- /assets/img/swc-logo-blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/img/swc-logo-blue.png -------------------------------------------------------------------------------- /assets/img/swc-logo-blue.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/img/swc-logo-blue.svg -------------------------------------------------------------------------------- /assets/img/swc-logo-white.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/img/swc-logo-white.png -------------------------------------------------------------------------------- /assets/img/swc-logo-white.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/img/swc-logo-white.svg -------------------------------------------------------------------------------- /assets/js/bootstrap.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/js/bootstrap.min.js -------------------------------------------------------------------------------- /assets/js/jquery.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/js/jquery.min.js -------------------------------------------------------------------------------- /assets/js/jquery.min.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/js/jquery.min.map -------------------------------------------------------------------------------- /assets/js/lesson.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/assets/js/lesson.js -------------------------------------------------------------------------------- /bin/boilerplate/.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/boilerplate/.travis.yml -------------------------------------------------------------------------------- /bin/boilerplate/AUTHORS: -------------------------------------------------------------------------------- 1 | FIXME: list authors' names and email addresses. -------------------------------------------------------------------------------- /bin/boilerplate/CITATION: -------------------------------------------------------------------------------- 1 | FIXME: describe how to cite this lesson. -------------------------------------------------------------------------------- /bin/boilerplate/CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/boilerplate/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /bin/boilerplate/CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/boilerplate/CONTRIBUTING.md -------------------------------------------------------------------------------- /bin/boilerplate/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/boilerplate/README.md -------------------------------------------------------------------------------- /bin/boilerplate/_config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/boilerplate/_config.yml -------------------------------------------------------------------------------- /bin/boilerplate/_episodes/01-introduction.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/boilerplate/_episodes/01-introduction.md -------------------------------------------------------------------------------- /bin/boilerplate/_extras/about.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/boilerplate/_extras/about.md -------------------------------------------------------------------------------- /bin/boilerplate/_extras/discuss.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: Discussion 3 | --- 4 | FIXME 5 | 6 | {% include links.md %} 7 | -------------------------------------------------------------------------------- /bin/boilerplate/_extras/figures.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/boilerplate/_extras/figures.md -------------------------------------------------------------------------------- /bin/boilerplate/_extras/guide.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Instructor Notes" 3 | --- 4 | FIXME 5 | 6 | {% include links.md %} 7 | -------------------------------------------------------------------------------- /bin/boilerplate/aio.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/boilerplate/aio.md -------------------------------------------------------------------------------- /bin/boilerplate/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/boilerplate/index.md -------------------------------------------------------------------------------- /bin/boilerplate/reference.md: -------------------------------------------------------------------------------- 1 | --- 2 | layout: reference 3 | --- 4 | 5 | ## Glossary 6 | 7 | FIXME 8 | 9 | {% include links.md %} 10 | -------------------------------------------------------------------------------- /bin/boilerplate/setup.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: Setup 3 | --- 4 | FIXME 5 | 6 | 7 | {% include links.md %} 8 | -------------------------------------------------------------------------------- /bin/chunk-options.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/chunk-options.R -------------------------------------------------------------------------------- /bin/generate_md_episodes.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/generate_md_episodes.R -------------------------------------------------------------------------------- /bin/knit_lessons.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/knit_lessons.sh -------------------------------------------------------------------------------- /bin/lesson_check.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/lesson_check.py -------------------------------------------------------------------------------- /bin/lesson_initialize.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/lesson_initialize.py -------------------------------------------------------------------------------- /bin/markdown_ast.rb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/markdown_ast.rb -------------------------------------------------------------------------------- /bin/repo_check.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/repo_check.py -------------------------------------------------------------------------------- /bin/test_lesson_check.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/test_lesson_check.py -------------------------------------------------------------------------------- /bin/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/util.py -------------------------------------------------------------------------------- /bin/workshop_check.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/bin/workshop_check.py -------------------------------------------------------------------------------- /code/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /data/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /fig/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /fig/awesome_names.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/awesome_names.png -------------------------------------------------------------------------------- /fig/beer_messy_tidy.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/beer_messy_tidy.png -------------------------------------------------------------------------------- /fig/cheers.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/cheers.png -------------------------------------------------------------------------------- /fig/chronological_order.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/chronological_order.png -------------------------------------------------------------------------------- /fig/files_messy_tidy.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/files_messy_tidy.png -------------------------------------------------------------------------------- /fig/human_readable_not_options.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/human_readable_not_options.png -------------------------------------------------------------------------------- /fig/iso_8601.tiff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/iso_8601.tiff -------------------------------------------------------------------------------- /fig/logical_order.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/logical_order.png -------------------------------------------------------------------------------- /fig/map_mmddyyy.tiff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/map_mmddyyy.tiff -------------------------------------------------------------------------------- /fig/plasmid_delimiters.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/plasmid_delimiters.png -------------------------------------------------------------------------------- /fig/plasmid_delimiters_code.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/plasmid_delimiters_code.png -------------------------------------------------------------------------------- /fig/plasmid_glob.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/plasmid_glob.png -------------------------------------------------------------------------------- /fig/plasmid_mac_os_search.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/plasmid_mac_os_search.png -------------------------------------------------------------------------------- /fig/plasmid_names.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/plasmid_names.png -------------------------------------------------------------------------------- /fig/plasmid_regex.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/plasmid_regex.png -------------------------------------------------------------------------------- /fig/sample_analysis.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/sample_analysis.png -------------------------------------------------------------------------------- /fig/sample_expository.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/sample_expository.png -------------------------------------------------------------------------------- /fig/sample_figures.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/sample_figures.png -------------------------------------------------------------------------------- /fig/sample_raw_data.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/sample_raw_data.png -------------------------------------------------------------------------------- /fig/sample_ready_to_analyze_data.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/sample_ready_to_analyze_data.png -------------------------------------------------------------------------------- /fig/sample_real_imperfect.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/sample_real_imperfect.png -------------------------------------------------------------------------------- /fig/sample_results.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/sample_results.png -------------------------------------------------------------------------------- /fig/sample_scripts.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/sample_scripts.png -------------------------------------------------------------------------------- /fig/slug.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/slug.jpg -------------------------------------------------------------------------------- /fig/slug_filenames.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/slug_filenames.png -------------------------------------------------------------------------------- /fig/workflow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/workflow.png -------------------------------------------------------------------------------- /fig/workflow_data_to_results_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/workflow_data_to_results_1.png -------------------------------------------------------------------------------- /fig/workflow_data_to_results_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/workflow_data_to_results_2.png -------------------------------------------------------------------------------- /fig/workflow_raw_data_to_data.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/fig/workflow_raw_data_to_data.png -------------------------------------------------------------------------------- /files/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /files/file-org/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/files/file-org/README.md -------------------------------------------------------------------------------- /files/file-org/forensic-science/data.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/files/file-org/forensic-science/data.xlsx -------------------------------------------------------------------------------- /files/file-org/forensic-science/data1.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/files/file-org/forensic-science/data1.xlsx -------------------------------------------------------------------------------- /files/file-org/forensic-science/data1_full.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/files/file-org/forensic-science/data1_full.csv -------------------------------------------------------------------------------- /files/file-org/forensic-science/draft_graph.docx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/files/file-org/forensic-science/draft_graph.docx -------------------------------------------------------------------------------- /files/file-org/forensic-science/final_analyses.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/files/file-org/forensic-science/final_analyses.R -------------------------------------------------------------------------------- /files/file-org/forensic-science/final_analyses1.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/files/file-org/forensic-science/final_analyses1.R -------------------------------------------------------------------------------- /files/file-org/forensic-science/graph.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/files/file-org/forensic-science/graph.png -------------------------------------------------------------------------------- /files/file-org/forensic-science/oceania.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/files/file-org/forensic-science/oceania.csv -------------------------------------------------------------------------------- /files/file-org/forensic-science/rev1_final_analysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/files/file-org/forensic-science/rev1_final_analysis.R -------------------------------------------------------------------------------- /index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/index.md -------------------------------------------------------------------------------- /keynote/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/keynote/README.md -------------------------------------------------------------------------------- /keynote/naming-slides.key: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/keynote/naming-slides.key -------------------------------------------------------------------------------- /keynote/organization-slides.key: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/keynote/organization-slides.key -------------------------------------------------------------------------------- /organization-01-instr-notes.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/organization-01-instr-notes.md -------------------------------------------------------------------------------- /organization-01-lesson.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/organization-01-lesson.md -------------------------------------------------------------------------------- /reference.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/reference.md -------------------------------------------------------------------------------- /setup.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/setup.md -------------------------------------------------------------------------------- /slides/organization-01-slides.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/slides/organization-01-slides.Rmd -------------------------------------------------------------------------------- /slides/organization-01-slides.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/slides/organization-01-slides.html -------------------------------------------------------------------------------- /slides/organization-02-slides.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/slides/organization-02-slides.Rmd -------------------------------------------------------------------------------- /slides/organization-02-slides.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/datacarpentry/rr-organization1/HEAD/slides/organization-02-slides.html --------------------------------------------------------------------------------