├── .gitignore ├── .gitmodules ├── .hgignore ├── Makefile ├── README.md ├── TODO ├── algebra ├── algebra.mk ├── glz.h ├── ilaenv.f ├── irls.cc ├── irls.h ├── lapack.cc ├── lapack.h ├── lapack_detect.cc ├── least_squares.cc ├── least_squares.h ├── matrix_ops.cc ├── matrix_ops.h ├── multi_array_utils.h ├── svd.cc ├── svd.h └── testing │ ├── algebra_testing.mk │ ├── least_squares_test.cc │ └── remove_dependent_test.cc ├── arch ├── arch.h ├── arch.mk ├── atomic_init.h ├── atomic_ops.h ├── backtrace.cc ├── backtrace.h ├── bit_range_ops.h ├── bitops.h ├── cache.h ├── cal.cc ├── cmp_xchg.h ├── cpu_info.cc ├── cpu_info.h ├── cpuid.cc ├── cpuid.h ├── cuda.cc ├── cuda.h ├── cuda.mk ├── cuda │ ├── atomic.h │ ├── device_data.h │ ├── intrinsics.h │ └── single_sm_matrix_vector_multiply.h ├── demangle.cc ├── demangle.h ├── detect_python.sh ├── environment_static.cc ├── exception.cc ├── exception.h ├── exception_handler.cc ├── exception_handler.h ├── exception_hook.cc ├── exception_hook.h ├── exception_internals.h ├── format.cc ├── format.h ├── fslock.cc ├── fslock.h ├── futex.h ├── gpgpu.cc ├── gpgpu.h ├── info.cc ├── info.h ├── integer.h ├── math.h ├── math_builtins.h ├── node_exception_tracing.cc ├── rt.cc ├── rt.h ├── rtti_utils.cc ├── rtti_utils.h ├── rusage.h ├── rwlock.h ├── semaphore.h ├── simd.cc ├── simd.h ├── simd_vector.cc ├── simd_vector.h ├── spinlock.h ├── sse.h ├── sse2.h ├── sse2_exp.h ├── sse2_log.h ├── sse2_math.h ├── sse2_misc.h ├── sse2_poly.h ├── testing │ ├── arch_testing.mk │ ├── atomic_ops_test.cc │ ├── backtrace_test.cc │ ├── bit_range_ops_test.cc │ ├── bitops_test.cc │ ├── cmp_xchg_test.cc │ ├── cpuid_test.cc │ ├── fslock_test.cc │ ├── futex_test.cc │ ├── info_test.cc │ ├── rtti_utils_test.cc │ ├── simd_test.cc │ ├── simd_vector_test.cc │ ├── sse2_math_test.cc │ ├── thread_specific_test.cc │ ├── tick_counter_test.cc │ └── vm_test.cc ├── thread_specific.h ├── threads.h ├── tick_counter.cc ├── tick_counter.h ├── timers.h ├── vm.cc ├── vm.h └── wakeup_fd.h ├── boosting ├── bagging_generator.cc ├── bagging_generator.h ├── binary_symmetric.cc ├── binary_symmetric.h ├── bindings │ └── python │ │ ├── py_boosting.cc │ │ ├── py_classifier.cc │ │ ├── py_feature_set.cc │ │ └── py_training_data.cc ├── bit_compressed_index.cc ├── bit_compressed_index.h ├── boolean_expression.h ├── boosted_stumps.cc ├── boosted_stumps.h ├── boosted_stumps_core.h ├── boosted_stumps_generator.cc ├── boosted_stumps_generator.h ├── boosted_stumps_impl.h ├── boosting.mk ├── boosting_core.h ├── boosting_core_parallel.h ├── boosting_generator.cc ├── boosting_generator.h ├── boosting_training.cc ├── boosting_training.h ├── buckets.cc ├── buckets.h ├── classifier.cc ├── classifier.h ├── classifier_generator.cc ├── classifier_generator.h ├── classifier_mlp.cc ├── classifier_mlp.h ├── classifier_mlp_averager.cc ├── classifier_mlp_averager.h ├── classifier_persist_impl.h ├── committee.cc ├── committee.h ├── config.h ├── config_impl.h ├── config_options.cc ├── config_options.h ├── data_aliases.cc ├── data_aliases.h ├── dataset_functions.h ├── decision_tree.cc ├── decision_tree.h ├── decision_tree_generator.cc ├── decision_tree_generator.h ├── decoded_classifier.cc ├── decoded_classifier.h ├── decoder.cc ├── decoder.h ├── dense_features.cc ├── dense_features.h ├── dual_float_accum.h ├── early_stopping_generator.cc ├── early_stopping_generator.h ├── evaluation.cc ├── evaluation.h ├── feature.cc ├── feature.h ├── feature_info.cc ├── feature_info.h ├── feature_map.h ├── feature_set.cc ├── feature_set.h ├── feature_set_filter.h ├── feature_space.cc ├── feature_space.h ├── feature_transform.cc ├── feature_transform.h ├── feature_transformer.cc ├── feature_transformer.h ├── fixed_point_accum.h ├── glz_classifier.cc ├── glz_classifier.h ├── glz_classifier_generator.cc ├── glz_classifier_generator.h ├── judy_array.h ├── judy_multi_array.h ├── judy_trie.h ├── label.cc ├── label.h ├── memusage.h ├── naive_bayes.cc ├── naive_bayes.h ├── naive_bayes_generator.cc ├── naive_bayes_generator.h ├── null_classifier.cc ├── null_classifier.h ├── null_classifier_generator.cc ├── null_classifier_generator.h ├── null_decoder.cc ├── null_decoder.h ├── null_feature_space.cc ├── null_feature_space.h ├── probabilizer.cc ├── probabilizer.h ├── registry.h ├── sparse_features.cc ├── sparse_features.h ├── split.cc ├── split.h ├── split_fwd.h ├── stump.cc ├── stump.h ├── stump_accum.h ├── stump_generator.cc ├── stump_generator.h ├── stump_predict.h ├── stump_regress.cc ├── stump_regress.h ├── stump_training.cc ├── stump_training.h ├── stump_training_bin.cc ├── stump_training_bin.h ├── stump_training_core.h ├── stump_training_cuda.cu ├── stump_training_cuda.h ├── stump_training_cuda_host.cc ├── stump_training_cuda_packed.cu ├── stump_training_multi.h ├── stump_training_parallel.h ├── testing │ ├── boosted_stump_test1.cc │ ├── boosted_stumps_testing.h │ ├── boosting_test1.cc │ ├── boosting_testing.mk │ ├── classifier_load_test.cc │ ├── dataset_nan_test.cc │ ├── dataset_test1.cc │ ├── dataset_test2.cc │ ├── decision_tree_multithreaded_test.cc │ ├── decision_tree_unlimited_depth_test.cc │ ├── decision_tree_xor_test.cc │ ├── exp_test.cc │ ├── feature_info_test.cc │ ├── feature_map_test.cc │ ├── glz_classifier_test.cc │ ├── judy_array_test.cc │ ├── judy_multi_array_test.cc │ ├── orthogonal_test.cc │ ├── probabilizer_test.cc │ ├── simd_sqrt_test.cc │ ├── sparse_feature_test.cc │ ├── split_cuda_test.cc │ ├── split_test.cc │ ├── stump_test1.cc │ ├── stump_test2.cc │ ├── stump_test3.cc │ ├── stump_test4.cc │ ├── stump_testing.h │ └── weighted_training_test.cc ├── thread_context.h ├── tools │ ├── bagging_training_tool.cc │ ├── bnb_training_tool.cc │ ├── boosting_bootstrap_tool.cc │ ├── boosting_testing_tool.cc │ ├── boosting_tool_common.cc │ ├── boosting_tool_common.h │ ├── boosting_tools.mk │ ├── boosting_training_tool.cc │ ├── classifier_tool.cc │ ├── classifier_training_tool.cc │ ├── datasets.cc │ ├── datasets.h │ ├── decision_tree_training_tool.cc │ ├── glz_training_tool.cc │ ├── naive_bayes_training_tool.cc │ └── training_data_tool.cc ├── training_data.cc ├── training_data.h ├── training_index.cc ├── training_index.h ├── training_index_entry.cc ├── training_index_entry.h ├── training_index_iterators.cc ├── training_index_iterators.h ├── training_index_iterators_impl.h ├── training_params.h ├── transform_list.cc ├── transform_list.h ├── transformed_classifier.cc ├── transformed_classifier.h ├── tree.cc ├── tree.h ├── weight_updating_generator.h ├── weighted_training.cc └── weighted_training.h ├── compiler └── compiler.h ├── db ├── compact_size_types.cc ├── compact_size_types.h ├── db.mk ├── nested_archive.cc ├── nested_archive.h ├── persistent.h ├── persistent_fwd.h ├── portable_iarchive.cc ├── portable_iarchive.h ├── portable_oarchive.cc ├── portable_oarchive.h ├── serialization_order.h └── testing │ ├── compact_size_type_test.cc │ ├── db_testing.mk │ └── serialize_reconstitute_test.cc ├── doxygen-config ├── gmsl ├── README ├── __gmsl ├── gmsl ├── gmsl-tests └── index.html ├── jml ├── jml.mk ├── judy ├── Judy.h ├── JudyL.h ├── JudyLByCount.cc ├── JudyLCascade.cc ├── JudyLCount.cc ├── JudyLCreateBranch.cc ├── JudyLDecascade.cc ├── JudyLDel.cc ├── JudyLFirst.cc ├── JudyLFreeArray.cc ├── JudyLGet.cc ├── JudyLIns.cc ├── JudyLInsArray.cc ├── JudyLInsertBranch.cc ├── JudyLMallocIF.cc ├── JudyLMemActive.cc ├── JudyLMemUsed.cc ├── JudyLNext.cc ├── JudyLNextEmpty.cc ├── JudyLPrev.cc ├── JudyLPrevEmpty.cc ├── JudyLTables.cc ├── JudyLTablesGen.cc ├── JudyMalloc.cc ├── JudyPrintJP.cc ├── JudyPrivate.h ├── JudyPrivate1L.h ├── JudyPrivateBranch.h ├── config.h ├── j__udyLGet.cc ├── judy.mk └── judy_malloc_allocator.cc ├── letters.dat.gz ├── lz4 ├── README ├── lz4.c ├── lz4.h ├── lz4.mk ├── lz4cli │ ├── COPYING │ ├── README.md │ ├── bench.c │ ├── bench.h │ ├── datagen.c │ ├── datagen.h │ ├── lz4.1 │ ├── lz4.1.md │ ├── lz4cli.c │ ├── lz4cli.mk │ ├── lz4io.c │ ├── lz4io.h │ ├── platform.h │ └── util.h ├── lz4frame.c ├── lz4frame.h ├── lz4frame_static.h ├── lz4hc.c ├── lz4hc.h ├── lz4opt.h ├── xxhash.c └── xxhash.h ├── math ├── bound.h ├── math.mk ├── metrics.h ├── round.h ├── testing │ ├── math_testing.mk │ └── round_test.cc └── xdiv.h ├── neural ├── auto_encoder.cc ├── auto_encoder.h ├── auto_encoder_stack.cc ├── auto_encoder_stack.h ├── auto_encoder_trainer.cc ├── auto_encoder_trainer.h ├── backprop_cuda.cu ├── backprop_cuda.h ├── backprop_cuda_one_example.cu ├── backprop_cuda_train_N_examples.cu ├── dense_layer.cc ├── dense_layer.h ├── dense_layer_impl.h ├── dense_shared_reverse_layer.cc ├── dense_shared_reverse_layer.h ├── dense_shared_reverse_layer_impl.h ├── discriminative_trainer.cc ├── discriminative_trainer.h ├── layer.cc ├── layer.h ├── layer_stack.cc ├── layer_stack.h ├── layer_stack_impl.h ├── loss_function.h ├── neural.mk ├── output_encoder.cc ├── output_encoder.h ├── parameters.cc ├── parameters.h ├── parameters_impl.h ├── perceptron.cc ├── perceptron.h ├── perceptron_defs.cc ├── perceptron_defs.h ├── perceptron_generator.cc ├── perceptron_generator.h ├── reconstruct_layer_adaptor.cc ├── reconstruct_layer_adaptor.h ├── reverse_layer_adaptor.cc ├── reverse_layer_adaptor.h ├── testing │ ├── backprop_cuda_test.cc │ ├── bprop_test.h │ ├── dense_layer_test.cc │ ├── discriminative_trainer_test.cc │ ├── layer_stack_test.cc │ ├── neural_testing.mk │ ├── output_encoder_test.cc │ ├── parameters_test.cc │ ├── perceptron_test.cc │ └── twoway_layer_test.cc ├── transfer_function.cc ├── transfer_function.h ├── twoway_layer.cc └── twoway_layer.h ├── python ├── classifier.i ├── classifier_training_tool.i ├── distribution.i ├── feature.i ├── feature_info.i ├── feature_set.i ├── feature_space.i ├── jml_wrap_python.cc ├── jml_wrap_python.h ├── jml_wrap_python.i ├── metainfo.py ├── metainfo.pyc ├── python.mk ├── setup.py └── training_data.i ├── src_tools ├── ident_replace.sh ├── ident_replace_all.sh └── search_source.sh ├── stats ├── auc.cc ├── auc.h ├── distribution.cc ├── distribution.h ├── distribution_ops.h ├── distribution_simd.h ├── moments.h ├── rmse.h ├── sparse_distribution.h ├── stats.mk └── testing │ ├── auc_test.cc │ ├── rmse_test.cc │ └── stats_testing.mk ├── tsne ├── __init__.py ├── notes.txt ├── testing │ ├── mnist2500_X_min.txt.gz │ ├── mnist2500_labels_min.txt.gz │ ├── tsne_python_test.py │ ├── tsne_test.cc │ └── tsne_testing.mk ├── tsne.cc ├── tsne.h ├── tsne.mk └── tsne_python.cc └── utils ├── abort.cc ├── abort.h ├── boost_fixes.h ├── check_not_nan.h ├── circular_buffer.h ├── compact_vector.h ├── configuration.cc ├── configuration.h ├── csv.cc ├── csv.h ├── enum_info.h ├── environment.cc ├── environment.h ├── exc_assert.cc ├── exc_assert.h ├── exc_check.cc ├── exc_check.h ├── exception_ptr.cc ├── exception_ptr.h ├── fast_float_parsing.h ├── fast_int_parsing.h ├── file_functions.cc ├── file_functions.h ├── filter_streams.cc ├── filter_streams.h ├── fixed_array.h ├── float_traits.h ├── floating_point.cc ├── floating_point.h ├── guard.h ├── hash.cc ├── hash.h ├── hash_map.h ├── hash_set.h ├── hash_specializations.h ├── hex_dump.cc ├── hex_dump.h ├── info.h ├── json_parsing.cc ├── json_parsing.h ├── less.h ├── lightweight_hash.h ├── lz4_filter.h ├── lzma.cc ├── lzma.h ├── map_reduce.h ├── move.h ├── multi_array_utils.h ├── pair_utils.h ├── parse_context.cc ├── parse_context.h ├── positioned_types.h ├── profile.h ├── ring_buffer.h ├── rng.cc ├── rng.h ├── set_utils.h ├── sgi_algorithm.h ├── sgi_functional.h ├── sgi_numeric.h ├── smart_ptr_utils.h ├── sorted_vector.h ├── string_functions.cc ├── string_functions.h ├── testing ├── circular_buffer_test.cc ├── compact_vector_test.cc ├── configuration_test.cc ├── csv_parsing_test.cc ├── environment_test.cc ├── fd_exhauster.h ├── filter_streams_test.cc ├── fixed_array_test.cc ├── json_parsing_test.cc ├── lightweight_hash_test.cc ├── live_counting_obj.h ├── parse_context_test.cc ├── parse_context_test_data.csv.gz ├── serialize_reconstitute_include.h 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