├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── CRAN-SUBMISSION ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── CousineauLaurencelleLambda.R ├── HyunhFeldtEpsilon.R ├── ShroutFleissICC1k.R ├── TMB1964r.R ├── WelchDegreeOfFreedom.R ├── dataFigure1.R ├── dataFigure2.R ├── dataFigure3.R ├── dataFigure4.R ├── functionsFormulas.R ├── functionsLogical.R ├── functionsPlotting_advanced.R ├── functionsPlotting_base.R ├── functionsPlotting_boxplot.R ├── functionsPlotting_circular.R ├── functionsPlotting_corset.R ├── functionsPlotting_moderate.R ├── functionsPlotting_ribbon.R ├── functionsStatistical.R ├── functionsTransformation.R ├── geom_flat_violin.R ├── geom_superberrorbar.R ├── grd.R ├── makeTransparent.R ├── runDebug.R ├── showSignificance.R ├── superb-package.R ├── superb.R ├── superbData.R ├── superbPlot.R ├── superbShiny.R ├── superbToWide.R ├── testMauchlySphericity.R └── testWinerCompoundSymmetry.R ├── README.Rmd ├── README.md ├── README_files └── figure-gfm │ ├── unnamed-chunk-10-1.png │ ├── unnamed-chunk-11-1.png │ ├── unnamed-chunk-12-1.png │ ├── unnamed-chunk-6-1.png │ ├── unnamed-chunk-7-1.png │ └── unnamed-chunk-8-1.png ├── data ├── TMB1964r.RData ├── dataFigure1.RData ├── dataFigure2.RData ├── dataFigure3.RData └── dataFigure4.RData ├── docs ├── 404.html ├── NAMESPACE ├── README_files │ └── figure-gfm │ │ ├── unnamed-chunk-10-1.png │ │ ├── unnamed-chunk-11-1.png │ │ ├── unnamed-chunk-12-1.png │ │ ├── unnamed-chunk-6-1.png │ │ ├── unnamed-chunk-7-1.png │ │ └── unnamed-chunk-8-1.png ├── apple-touch-icon-120x120.png ├── apple-touch-icon-152x152.png ├── apple-touch-icon-180x180.png ├── apple-touch-icon-60x60.png ├── apple-touch-icon-76x76.png ├── apple-touch-icon.png ├── articles │ ├── CustomizingSuperbPlots.html │ ├── CustomizingSuperbPlots_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-16-1.png │ │ │ ├── unnamed-chunk-17-1.png │ │ │ ├── unnamed-chunk-18-1.png │ │ │ ├── unnamed-chunk-19-1.png │ │ │ ├── unnamed-chunk-20-1.png │ │ │ ├── unnamed-chunk-21-1.png │ │ │ ├── unnamed-chunk-4-1.png │ │ │ ├── unnamed-chunk-5-1.png │ │ │ ├── unnamed-chunk-7-1.png │ │ │ ├── unnamed-chunk-8-1.png │ │ │ └── unnamed-chunk-9-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── TheMakingOf.html │ ├── TheMakingOf_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-13-1.png │ │ │ ├── unnamed-chunk-14-1.png │ │ │ ├── unnamed-chunk-15-1.png │ │ │ ├── unnamed-chunk-17-1.png │ │ │ ├── unnamed-chunk-18-1.png │ │ │ ├── unnamed-chunk-22-1.png │ │ │ ├── unnamed-chunk-23-1.png │ │ │ ├── unnamed-chunk-25-1.png │ │ │ ├── unnamed-chunk-3-1.png │ │ │ ├── unnamed-chunk-32-1.png │ │ │ ├── unnamed-chunk-5-1.png │ │ │ ├── unnamed-chunk-6-1.png │ │ │ ├── unnamed-chunk-7-1.png │ │ │ └── unnamed-chunk-8-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── Vignette1.html │ ├── Vignette1_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-10-1.png │ │ │ ├── unnamed-chunk-3-1.png │ │ │ ├── unnamed-chunk-4-1.png │ │ │ ├── unnamed-chunk-5-1.png │ │ │ ├── unnamed-chunk-7-1.png │ │ │ └── unnamed-chunk-8-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── Vignette2.html │ ├── Vignette2_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-2-1.png │ │ │ ├── unnamed-chunk-6-1.png │ │ │ ├── unnamed-chunk-7-1.png │ │ │ └── unnamed-chunk-8-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── Vignette3.html │ ├── Vignette3_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-10-1.png │ │ │ ├── unnamed-chunk-11-1.png │ │ │ ├── unnamed-chunk-12-1.png │ │ │ ├── unnamed-chunk-13-1.png │ │ │ ├── unnamed-chunk-4-1.png │ │ │ ├── unnamed-chunk-5-1.png │ │ │ ├── unnamed-chunk-6-1.png │ │ │ ├── unnamed-chunk-8-1.png │ │ │ └── unnamed-chunk-9-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── Vignette4.html │ ├── Vignette4_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-11-1.png │ │ │ ├── unnamed-chunk-2-1.png │ │ │ ├── unnamed-chunk-7-1.png │ │ │ └── unnamed-chunk-9-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── Vignette5.html │ ├── Vignette5_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-10-1.png │ │ │ ├── unnamed-chunk-12-1.png │ │ │ ├── unnamed-chunk-13-1.png │ │ │ ├── unnamed-chunk-17-1.png │ │ │ ├── unnamed-chunk-18-1.png │ │ │ ├── unnamed-chunk-19-1.png │ │ │ ├── unnamed-chunk-22-1.png │ │ │ ├── unnamed-chunk-23-1.png │ │ │ ├── unnamed-chunk-5-1.png │ │ │ ├── unnamed-chunk-6-1.png │ │ │ ├── unnamed-chunk-7-1.png │ │ │ ├── unnamed-chunk-8-1.png │ │ │ └── unnamed-chunk-9-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── Vignette6.html │ ├── Vignette6_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-11-1.png │ │ │ ├── unnamed-chunk-12-1.png │ │ │ ├── unnamed-chunk-13-1.png │ │ │ ├── unnamed-chunk-14-1.png │ │ │ ├── unnamed-chunk-15-1.png │ │ │ ├── unnamed-chunk-16-1.png │ │ │ ├── unnamed-chunk-17-1.png │ │ │ ├── unnamed-chunk-18-1.png │ │ │ └── unnamed-chunk-9-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── Vignette7.html │ ├── Vignette7_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-12-1.png │ │ │ ├── unnamed-chunk-5-1.png │ │ │ ├── unnamed-chunk-7-1.png │ │ │ └── unnamed-chunk-8-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── Vignette8.html │ ├── Vignette8_files │ │ ├── figure-html │ │ │ └── unnamed-chunk-5-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── Vignette9.html │ ├── Vignette9_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-11-1.png │ │ │ └── unnamed-chunk-5-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── VignetteA.html │ ├── VignetteA_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-10-1.png │ │ │ ├── unnamed-chunk-12-1.png │ │ │ ├── unnamed-chunk-15-1.png │ │ │ ├── unnamed-chunk-16-1.png │ │ │ ├── unnamed-chunk-17-1.png │ │ │ ├── unnamed-chunk-19-1.png │ │ │ └── unnamed-chunk-7-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── VignetteB.html │ ├── VignetteB_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-3-1.png │ │ │ └── unnamed-chunk-5-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── VignetteC.html │ ├── VignetteC_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-6-1.png │ │ │ └── unnamed-chunk-8-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── VignetteD.html │ ├── VignetteD_files │ │ ├── figure-html │ │ │ └── fig2-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── VignetteE.html │ ├── VignetteE_files │ │ ├── figure-html │ │ │ ├── unnamed-chunk-10-1.png │ │ │ ├── unnamed-chunk-3-1.png │ │ │ ├── unnamed-chunk-4-1.png │ │ │ ├── unnamed-chunk-6-1.png │ │ │ └── unnamed-chunk-7-1.png │ │ └── header-attrs-2.9 │ │ │ └── header-attrs.js │ ├── VignetteF.html │ ├── VignetteF_files │ │ └── figure-html │ │ │ ├── unnamed-chunk-4-1.png │ │ │ ├── unnamed-chunk-8-1.png │ │ │ └── unnamed-chunk-9-1.png │ ├── VignetteG.html │ ├── VignetteG_files │ │ └── figure-html │ │ │ ├── unnamed-chunk-3-1.png │ │ │ ├── unnamed-chunk-4-1.png │ │ │ ├── unnamed-chunk-5-1.png │ │ │ └── unnamed-chunk-6-1.png │ ├── VignetteH.html │ ├── VignetteH_files │ │ └── figure-html │ │ │ ├── unnamed-chunk-2-1.png │ │ │ ├── unnamed-chunk-3-1.png │ │ │ ├── unnamed-chunk-4-1.png │ │ │ ├── unnamed-chunk-5-1.png │ │ │ ├── unnamed-chunk-6-1.png │ │ │ ├── unnamed-chunk-7-1.png │ │ │ └── unnamed-chunk-9-1.png │ └── index.html ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── deps │ ├── bootstrap-5.3.1 │ │ ├── bootstrap.bundle.min.js │ │ ├── bootstrap.bundle.min.js.map │ │ └── bootstrap.min.css │ ├── bootstrap-toc-1.0.1 │ │ └── bootstrap-toc.min.js │ ├── clipboard.js-2.0.11 │ │ └── clipboard.min.js │ ├── data-deps.txt │ ├── font-awesome-6.5.2 │ │ ├── css │ │ │ ├── all.css │ │ │ ├── all.min.css │ │ │ ├── v4-shims.css │ │ │ └── v4-shims.min.css │ │ └── webfonts │ │ │ ├── fa-brands-400.ttf │ │ │ ├── fa-brands-400.woff2 │ │ │ ├── fa-regular-400.ttf │ │ │ ├── fa-regular-400.woff2 │ │ │ ├── fa-solid-900.ttf │ │ │ ├── fa-solid-900.woff2 │ │ │ ├── fa-v4compatibility.ttf │ │ │ └── fa-v4compatibility.woff2 │ ├── headroom-0.11.0 │ │ ├── headroom.min.js │ │ └── jQuery.headroom.min.js │ ├── jquery-3.6.0 │ │ ├── jquery-3.6.0.js │ │ ├── jquery-3.6.0.min.js │ │ └── jquery-3.6.0.min.map │ └── search-1.0.0 │ │ ├── autocomplete.jquery.min.js │ │ ├── fuse.min.js │ │ └── mark.min.js ├── docsearch.css ├── docsearch.js ├── favicon-16x16.png ├── favicon-32x32.png ├── favicon.ico ├── index.html ├── katex-auto.js ├── lightswitch.js ├── link.svg ├── logo.png ├── news │ ├── index.html │ ├── news-0.9.html │ ├── news-0.95.html │ └── news-dev.html ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml ├── reference │ ├── CI.IQR.html │ ├── CI.MAD.html │ ├── CI.fisherkurtosis.html │ ├── CI.fisherskew.html │ ├── CI.gmean.html │ ├── CI.hmean.html │ ├── CI.mean.html │ ├── CI.meanNArm.html │ ├── CI.median.html │ ├── CI.pearsonskew.html │ ├── CI.sd.html │ ├── CI.var.html │ ├── CIwithDF.mean.html │ ├── CousineauLaurencelleLambda.html │ ├── GRD-1.png │ ├── GRD-2.png │ ├── GRD-3.png │ ├── GRD-4.png │ ├── GRD-5.png │ ├── GRD-6.png │ ├── GRD.html │ ├── HyunhFeldtEpsilon.html │ ├── MAD.html │ ├── MauchlySphericityTest.html │ ├── Rexpression.html │ ├── Rplot001.png │ ├── Rplot002.png │ ├── Rplot003.png │ ├── Rplot004.png │ ├── Rplot005.png │ ├── Rplot006.png │ ├── Rplot007.png │ ├── Rplot008.png │ ├── Rplot009.png │ ├── Rplot010.png │ ├── Rplot011.png │ ├── Rplot012.png │ ├── Rplot013.png │ ├── Rplot014.png │ ├── SE.IQR.html │ ├── SE.MAD.html │ ├── SE.fisherkurtosis.html │ ├── SE.fisherskew.html │ ├── SE.gmean.html │ ├── SE.hmean.html │ ├── SE.mean.html │ ├── SE.meanNArm.html │ ├── SE.median.html │ ├── SE.pearsonskew.html │ ├── SE.sd.html │ ├── SE.var.html │ ├── ShroutFleissICC1.html │ ├── ShroutFleissICC11.html │ ├── ShroutFleissICC1k.html │ ├── TMB1964r-1.png │ ├── TMB1964r-2.png │ ├── TMB1964r-3.png │ ├── TMB1964r-4.png │ ├── TMB1964r-5.png │ ├── TMB1964r.html │ ├── WelchDegreeOfFreedom.html │ ├── WinerCompoundSymmetryTest.html │ ├── biasCorrectionTransform.html │ ├── bootstrapPI.gmean.html │ ├── bootstrapPI.hmean.html │ ├── bootstrapPI.mean.html │ ├── bootstrapPI.median.html │ ├── bootstrapPI.sd.html │ ├── bootstrapPI.var.html │ ├── bootstrapPrecisionMeasures.html │ ├── bootstrapSE.gmean.html │ ├── bootstrapSE.hmean.html │ ├── bootstrapSE.mean.html │ ├── bootstrapSE.median.html │ ├── bootstrapSE.sd.html │ ├── bootstrapSE.var.html │ ├── custom.html │ ├── dataFigure1-1.png │ ├── dataFigure1.html │ ├── dataFigure2-1.png │ ├── dataFigure2.html │ ├── dataFigure3-1.png │ ├── dataFigure3.html │ ├── dataFigure4-1.png │ ├── dataFigure4.html │ ├── extent.html │ ├── fisherkurtosis.html │ ├── fisherskew.html │ ├── geom_flat_violin-1.png │ ├── geom_flat_violin-2.png │ ├── geom_flat_violin-3.png │ ├── geom_flat_violin-4.png │ ├── geom_flat_violin-5.png │ ├── geom_flat_violin-6.png │ ├── geom_flat_violin-7.png │ ├── geom_flat_violin.html │ ├── geom_superberrorbar-1.png │ ├── geom_superberrorbar-10.png │ ├── geom_superberrorbar-11.png │ ├── geom_superberrorbar-12.png │ ├── geom_superberrorbar-13.png │ ├── geom_superberrorbar-14.png │ ├── geom_superberrorbar-2.png │ ├── geom_superberrorbar-3.png │ ├── geom_superberrorbar-4.png │ ├── geom_superberrorbar-5.png │ ├── geom_superberrorbar-6.png │ ├── geom_superberrorbar-7.png │ ├── geom_superberrorbar-8.png │ ├── geom_superberrorbar-9.png │ ├── geom_superberrorbar.html │ ├── gmean.html │ ├── has.cbind.terms.html │ ├── has.crange.terms.html │ ├── has.nested.terms.html │ ├── hmean.html │ ├── in.formula.html │ ├── index.html │ ├── is.formula.html │ ├── is.one.sided.html │ ├── makeTransparent-1.png │ ├── makeTransparent-2.png │ ├── makeTransparent.html │ ├── meanNArm,.html │ ├── meanNArm.html │ ├── measuresWithMissingData.html │ ├── pearsonskew.html │ ├── poolSDTransform.html │ ├── precisionMeasureWithCustomDF-1.png │ ├── precisionMeasureWithCustomDF-2.png │ ├── precisionMeasureWithCustomDF.html │ ├── precisionMeasures.html │ ├── runDebug.html │ ├── showHorizontalSignificance.html │ ├── showSignificance-1.png │ ├── showSignificance-2.png │ ├── showSignificance-3.png │ ├── showSignificance-4.png │ ├── showSignificance.html │ ├── showVerticalSignificance.html │ ├── slope.html │ ├── sub.formulas.html │ ├── subjectCenteringTransform.html │ ├── summaryStatistics.html │ ├── superb-1.png │ ├── superb-2.png │ ├── superb-3.png │ ├── superb-4.png │ ├── superb-5.png │ ├── superb-6.png │ ├── superb-7.png │ ├── superb-package.html │ ├── superb.html │ ├── superbData.html │ ├── superbPlot-1.png │ ├── superbPlot-2.png │ ├── superbPlot-3.png │ ├── superbPlot-4.png │ ├── superbPlot-5.png │ ├── superbPlot-6.png │ ├── superbPlot-7.png │ ├── superbPlot-8.png │ ├── superbPlot.bar-1.png │ ├── superbPlot.bar.html │ ├── superbPlot.boxplot-1.png │ ├── superbPlot.boxplot-2.png │ ├── superbPlot.boxplot-3.png │ ├── superbPlot.boxplot-4.png │ ├── superbPlot.boxplot-5.png │ ├── superbPlot.boxplot-6.png │ ├── superbPlot.boxplot-7.png │ ├── superbPlot.boxplot.html │ ├── superbPlot.circularline-1.png │ ├── superbPlot.circularline.html │ ├── superbPlot.circularlineBand-1.png │ ├── superbPlot.circularlineBand.html │ ├── superbPlot.circularpoint-1.png │ ├── superbPlot.circularpoint.html │ ├── superbPlot.circularpointjitter-1.png │ ├── superbPlot.circularpointjitter.html │ ├── superbPlot.circularpointlinejitter-1.png │ ├── superbPlot.circularpointlinejitter.html │ ├── superbPlot.corset-1.png │ ├── superbPlot.corset-2.png │ ├── superbPlot.corset-3.png │ ├── superbPlot.corset-4.png │ ├── superbPlot.corset.html │ ├── superbPlot.halfwidthline-1.png │ ├── superbPlot.halfwidthline.html │ ├── superbPlot.html │ ├── superbPlot.line-1.png │ ├── superbPlot.line.html │ ├── superbPlot.lineBand-1.png │ ├── superbPlot.lineBand.html │ ├── superbPlot.point-1.png │ ├── superbPlot.point.html │ ├── superbPlot.pointindividualline-1.png │ ├── superbPlot.pointindividualline.html │ ├── superbPlot.pointjitter-1.png │ ├── superbPlot.pointjitter.html │ ├── superbPlot.pointjitterviolin-1.png │ ├── superbPlot.pointjitterviolin.html │ ├── superbPlot.pointlinejitter-1.png │ ├── superbPlot.pointlinejitter.html │ ├── superbPlot.raincloud-1.png │ ├── superbPlot.raincloud.html │ ├── superbShiny.html │ ├── superbToWide-1.png │ ├── superbToWide-2.png │ ├── superbToWide.html │ └── twoStepTransform.html ├── search.json └── sitemap.xml ├── inst ├── CITATION ├── REFERENCES.bib ├── apa-6th.csl ├── extdata │ ├── SPSS_Demo.sav │ └── Syntax1.png ├── refs │ ├── a10.dta │ ├── allen2019raincloud.dta │ ├── b12.dta │ ├── b21.dta │ ├── c05.dta │ ├── c17.dta │ ├── c19.dta │ ├── c20.dta │ ├── c90.dta │ ├── cg20.dta │ ├── cgh21.dta │ ├── ch19.dta │ ├── cl16.dta │ ├── cp34.dta │ ├── dll17.dta │ ├── et94.dta │ ├── f20.dta │ ├── gc18.dta │ ├── gc19.dta │ ├── gg58.dta │ ├── h19.dta │ ├── h2022.dta │ ├── hc14.dta │ ├── hc15.dta │ ├── hf76.dta │ ├── htc14.dta │ ├── htc15.dta │ ├── l07.dta │ ├── l91.dta │ ├── l99.dta │ ├── lc23.dta │ ├── lc23b.dta │ ├── lm71.dta │ ├── lm94.dta │ ├── lt96.dta │ ├── m08.dta │ ├── mm09.dta │ ├── n15.dta │ ├── nccls00.dta │ ├── nkm18.dta │ ├── oc14.dta │ ├── p20.dta │ ├── pj16.dta │ ├── pl10.dta │ ├── pw21.dta │ ├── r20.dta │ ├── rpw19.dta │ ├── sf79.dta │ ├── t01.dta │ ├── t12.dta │ ├── tmb64.dta │ ├── w11.dta │ ├── w21.dta │ ├── w47.dta │ └── w91.dta └── superbShiny │ ├── App.R │ └── rsconnect │ └── shinyapps.io │ ├── dcousin3 │ └── superbshiny.dcf │ └── superbplot │ └── superbshiny.dcf ├── logo.png ├── man ├── CousineauLaurencelleLambda.Rd ├── GRD.Rd ├── HyunhFeldtEpsilon.Rd ├── MauchlySphericityTest.Rd ├── ShroutFleissICC1.Rd ├── TMB1964r.Rd ├── WelchDegreeOfFreedom.Rd ├── WinerCompoundSymmetryTest.Rd ├── biasCorrectionTransform.Rd ├── bootstrapPrecisionMeasures.Rd ├── dataFigure1.Rd ├── dataFigure2.Rd ├── dataFigure3.Rd ├── dataFigure4.Rd ├── geom_flat_violin.Rd ├── geom_superberrorbar.Rd ├── is.formula.Rd ├── makeTransparent.Rd ├── measuresWithMissingData.Rd ├── poolSDTransform.Rd ├── precisionMeasureWithCustomDF.Rd ├── precisionMeasures.Rd ├── runDebug.Rd ├── showSignificance.Rd ├── slope.Rd ├── subjectCenteringTransform.Rd ├── summaryStatistics.Rd ├── superb-package.Rd ├── superb.Rd ├── superbData.Rd ├── superbPlot.Rd ├── superbPlot.bar.Rd ├── superbPlot.boxplot.Rd ├── superbPlot.circularline.Rd ├── superbPlot.circularlineBand.Rd ├── superbPlot.circularpoint.Rd ├── superbPlot.circularpointjitter.Rd ├── superbPlot.circularpointlinejitter.Rd ├── superbPlot.corset.Rd ├── superbPlot.halfwidthline.Rd ├── superbPlot.line.Rd ├── superbPlot.lineBand.Rd ├── superbPlot.point.Rd ├── superbPlot.pointindividualline.Rd ├── superbPlot.pointjitter.Rd ├── superbPlot.pointjitterviolin.Rd ├── superbPlot.pointlinejitter.Rd ├── superbPlot.raincloud.Rd ├── superbShiny.Rd ├── superbToWide.Rd └── twoStepTransform.Rd ├── pkgdown ├── _pkgdown.yml └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ └── favicon.ico ├── tests ├── testthat.R └── testthat │ ├── test_GRD.R │ ├── test_circularplots.R │ ├── test_compatibility.R │ ├── test_deprecated.R │ ├── test_experimental.R │ ├── test_geom_superberrorbar.R │ ├── test_missingData.R │ ├── test_showSignificance.R │ ├── test_subsidiaryFunctions.R │ ├── test_superb.R │ ├── test_superbData.R │ ├── test_superbPlot.R │ └── test_superbToWide.R └── vignettes ├── CustomizingSuperbPlots.Rmd ├── TheMakingOf.Rmd ├── Vignette1.Rmd ├── Vignette2.Rmd ├── Vignette3.Rmd ├── Vignette4.Rmd ├── Vignette5.Rmd ├── Vignette6.Rmd ├── Vignette7.Rmd ├── Vignette8.Rmd ├── Vignette9.Rmd ├── VignetteA.Rmd ├── VignetteB.Rmd ├── VignetteC.Rmd ├── VignetteD.Rmd ├── VignetteE.Rmd ├── VignetteF.Rmd ├── VignetteG.Rmd └── VignetteH.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- 1 | ^.git$ 2 | ^doc$ 3 | ^docs$ 4 | ^Meta$ 5 | ^cran-comments.md 6 | ^.travis.yml 7 | ^CRAN-RELEASE$ 8 | ^pkgdown$ 9 | ^_pkgdown\.yml$ 10 | ^README\.Rmd$ 11 | ^README_files$ 12 | ^logo.png$ 13 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | doc 2 | Meta 3 | /doc/ 4 | /Meta/ 5 | -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- 1 | language: r 2 | r: 3 | - release 4 | -------------------------------------------------------------------------------- /CRAN-SUBMISSION: -------------------------------------------------------------------------------- 1 | Version: 0.95.19 2 | Date: 2024-11-10 17:42:27 UTC 3 | SHA: 231296fd0abc782d1b40b6afadb2066426167ff3 4 | -------------------------------------------------------------------------------- /R/CousineauLaurencelleLambda.R: -------------------------------------------------------------------------------- 1 | ###################################################################################### 2 | #' @title Cousineau-Laurencelle's lambda correction for cluster-randomized sampling 3 | #' 4 | #' @md 5 | #' 6 | #' @description The functions CousineauLaurencelleLambda() returns the correction factor 7 | #' for cluster-randomized sampling. This correction is then used 8 | #' in a variety of ways, for example, to get the effective number of 9 | #' participants (in a power study) or to correct a t-test. 10 | #' See \insertCite{cl16}{superb}. 11 | #' 12 | #' @param paramvector A vector with, in that order, the intra-class correlation r, 13 | #' the number of clusters, then the number of participants in all the clusters. 14 | #' 15 | #' @return lambda the correction factor for cluster-randomized sampling. 16 | #' 17 | #' @references 18 | #' \insertAllCited{} 19 | #' 20 | #' @examples 21 | #' # Example from Cousineau & Laurencelle, 2017, p. 124: 22 | #' CousineauLaurencelleLambda( c(0.2, 5, 20, 20, 20, 20, 20) ) 23 | #' # 2.234188 24 | #' 25 | #' @export CousineauLaurencelleLambda 26 | # 27 | 28 | 29 | # compute the correction factor as per Cousineau & Laurencelle, 2016, Psyck Methods 30 | CousineauLaurencelleLambda <- function(paramvector) { 31 | r <- paramvector[1] # i.e. ICC 32 | r <- max(-0.2, r) 33 | k <- paramvector[2] # number of clusters 34 | ns <- paramvector[c(-1,-2)] # drop r and k 35 | 36 | M <- sum(ns^2) 37 | N <- sum(ns) 38 | nbar <- mean(ns) 39 | return(sqrt((1+(M/N-1) * r) / (1 - (nbar-1)/(N-1) * r))) 40 | } 41 | 42 | 43 | -------------------------------------------------------------------------------- /R/HyunhFeldtEpsilon.R: -------------------------------------------------------------------------------- 1 | ############################################################## 2 | #' @title Hyunh and Feldt's epsilon measure of sphericity 3 | #' 4 | #' @description HyunhFeldtEpsilon() is a measure of sphericity created by 5 | #' \insertCite{gg58;textual}{superb}. The original measure was biased 6 | #' and therefore, \insertCite{hf76;textual}{superb} produced a revised version 7 | #' (note that the 1976 paper contained typos that were uncorrected 8 | #' in SPSS; \insertCite{l91;textual}{superb}) 9 | #' 10 | #' @md 11 | #' 12 | #' @param dta a data.frame 13 | #' @param cols a vector of column names indicating the relevant 14 | #' columns on which to compute epsilon. Any other columns are ignored. 15 | #' 16 | #' @return returns the Hyunh-Feldt estimate of sphericity epsilon 17 | #' 18 | #' @references 19 | #' \insertAllCited{} 20 | #' 21 | #' @export HyunhFeldtEpsilon 22 | #' 23 | 24 | # from Chartier & Cousineau, TMJ, 2011 25 | HyunhFeldtEpsilon <- function(dta, cols) { 26 | # takes as input a data frame and column names of the measures 27 | X <- dta[cols] 28 | 29 | # Get basic descriptive statistics 30 | c <- length(X) 31 | n <- dim(X)[1] 32 | S <- cov(X) 33 | 34 | # collapse the matrix 35 | smjj <- mean(diag(S)) 36 | sm <- mean(colMeans(S)) 37 | sm2 <- sum(colMeans(S)^2) 38 | 39 | num <- c^2*(smjj-sm)^2 40 | denom <- (c-1)*(sum(sum(S^2))-2*c*sm2+c^2*sm^2) 41 | epsGG <- num / denom 42 | epsGG 43 | 44 | } 45 | -------------------------------------------------------------------------------- /R/WelchDegreeOfFreedom.R: -------------------------------------------------------------------------------- 1 | ###################################################################################### 2 | #' @title Welch's rectified degree of freedom 3 | #' 4 | #' @md 5 | #' 6 | #' @description When variance across groups are heterogeneous, 7 | #' the Student ``t`` distribution with ``n - 1`` df is not the exact distribution. 8 | #' However, \insertCite{w47}{superb}, using methods of moments, was able to find the 9 | #' best-fitting ``t`` distribution. This distribution has degree of freedom reduced 10 | #' based on the sample sizes and the variances of the group tests. The present 11 | #' function returns the rectified degree of freedom 12 | #' 13 | #' @param dta A data frame containing within-subject measures, one participant per line; 14 | #' @param cols A vector indicating the columns containing the measures. 15 | #' @param groupingcols A vector indicating the columns containing the groups. 16 | #' 17 | #' @return df the degrees of freedom rectified according to Welch (1947). 18 | #' 19 | #' @references 20 | #' \insertAllCited{} 21 | #' 22 | #' @examples 23 | #' # creates a small data frame with 4 subject's scores for 5 measures: 24 | #' dta <- data.frame(cbind( 25 | #' DV.1 = c(3., 6., 2., 2., 5.), 26 | #' DV.2 = c(4., 5., 4., 4., 3.), 27 | #' DV.3 = c(2., 7., 7., 8., 6.), 28 | #' DV.4 = c(6., 8., 4., 6., 5.), 29 | #' grp = c(1., 1., 2., 2., 2.) 30 | #' )) 31 | #' # performs the test (here rectified df = 1.898876) 32 | #' WelchDegreeOfFreedom(dta, "DV.1","grp") 33 | #' 34 | #' @export WelchDegreeOfFreedom 35 | #' 36 | WelchDegreeOfFreedom <- function(dta, cols, groupingcols) { 37 | # get standard deviations and sample sizes per group 38 | sds <- plyr::ddply(dta, .fun=colSDs, .variables = groupingcols)[,cols] 39 | ns <- plyr::ddply(dta, .fun=nrow, .variables = groupingcols)$V1 40 | # compute Welch rectified degree of freedom 41 | wdf <- (sum(sds^2/ns)^2) / (sum(sds^4/(ns^2*(ns-1)))) 42 | wdf 43 | } 44 | -------------------------------------------------------------------------------- /R/dataFigure1.R: -------------------------------------------------------------------------------- 1 | #' Data for Figure 1 2 | #' 3 | #' The data, taken from \insertCite{c17}{superb}, is an example where the 4 | #' "stand-alone" 95\\% confidence interval of the means returns 5 | #' a result in contradiction with the result of a statistical test. 6 | #' The paradoxical result is resolved by using adjusted confidence intervals, 7 | #' here the different-adjusted confidence interval. 8 | #' 9 | #' @md 10 | #' 11 | #' @docType data 12 | #' 13 | #' @usage data(dataFigure1) 14 | #' 15 | #' @format An object of class data.frame. 16 | #' 17 | #' @keywords datasets 18 | #' 19 | #' @references 20 | #' \insertAllCited{} 21 | #' 22 | #' @source \doi{10.5709/acp-0214-z} 23 | #' 24 | #' @examples 25 | #' library(ggplot2) 26 | #' library(gridExtra) 27 | #' data(dataFigure1) 28 | #' 29 | #' options(superb.feedback = 'none') # shut down 'warnings' and 'design' interpretation messages 30 | #' 31 | #' ## realize the plot with unadjusted (left) and ajusted (right) 95% confidence intervals 32 | #' plt1a <- superb( 33 | #' score ~ grp, 34 | #' dataFigure1, 35 | #' adjustments=list(purpose = "single"), 36 | #' plotLayout="bar" ) + 37 | #' xlab("Group") + ylab("Score") + labs(title="95% CI\n") + 38 | #' coord_cartesian( ylim = c(85,115) ) + 39 | #' geom_hline(yintercept = 100, colour = "black", linewidth = 0.5, linetype=2) 40 | #' plt1b <- superb( 41 | #' score ~ grp, 42 | #' dataFigure1, 43 | #' adjustments=list(purpose = "difference"), 44 | #' plotLayout="bar" ) + 45 | #' xlab("Group") + ylab("Score") + labs(title="Difference-adjusted 95% CI\n") + 46 | #' coord_cartesian( ylim = c(85,115) ) + 47 | #' geom_hline(yintercept = 100, colour = "black", linewidth = 0.5, linetype=2) 48 | #' plt1 <- grid.arrange(plt1a,plt1b,ncol=2) 49 | #' 50 | #' ## realise the correct t-test to see the discrepancy 51 | #' t.test(dataFigure1$score[dataFigure1$grp==1], 52 | #' dataFigure1$score[dataFigure1$grp==2], 53 | #' var.equal=TRUE) 54 | #' 55 | "dataFigure1" -------------------------------------------------------------------------------- /R/dataFigure2.R: -------------------------------------------------------------------------------- 1 | #' Data for Figure 2 2 | #' 3 | #' @description The data, taken from \insertCite{c17}{superb}7, is an example 4 | #' where the 5 | #' "stand-alone" 95\\% confidence interval of the means returns 6 | #' a result in contradiction with the result of a statistical test. 7 | #' The paradoxical result is resolved by using adjusted confidence intervals, 8 | #' here the correlation- and different-adjusted confidence interval. 9 | #' 10 | #' @md 11 | #' 12 | #' @docType data 13 | #' 14 | #' @usage data(dataFigure2) 15 | #' 16 | #' @format An object of class data.frame. 17 | #' 18 | #' @keywords datasets 19 | #' 20 | #' @references 21 | #' \insertAllCited{} 22 | #' 23 | #' @source \doi{10.5709/acp-0214-z} 24 | #' 25 | #' @examples 26 | #' library(ggplot2) 27 | #' library(gridExtra) 28 | #' data(dataFigure2) 29 | #' 30 | #' options(superb.feedback = 'none') # shut down 'warnings' and 'design' interpretation messages 31 | #' 32 | #' ## realize the plot with unadjusted (left) and ajusted (right) 95% confidence intervals 33 | #' plt2a <- superb( 34 | #' cbind(pre, post) ~ ., 35 | #' dataFigure2, 36 | #' WSFactors = "Moment(2)", 37 | #' adjustments=list(purpose = "difference"), 38 | #' plotLayout="bar" ) + 39 | #' xlab("Group") + ylab("Score") + labs(title="Difference-adjusted 95% CI\n") + 40 | #' coord_cartesian( ylim = c(85,115) ) + 41 | #' geom_hline(yintercept = 100, colour = "black", linewidth = 0.5, linetype=2) 42 | #' plt2b <- superb( 43 | #' cbind(pre, post) ~ ., 44 | #' dataFigure2, 45 | #' WSFactors = "Moment(2)", 46 | #' adjustments=list(purpose = "difference", decorrelation = "CA"), 47 | #' plotLayout="bar" ) + 48 | #' xlab("Group") + ylab("Score") + labs(title="Correlation and difference-adjusted\n95% CI") + 49 | #' coord_cartesian( ylim = c(85,115) ) + 50 | #' geom_hline(yintercept = 100, colour = "black", linewidth = 0.5, linetype=2) 51 | #' plt2 <- grid.arrange(plt2a,plt2b,ncol=2) 52 | #' 53 | #' ## realise the correct t-test to see the discrepancy 54 | #' t.test(dataFigure2$pre, dataFigure2$post, paired=TRUE) 55 | #' 56 | "dataFigure2" -------------------------------------------------------------------------------- /R/dataFigure4.R: -------------------------------------------------------------------------------- 1 | #' Data for Figure 4 2 | #' 3 | #' The data, inspired from \insertCite{c17}{superb}, shows an example where the 4 | #' "stand-alone" 95\% confidence interval of the means returns 5 | #' a result in contradiction with the result of a statistical test. 6 | #' The paradoxical result is resolved by using adjusted confidence intervals, 7 | #' here the population size-adjusted confidence interval. 8 | #' 9 | #' @docType data 10 | #' 11 | #' @md 12 | #' 13 | #' @usage data(dataFigure4) 14 | #' 15 | #' @format An object of class data.frame. 16 | #' 17 | #' @keywords datasets 18 | #' 19 | #' @references 20 | #' \insertAllCited{} 21 | #' 22 | #' @source \doi{10.5709/acp-0214-z} 23 | #' 24 | #' @examples 25 | #' library(ggplot2) 26 | #' library(gridExtra) 27 | #' data(dataFigure4) 28 | #' 29 | #' options(superb.feedback = 'none') # shut down 'warnings' and 'design' interpretation messages 30 | #' 31 | #' ## realize the plot with unadjusted (left) and ajusted (right) 95% confidence intervals 32 | #' plt4a = superb( 33 | #' score ~ group, 34 | #' dataFigure4, 35 | #' adjustments=list(purpose = "single", popSize = Inf), 36 | #' plotLayout="bar" ) + 37 | #' xlab("Group") + ylab("Score") + labs(title="Difference-adjusted 95% CI\n") + 38 | #' coord_cartesian( ylim = c(85,115) ) + 39 | #' geom_hline(yintercept = 100, colour = "black", linewidth = 0.5, linetype=2) 40 | #' plt4b = superb( 41 | #' score ~ group, 42 | #' dataFigure4, 43 | #' adjustments=list(purpose = "single", popSize = 50 ), 44 | #' plotLayout="bar" ) + 45 | #' xlab("Group") + ylab("Score") + labs(title="Population size and difference-\nadjusted 95% CI") + 46 | #' coord_cartesian( ylim = c(85,115) ) + 47 | #' geom_hline(yintercept = 100, colour = "black", linewidth = 0.5, linetype=2) 48 | #' plt4 = grid.arrange(plt4a,plt4b,ncol=2) 49 | #' 50 | #' ## realise the correct t-test to see the discrepancy 51 | #' res = t.test(dataFigure4$score, mu=100) 52 | #' tcorr = res$statistic /sqrt(1-25/50) 53 | #' pcorr = 1-pt(tcorr,24) 54 | #' c(tcorr, pcorr) 55 | #' 56 | #' 57 | "dataFigure4" -------------------------------------------------------------------------------- /R/makeTransparent.R: -------------------------------------------------------------------------------- 1 | ###################################################################################### 2 | #' @title makes ggplots with transparent elements 3 | #' 4 | #' @description makeTransparent is an extension to ggplots 5 | #' which makes all the elements of the plot transparent 6 | #' except the data being displayed. This is useful to 7 | #' superimpose multiple plots, e.g. to generate plots with 8 | #' multiple error bars for example. 9 | #' 10 | #' @md 11 | #' 12 | #' @examples 13 | #' 14 | #' # make a basic plot 15 | #' superb(len ~ dose + supp, ToothGrowth ) 16 | #' # make a basic plot with transparent elements 17 | #' superb(len ~ dose + supp, ToothGrowth, 18 | #' ) + makeTransparent() 19 | #' 20 | #' @return does not return anything; set the elements to transparent. 21 | #' 22 | #' @export makeTransparent 23 | ###################################################################################### 24 | 25 | makeTransparent <- function() { 26 | # no argument; just graphic directives to hide elements 27 | theme( 28 | panel.grid.major = element_blank(), 29 | panel.grid.minor = element_blank(), 30 | panel.background = element_rect(fill = "transparent",colour = NA), 31 | plot.background = element_rect(fill = "transparent",colour = NA) 32 | ) 33 | } 34 | 35 | ################################################################## 36 | # End of makeTransparent. 37 | ################################################################## 38 | -------------------------------------------------------------------------------- /R/superbShiny.R: -------------------------------------------------------------------------------- 1 | ###################################################################################### 2 | #' @title User Interface to get summary plot of any statistics with adjusted error bars. 3 | #' 4 | #' @md 5 | #' 6 | #' @description The function ``suberbShiny()`` provides a simple user interface 7 | #' to plot standard error or confidence interval for various descriptive 8 | #' statistics under various designs, population size and purposes, 9 | #' according to the ``suberb`` framework. See \insertCite{cgh21}{superb} for more. 10 | #' Also see this \href{https://www.youtube.com/watch?v=rw_6ll5nVus/}{video} 11 | #' from \insertCite{w21}{superb} for a demo using 12 | #' the shinyapps.io installation accessible at 13 | #' \href{https://dcousin3.shinyapps.io/superbshiny/}{dcousin3.shinyapps.io/superbshiny} 14 | #' Limitations: it is not possible to use custom-made statistics with the 15 | #' graphical user interface, nor is it possible to request an adjustment for cluster- 16 | #' randomized sampling. These options are available with ``superb()``. 17 | #' 18 | #' @param graphicDirectives (optional) used to set graphic directives from the command line. 19 | #' This is useful for in-class demonstrations where the ylim() range should be set before 20 | #' reaching the last step of the GIU. 21 | #' 22 | #' @return A plot that can be cut-and-paste. 23 | #' 24 | #' @references 25 | #' \insertAllCited{} 26 | #' 27 | #' @examples 28 | #' # Launch the user interface: 29 | #' \donttest{ 30 | #' if (interactive()) 31 | #' superbShiny() 32 | #' } 33 | #' 34 | #' @export superbShiny 35 | #' @importFrom stringr str_remove_all 36 | #' @importFrom stringr str_replace_all 37 | #' @importFrom foreign read.spss 38 | #' @import ggplot2 39 | #' @import shiny 40 | #' @import shinyBS 41 | # 42 | ###################################################################################### 43 | 44 | 45 | 46 | superbShiny <- function( graphicDirectives = NULL ) { 47 | dir <- system.file("superbShiny", package="superb") 48 | options(shiny.launch.browser = TRUE) 49 | 50 | # send the additional graphic directives into options for easier retrieval by the app 51 | options( "superb.shiny.GR" = graphicDirectives ) 52 | 53 | shiny::runApp(dir) 54 | } 55 | -------------------------------------------------------------------------------- /README_files/figure-gfm/unnamed-chunk-10-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/README_files/figure-gfm/unnamed-chunk-10-1.png -------------------------------------------------------------------------------- /README_files/figure-gfm/unnamed-chunk-11-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/README_files/figure-gfm/unnamed-chunk-11-1.png -------------------------------------------------------------------------------- /README_files/figure-gfm/unnamed-chunk-12-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/README_files/figure-gfm/unnamed-chunk-12-1.png -------------------------------------------------------------------------------- /README_files/figure-gfm/unnamed-chunk-6-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/README_files/figure-gfm/unnamed-chunk-6-1.png -------------------------------------------------------------------------------- /README_files/figure-gfm/unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/README_files/figure-gfm/unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /README_files/figure-gfm/unnamed-chunk-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/README_files/figure-gfm/unnamed-chunk-8-1.png -------------------------------------------------------------------------------- /data/TMB1964r.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/data/TMB1964r.RData -------------------------------------------------------------------------------- /data/dataFigure1.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/data/dataFigure1.RData -------------------------------------------------------------------------------- /data/dataFigure2.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/data/dataFigure2.RData -------------------------------------------------------------------------------- /data/dataFigure3.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/data/dataFigure3.RData -------------------------------------------------------------------------------- /data/dataFigure4.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/data/dataFigure4.RData -------------------------------------------------------------------------------- /docs/README_files/figure-gfm/unnamed-chunk-10-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/README_files/figure-gfm/unnamed-chunk-10-1.png -------------------------------------------------------------------------------- /docs/README_files/figure-gfm/unnamed-chunk-11-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/README_files/figure-gfm/unnamed-chunk-11-1.png -------------------------------------------------------------------------------- /docs/README_files/figure-gfm/unnamed-chunk-12-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/README_files/figure-gfm/unnamed-chunk-12-1.png -------------------------------------------------------------------------------- /docs/README_files/figure-gfm/unnamed-chunk-6-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/README_files/figure-gfm/unnamed-chunk-6-1.png -------------------------------------------------------------------------------- /docs/README_files/figure-gfm/unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/README_files/figure-gfm/unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /docs/README_files/figure-gfm/unnamed-chunk-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/README_files/figure-gfm/unnamed-chunk-8-1.png -------------------------------------------------------------------------------- /docs/apple-touch-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/apple-touch-icon-120x120.png -------------------------------------------------------------------------------- /docs/apple-touch-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/apple-touch-icon-152x152.png -------------------------------------------------------------------------------- /docs/apple-touch-icon-180x180.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/apple-touch-icon-180x180.png -------------------------------------------------------------------------------- /docs/apple-touch-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/apple-touch-icon-60x60.png -------------------------------------------------------------------------------- /docs/apple-touch-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/apple-touch-icon-76x76.png -------------------------------------------------------------------------------- /docs/apple-touch-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/apple-touch-icon.png -------------------------------------------------------------------------------- /docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-16-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-16-1.png -------------------------------------------------------------------------------- /docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-17-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-17-1.png -------------------------------------------------------------------------------- /docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-18-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-18-1.png -------------------------------------------------------------------------------- /docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-19-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-19-1.png -------------------------------------------------------------------------------- /docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-20-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-20-1.png -------------------------------------------------------------------------------- /docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-21-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-21-1.png -------------------------------------------------------------------------------- /docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-4-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-4-1.png -------------------------------------------------------------------------------- /docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-5-1.png -------------------------------------------------------------------------------- /docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-8-1.png -------------------------------------------------------------------------------- /docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-9-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/CustomizingSuperbPlots_files/figure-html/unnamed-chunk-9-1.png -------------------------------------------------------------------------------- /docs/articles/CustomizingSuperbPlots_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-13-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-13-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-14-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-14-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-15-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-15-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-17-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-17-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-18-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-18-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-22-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-22-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-23-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-23-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-25-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-25-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-3-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-3-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-32-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-32-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-5-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-6-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-6-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/TheMakingOf_files/figure-html/unnamed-chunk-8-1.png -------------------------------------------------------------------------------- /docs/articles/TheMakingOf_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/Vignette1_files/figure-html/unnamed-chunk-10-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette1_files/figure-html/unnamed-chunk-10-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette1_files/figure-html/unnamed-chunk-3-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette1_files/figure-html/unnamed-chunk-3-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette1_files/figure-html/unnamed-chunk-4-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette1_files/figure-html/unnamed-chunk-4-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette1_files/figure-html/unnamed-chunk-5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette1_files/figure-html/unnamed-chunk-5-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette1_files/figure-html/unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette1_files/figure-html/unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette1_files/figure-html/unnamed-chunk-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette1_files/figure-html/unnamed-chunk-8-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette1_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/Vignette2_files/figure-html/unnamed-chunk-2-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette2_files/figure-html/unnamed-chunk-2-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette2_files/figure-html/unnamed-chunk-6-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette2_files/figure-html/unnamed-chunk-6-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette2_files/figure-html/unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette2_files/figure-html/unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette2_files/figure-html/unnamed-chunk-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette2_files/figure-html/unnamed-chunk-8-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette2_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/Vignette3_files/figure-html/unnamed-chunk-10-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette3_files/figure-html/unnamed-chunk-10-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette3_files/figure-html/unnamed-chunk-11-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette3_files/figure-html/unnamed-chunk-11-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette3_files/figure-html/unnamed-chunk-12-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette3_files/figure-html/unnamed-chunk-12-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette3_files/figure-html/unnamed-chunk-13-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette3_files/figure-html/unnamed-chunk-13-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette3_files/figure-html/unnamed-chunk-4-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette3_files/figure-html/unnamed-chunk-4-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette3_files/figure-html/unnamed-chunk-5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette3_files/figure-html/unnamed-chunk-5-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette3_files/figure-html/unnamed-chunk-6-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette3_files/figure-html/unnamed-chunk-6-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette3_files/figure-html/unnamed-chunk-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette3_files/figure-html/unnamed-chunk-8-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette3_files/figure-html/unnamed-chunk-9-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette3_files/figure-html/unnamed-chunk-9-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette3_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/Vignette4_files/figure-html/unnamed-chunk-11-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette4_files/figure-html/unnamed-chunk-11-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette4_files/figure-html/unnamed-chunk-2-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette4_files/figure-html/unnamed-chunk-2-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette4_files/figure-html/unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette4_files/figure-html/unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette4_files/figure-html/unnamed-chunk-9-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette4_files/figure-html/unnamed-chunk-9-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette4_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-10-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-10-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-12-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-12-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-13-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-13-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-17-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-17-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-18-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-18-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-19-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-19-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-22-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-22-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-23-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-23-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-5-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-6-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-6-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-8-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/figure-html/unnamed-chunk-9-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette5_files/figure-html/unnamed-chunk-9-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette5_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/Vignette6_files/figure-html/unnamed-chunk-11-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette6_files/figure-html/unnamed-chunk-11-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette6_files/figure-html/unnamed-chunk-12-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette6_files/figure-html/unnamed-chunk-12-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette6_files/figure-html/unnamed-chunk-13-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette6_files/figure-html/unnamed-chunk-13-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette6_files/figure-html/unnamed-chunk-14-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette6_files/figure-html/unnamed-chunk-14-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette6_files/figure-html/unnamed-chunk-15-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette6_files/figure-html/unnamed-chunk-15-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette6_files/figure-html/unnamed-chunk-16-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette6_files/figure-html/unnamed-chunk-16-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette6_files/figure-html/unnamed-chunk-17-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette6_files/figure-html/unnamed-chunk-17-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette6_files/figure-html/unnamed-chunk-18-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette6_files/figure-html/unnamed-chunk-18-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette6_files/figure-html/unnamed-chunk-9-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette6_files/figure-html/unnamed-chunk-9-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette6_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/Vignette7_files/figure-html/unnamed-chunk-12-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette7_files/figure-html/unnamed-chunk-12-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette7_files/figure-html/unnamed-chunk-5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette7_files/figure-html/unnamed-chunk-5-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette7_files/figure-html/unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette7_files/figure-html/unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette7_files/figure-html/unnamed-chunk-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette7_files/figure-html/unnamed-chunk-8-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette7_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/Vignette8_files/figure-html/unnamed-chunk-5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette8_files/figure-html/unnamed-chunk-5-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette8_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/Vignette9_files/figure-html/unnamed-chunk-11-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette9_files/figure-html/unnamed-chunk-11-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette9_files/figure-html/unnamed-chunk-5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/Vignette9_files/figure-html/unnamed-chunk-5-1.png -------------------------------------------------------------------------------- /docs/articles/Vignette9_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/VignetteA_files/figure-html/unnamed-chunk-10-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteA_files/figure-html/unnamed-chunk-10-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteA_files/figure-html/unnamed-chunk-12-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteA_files/figure-html/unnamed-chunk-12-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteA_files/figure-html/unnamed-chunk-15-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteA_files/figure-html/unnamed-chunk-15-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteA_files/figure-html/unnamed-chunk-16-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteA_files/figure-html/unnamed-chunk-16-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteA_files/figure-html/unnamed-chunk-17-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteA_files/figure-html/unnamed-chunk-17-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteA_files/figure-html/unnamed-chunk-19-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteA_files/figure-html/unnamed-chunk-19-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteA_files/figure-html/unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteA_files/figure-html/unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteA_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/VignetteB_files/figure-html/unnamed-chunk-3-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteB_files/figure-html/unnamed-chunk-3-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteB_files/figure-html/unnamed-chunk-5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteB_files/figure-html/unnamed-chunk-5-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteB_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/VignetteC_files/figure-html/unnamed-chunk-6-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteC_files/figure-html/unnamed-chunk-6-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteC_files/figure-html/unnamed-chunk-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteC_files/figure-html/unnamed-chunk-8-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteC_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/VignetteD_files/figure-html/fig2-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteD_files/figure-html/fig2-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteD_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/VignetteE_files/figure-html/unnamed-chunk-10-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteE_files/figure-html/unnamed-chunk-10-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteE_files/figure-html/unnamed-chunk-3-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteE_files/figure-html/unnamed-chunk-3-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteE_files/figure-html/unnamed-chunk-4-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteE_files/figure-html/unnamed-chunk-4-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteE_files/figure-html/unnamed-chunk-6-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteE_files/figure-html/unnamed-chunk-6-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteE_files/figure-html/unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteE_files/figure-html/unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteE_files/header-attrs-2.9/header-attrs.js: -------------------------------------------------------------------------------- 1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to 2 | // be compatible with the behavior of Pandoc < 2.8). 3 | document.addEventListener('DOMContentLoaded', function(e) { 4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child"); 5 | var i, h, a; 6 | for (i = 0; i < hs.length; i++) { 7 | h = hs[i]; 8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6 9 | a = h.attributes; 10 | while (a.length > 0) h.removeAttribute(a[0].name); 11 | } 12 | }); 13 | -------------------------------------------------------------------------------- /docs/articles/VignetteF_files/figure-html/unnamed-chunk-4-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteF_files/figure-html/unnamed-chunk-4-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteF_files/figure-html/unnamed-chunk-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteF_files/figure-html/unnamed-chunk-8-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteF_files/figure-html/unnamed-chunk-9-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteF_files/figure-html/unnamed-chunk-9-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteG_files/figure-html/unnamed-chunk-3-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteG_files/figure-html/unnamed-chunk-3-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteG_files/figure-html/unnamed-chunk-4-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteG_files/figure-html/unnamed-chunk-4-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteG_files/figure-html/unnamed-chunk-5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteG_files/figure-html/unnamed-chunk-5-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteG_files/figure-html/unnamed-chunk-6-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteG_files/figure-html/unnamed-chunk-6-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteH_files/figure-html/unnamed-chunk-2-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteH_files/figure-html/unnamed-chunk-2-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteH_files/figure-html/unnamed-chunk-3-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteH_files/figure-html/unnamed-chunk-3-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteH_files/figure-html/unnamed-chunk-4-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteH_files/figure-html/unnamed-chunk-4-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteH_files/figure-html/unnamed-chunk-5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteH_files/figure-html/unnamed-chunk-5-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteH_files/figure-html/unnamed-chunk-6-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteH_files/figure-html/unnamed-chunk-6-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteH_files/figure-html/unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteH_files/figure-html/unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /docs/articles/VignetteH_files/figure-html/unnamed-chunk-9-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/articles/VignetteH_files/figure-html/unnamed-chunk-9-1.png -------------------------------------------------------------------------------- /docs/bootstrap-toc.css: -------------------------------------------------------------------------------- 1 | /*! 2 | * Bootstrap Table of Contents v0.4.1 (http://afeld.github.io/bootstrap-toc/) 3 | * Copyright 2015 Aidan Feldman 4 | * Licensed under MIT (https://github.com/afeld/bootstrap-toc/blob/gh-pages/LICENSE.md) */ 5 | 6 | /* modified from https://github.com/twbs/bootstrap/blob/94b4076dd2efba9af71f0b18d4ee4b163aa9e0dd/docs/assets/css/src/docs.css#L548-L601 */ 7 | 8 | /* All levels of nav */ 9 | nav[data-toggle='toc'] .nav > li > a { 10 | display: block; 11 | padding: 4px 20px; 12 | font-size: 13px; 13 | font-weight: 500; 14 | color: #767676; 15 | } 16 | nav[data-toggle='toc'] .nav > li > a:hover, 17 | nav[data-toggle='toc'] .nav > li > a:focus { 18 | padding-left: 19px; 19 | color: #563d7c; 20 | text-decoration: none; 21 | background-color: transparent; 22 | border-left: 1px solid #563d7c; 23 | } 24 | nav[data-toggle='toc'] .nav > .active > a, 25 | nav[data-toggle='toc'] .nav > .active:hover > a, 26 | nav[data-toggle='toc'] .nav > .active:focus > a { 27 | padding-left: 18px; 28 | font-weight: bold; 29 | color: #563d7c; 30 | background-color: transparent; 31 | border-left: 2px solid #563d7c; 32 | } 33 | 34 | /* Nav: second level (shown on .active) */ 35 | nav[data-toggle='toc'] .nav .nav { 36 | display: none; /* Hide by default, but at >768px, show it */ 37 | padding-bottom: 10px; 38 | } 39 | nav[data-toggle='toc'] .nav .nav > li > a { 40 | padding-top: 1px; 41 | padding-bottom: 1px; 42 | padding-left: 30px; 43 | font-size: 12px; 44 | font-weight: normal; 45 | } 46 | nav[data-toggle='toc'] .nav .nav > li > a:hover, 47 | nav[data-toggle='toc'] .nav .nav > li > a:focus { 48 | padding-left: 29px; 49 | } 50 | nav[data-toggle='toc'] .nav .nav > .active > a, 51 | nav[data-toggle='toc'] .nav .nav > .active:hover > a, 52 | nav[data-toggle='toc'] .nav .nav > .active:focus > a { 53 | padding-left: 28px; 54 | font-weight: 500; 55 | } 56 | 57 | /* from https://github.com/twbs/bootstrap/blob/e38f066d8c203c3e032da0ff23cd2d6098ee2dd6/docs/assets/css/src/docs.css#L631-L634 */ 58 | nav[data-toggle='toc'] .nav > .active > ul { 59 | display: block; 60 | } 61 | -------------------------------------------------------------------------------- /docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js: -------------------------------------------------------------------------------- 1 | /*! 2 | * Bootstrap Table of Contents v1.0.1 (http://afeld.github.io/bootstrap-toc/) 3 | * Copyright 2015 Aidan Feldman 4 | * Licensed under MIT (https://github.com/afeld/bootstrap-toc/blob/gh-pages/LICENSE.md) */ 5 | !function(a){"use strict";window.Toc={helpers:{findOrFilter:function(e,t){var n=e.find(t);return e.filter(t).add(n).filter(":not([data-toc-skip])")},generateUniqueIdBase:function(e){return a(e).text().trim().replace(/\'/gi,"").replace(/[& +$,:;=?@"#{}|^~[`%!'<>\]\.\/\(\)\*\\\n\t\b\v]/g,"-").replace(/-{2,}/g,"-").substring(0,64).replace(/^-+|-+$/gm,"").toLowerCase()||e.tagName.toLowerCase()},generateUniqueId:function(e){for(var t=this.generateUniqueIdBase(e),n=0;;n++){var r=t;if(0')},createChildNavList:function(e){var t=this.createNavList();return e.append(t),t},generateNavEl:function(e,t){var n=a('');n.attr("href","#"+e),n.text(t);var r=a("
  • ");return r.append(n),r},generateNavItem:function(e){var t=this.generateAnchor(e),n=a(e),r=n.data("toc-text")||n.text();return this.generateNavEl(t,r)},getTopLevel:function(e){for(var t=1;t<=6;t++){if(1 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.ttf -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.woff2 -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-regular-400.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/deps/font-awesome-6.5.2/webfonts/fa-regular-400.ttf -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-regular-400.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/deps/font-awesome-6.5.2/webfonts/fa-regular-400.woff2 -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-solid-900.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/deps/font-awesome-6.5.2/webfonts/fa-solid-900.ttf -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-solid-900.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/deps/font-awesome-6.5.2/webfonts/fa-solid-900.woff2 -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.ttf -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.woff2 -------------------------------------------------------------------------------- /docs/deps/headroom-0.11.0/jQuery.headroom.min.js: -------------------------------------------------------------------------------- 1 | /*! 2 | * headroom.js v0.9.4 - Give your page some headroom. Hide your header until you need it 3 | * Copyright (c) 2017 Nick Williams - http://wicky.nillia.ms/headroom.js 4 | * License: MIT 5 | */ 6 | 7 | !function(a){a&&(a.fn.headroom=function(b){return this.each(function(){var c=a(this),d=c.data("headroom"),e="object"==typeof b&&b;e=a.extend(!0,{},Headroom.options,e),d||(d=new Headroom(this,e),d.init(),c.data("headroom",d)),"string"==typeof b&&(d[b](),"destroy"===b&&c.removeData("headroom"))})},a("[data-headroom]").each(function(){var b=a(this);b.headroom(b.data())}))}(window.Zepto||window.jQuery); -------------------------------------------------------------------------------- /docs/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/favicon-16x16.png -------------------------------------------------------------------------------- /docs/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/favicon-32x32.png -------------------------------------------------------------------------------- /docs/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/favicon.ico -------------------------------------------------------------------------------- /docs/katex-auto.js: -------------------------------------------------------------------------------- 1 | // https://github.com/jgm/pandoc/blob/29fa97ab96b8e2d62d48326e1b949a71dc41f47a/src/Text/Pandoc/Writers/HTML.hs#L332-L345 2 | document.addEventListener("DOMContentLoaded", function () { 3 | var mathElements = document.getElementsByClassName("math"); 4 | var macros = []; 5 | for (var i = 0; i < mathElements.length; i++) { 6 | var texText = mathElements[i].firstChild; 7 | if (mathElements[i].tagName == "SPAN") { 8 | katex.render(texText.data, mathElements[i], { 9 | displayMode: mathElements[i].classList.contains("display"), 10 | throwOnError: false, 11 | macros: macros, 12 | fleqn: false 13 | }); 14 | }}}); 15 | -------------------------------------------------------------------------------- /docs/link.svg: -------------------------------------------------------------------------------- 1 | 2 | 3 | 5 | 8 | 12 | 13 | -------------------------------------------------------------------------------- /docs/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/logo.png -------------------------------------------------------------------------------- /docs/pkgdown.yml: -------------------------------------------------------------------------------- 1 | pandoc: 3.6.2 2 | pkgdown: 2.1.1 3 | pkgdown_sha: ~ 4 | articles: 5 | CustomizingSuperbPlots: CustomizingSuperbPlots.html 6 | TheMakingOf: TheMakingOf.html 7 | Vignette1: Vignette1.html 8 | Vignette2: Vignette2.html 9 | Vignette3: Vignette3.html 10 | Vignette4: Vignette4.html 11 | Vignette5: Vignette5.html 12 | Vignette6: Vignette6.html 13 | Vignette7: Vignette7.html 14 | Vignette8: Vignette8.html 15 | Vignette9: Vignette9.html 16 | VignetteA: VignetteA.html 17 | VignetteB: VignetteB.html 18 | VignetteC: VignetteC.html 19 | VignetteD: VignetteD.html 20 | VignetteE: VignetteE.html 21 | VignetteF: VignetteF.html 22 | VignetteG: VignetteG.html 23 | VignetteH: VignetteH.html 24 | last_built: 2025-05-25T16:33Z 25 | urls: 26 | reference: http://dcousin3.github.io/superb/reference 27 | article: http://dcousin3.github.io/superb/articles 28 | -------------------------------------------------------------------------------- /docs/reference/CI.IQR.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/CI.MAD.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/CI.fisherkurtosis.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/CI.fisherskew.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/CI.gmean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/CI.hmean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/CI.mean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/CI.meanNArm.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/CI.median.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/CI.pearsonskew.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/CI.sd.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/CI.var.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/CIwithDF.mean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/GRD-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/GRD-1.png -------------------------------------------------------------------------------- /docs/reference/GRD-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/GRD-2.png -------------------------------------------------------------------------------- /docs/reference/GRD-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/GRD-3.png -------------------------------------------------------------------------------- /docs/reference/GRD-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/GRD-4.png -------------------------------------------------------------------------------- /docs/reference/GRD-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/GRD-5.png -------------------------------------------------------------------------------- /docs/reference/GRD-6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/GRD-6.png -------------------------------------------------------------------------------- /docs/reference/MAD.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/Rexpression.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/Rplot001.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot001.png -------------------------------------------------------------------------------- /docs/reference/Rplot002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot002.png -------------------------------------------------------------------------------- /docs/reference/Rplot003.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot003.png -------------------------------------------------------------------------------- /docs/reference/Rplot004.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot004.png -------------------------------------------------------------------------------- /docs/reference/Rplot005.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot005.png -------------------------------------------------------------------------------- /docs/reference/Rplot006.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot006.png -------------------------------------------------------------------------------- /docs/reference/Rplot007.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot007.png -------------------------------------------------------------------------------- /docs/reference/Rplot008.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot008.png -------------------------------------------------------------------------------- /docs/reference/Rplot009.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot009.png -------------------------------------------------------------------------------- /docs/reference/Rplot010.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot010.png -------------------------------------------------------------------------------- /docs/reference/Rplot011.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot011.png -------------------------------------------------------------------------------- /docs/reference/Rplot012.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot012.png -------------------------------------------------------------------------------- /docs/reference/Rplot013.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot013.png -------------------------------------------------------------------------------- /docs/reference/Rplot014.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/Rplot014.png -------------------------------------------------------------------------------- /docs/reference/SE.IQR.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/SE.MAD.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/SE.fisherkurtosis.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/SE.fisherskew.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/SE.gmean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/SE.hmean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/SE.mean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/SE.meanNArm.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/SE.median.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/SE.pearsonskew.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/SE.sd.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/SE.var.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/ShroutFleissICC11.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/ShroutFleissICC1k.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/TMB1964r-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/TMB1964r-1.png -------------------------------------------------------------------------------- /docs/reference/TMB1964r-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/TMB1964r-2.png -------------------------------------------------------------------------------- /docs/reference/TMB1964r-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/TMB1964r-3.png -------------------------------------------------------------------------------- /docs/reference/TMB1964r-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/TMB1964r-4.png -------------------------------------------------------------------------------- /docs/reference/TMB1964r-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/TMB1964r-5.png -------------------------------------------------------------------------------- /docs/reference/bootstrapPI.gmean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/bootstrapPI.hmean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/bootstrapPI.mean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/bootstrapPI.median.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/bootstrapPI.sd.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/bootstrapPI.var.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/bootstrapSE.gmean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/bootstrapSE.hmean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/bootstrapSE.mean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/bootstrapSE.median.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/bootstrapSE.sd.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/bootstrapSE.var.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/custom.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/dataFigure1-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/dataFigure1-1.png -------------------------------------------------------------------------------- /docs/reference/dataFigure2-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/dataFigure2-1.png -------------------------------------------------------------------------------- /docs/reference/dataFigure3-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/dataFigure3-1.png -------------------------------------------------------------------------------- /docs/reference/dataFigure4-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/dataFigure4-1.png -------------------------------------------------------------------------------- /docs/reference/extent.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/fisherkurtosis.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/fisherskew.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/geom_flat_violin-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_flat_violin-1.png -------------------------------------------------------------------------------- /docs/reference/geom_flat_violin-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_flat_violin-2.png -------------------------------------------------------------------------------- /docs/reference/geom_flat_violin-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_flat_violin-3.png -------------------------------------------------------------------------------- /docs/reference/geom_flat_violin-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_flat_violin-4.png -------------------------------------------------------------------------------- /docs/reference/geom_flat_violin-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_flat_violin-5.png -------------------------------------------------------------------------------- /docs/reference/geom_flat_violin-6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_flat_violin-6.png -------------------------------------------------------------------------------- /docs/reference/geom_flat_violin-7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_flat_violin-7.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-1.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-10.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-10.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-11.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-11.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-12.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-12.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-13.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-13.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-14.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-14.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-2.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-3.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-4.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-5.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-6.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-7.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-8.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-8.png -------------------------------------------------------------------------------- /docs/reference/geom_superberrorbar-9.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/geom_superberrorbar-9.png -------------------------------------------------------------------------------- /docs/reference/gmean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/has.cbind.terms.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/has.crange.terms.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/has.nested.terms.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/hmean.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/in.formula.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/is.one.sided.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/makeTransparent-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/makeTransparent-1.png -------------------------------------------------------------------------------- /docs/reference/makeTransparent-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/makeTransparent-2.png -------------------------------------------------------------------------------- /docs/reference/meanNArm,.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/meanNArm.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/pearsonskew.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/precisionMeasureWithCustomDF-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/precisionMeasureWithCustomDF-1.png -------------------------------------------------------------------------------- /docs/reference/precisionMeasureWithCustomDF-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/precisionMeasureWithCustomDF-2.png -------------------------------------------------------------------------------- /docs/reference/showHorizontalSignificance.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/showSignificance-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/showSignificance-1.png -------------------------------------------------------------------------------- /docs/reference/showSignificance-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/showSignificance-2.png -------------------------------------------------------------------------------- /docs/reference/showSignificance-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/showSignificance-3.png -------------------------------------------------------------------------------- /docs/reference/showSignificance-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/showSignificance-4.png -------------------------------------------------------------------------------- /docs/reference/showVerticalSignificance.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/sub.formulas.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -------------------------------------------------------------------------------- /docs/reference/superb-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superb-1.png -------------------------------------------------------------------------------- /docs/reference/superb-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superb-2.png -------------------------------------------------------------------------------- /docs/reference/superb-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superb-3.png -------------------------------------------------------------------------------- /docs/reference/superb-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superb-4.png -------------------------------------------------------------------------------- /docs/reference/superb-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superb-5.png -------------------------------------------------------------------------------- /docs/reference/superb-6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superb-6.png -------------------------------------------------------------------------------- /docs/reference/superb-7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superb-7.png -------------------------------------------------------------------------------- /docs/reference/superbPlot-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot-2.png -------------------------------------------------------------------------------- /docs/reference/superbPlot-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot-3.png -------------------------------------------------------------------------------- /docs/reference/superbPlot-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot-4.png -------------------------------------------------------------------------------- /docs/reference/superbPlot-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot-5.png -------------------------------------------------------------------------------- /docs/reference/superbPlot-6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot-6.png -------------------------------------------------------------------------------- /docs/reference/superbPlot-7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot-7.png -------------------------------------------------------------------------------- /docs/reference/superbPlot-8.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot-8.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.bar-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.bar-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.boxplot-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.boxplot-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.boxplot-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.boxplot-2.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.boxplot-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.boxplot-3.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.boxplot-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.boxplot-4.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.boxplot-5.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.boxplot-5.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.boxplot-6.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.boxplot-6.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.boxplot-7.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.boxplot-7.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.circularline-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.circularline-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.circularlineBand-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.circularlineBand-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.circularpoint-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.circularpoint-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.circularpointjitter-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.circularpointjitter-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.circularpointlinejitter-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.circularpointlinejitter-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.corset-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.corset-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.corset-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.corset-2.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.corset-3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.corset-3.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.corset-4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.corset-4.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.halfwidthline-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.halfwidthline-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.line-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.line-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.lineBand-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.lineBand-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.point-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.point-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.pointindividualline-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.pointindividualline-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.pointjitter-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.pointjitter-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.pointjitterviolin-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.pointjitterviolin-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.pointlinejitter-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.pointlinejitter-1.png -------------------------------------------------------------------------------- /docs/reference/superbPlot.raincloud-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbPlot.raincloud-1.png -------------------------------------------------------------------------------- /docs/reference/superbToWide-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbToWide-1.png -------------------------------------------------------------------------------- /docs/reference/superbToWide-2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/docs/reference/superbToWide-2.png -------------------------------------------------------------------------------- /inst/CITATION: -------------------------------------------------------------------------------- 1 | citHeader("To cite superb version 0.95 in publications use:") 2 | 3 | bibentry( 4 | bibtype = "Article", 5 | title = "Summary plots with adjusted error bars: The superb framework with an implementation in {R}", 6 | author = c("Denis Cousineau", "Marc-Andre Goulet", "Bradley Harding"), 7 | journal = "Advances in Methods and Practices in Psychological Science", 8 | year = "2021", 9 | volume = "4", 10 | number = "3", 11 | pages = "1--46", 12 | url = "https://dcousin3.github.io/superb/", 13 | doi = "10.1177/25152459211035109", 14 | textVersion = paste( 15 | "Cousineau, D., Goulet, M.A., & Harding. B (2021) ", 16 | "Summary plots with adjusted error bars: The superb framework with an implementation in R", 17 | "Advances in Methods and Practices in Psychological Science, doi: https://doi.org/10.1177/25152459211035109" 18 | ) 19 | ) 20 | 21 | citFooter(paste( 22 | "We have invested a lot of time and effort in creating superb.", 23 | "Please cite it when using it. Academic retribution is citation!") 24 | ) -------------------------------------------------------------------------------- /inst/extdata/SPSS_Demo.sav: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/inst/extdata/SPSS_Demo.sav -------------------------------------------------------------------------------- /inst/extdata/Syntax1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/inst/extdata/Syntax1.png -------------------------------------------------------------------------------- /inst/refs/a10.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/allen2019raincloud.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/b12.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/b21.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/c05.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/c17.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/c19.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/c20.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> 10 | asdf faj f``> 11 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/c90.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/cg20.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/cgh21.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/ch19.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/cl16.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/cp34.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/dll17.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/et94.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/f20.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/gc18.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> 10 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/gc19.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/gg58.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/h19.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/h2022.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/hc14.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> 10 | asdf faj f``> 11 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/hc15.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> 10 | asdf faj f``> 11 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/hf76.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/htc14.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/htc15.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/l07.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/l91.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/l99.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/lc23.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/lc23b.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/lm71.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/lm94.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/lt96.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/m08.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/mm09.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/n15.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/nccls00.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/nkm18.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/oc14.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> 10 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/p20.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/pj16.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> 10 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/pl10.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/pw21.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> 10 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/r20.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/rpw19.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/sf79.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/t01.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> 10 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/t12.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/tmb64.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/refs/w11.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/w21.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/w47.dta: -------------------------------------------------------------------------------- 1 | 2 | 3 | asdf faj f``> 4 | asdf faj f``> 5 | asdf faj f``> 6 | asdf faj f``> 7 | asdf faj f``> 8 | asdf faj f``> 9 | asdf faj f``> 10 | asdf faj f``> -------------------------------------------------------------------------------- /inst/refs/w91.dta: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /inst/superbShiny/rsconnect/shinyapps.io/dcousin3/superbshiny.dcf: -------------------------------------------------------------------------------- 1 | name: superbshiny 2 | title: 3 | username: 4 | account: dcousin3 5 | server: shinyapps.io 6 | hostUrl: https://api.shinyapps.io/v1 7 | appId: 4285306 8 | bundleId: 9554519 9 | url: https://dcousin3.shinyapps.io/superbshiny/ 10 | -------------------------------------------------------------------------------- /inst/superbShiny/rsconnect/shinyapps.io/superbplot/superbshiny.dcf: -------------------------------------------------------------------------------- 1 | name: superbshiny 2 | title: 3 | username: 4 | account: superbplot 5 | server: shinyapps.io 6 | hostUrl: https://api.shinyapps.io/v1 7 | appId: 4285306 8 | bundleId: 5895474 9 | url: https://dcousin3.shinyapps.io/superbshiny/ 10 | when: 1652280691.69125 11 | lastSyncTime: 1652280691.69125 12 | -------------------------------------------------------------------------------- /logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/logo.png -------------------------------------------------------------------------------- /man/CousineauLaurencelleLambda.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/CousineauLaurencelleLambda.R 3 | \name{CousineauLaurencelleLambda} 4 | \alias{CousineauLaurencelleLambda} 5 | \title{Cousineau-Laurencelle's lambda correction for cluster-randomized sampling} 6 | \usage{ 7 | CousineauLaurencelleLambda(paramvector) 8 | } 9 | \arguments{ 10 | \item{paramvector}{A vector with, in that order, the intra-class correlation r, 11 | the number of clusters, then the number of participants in all the clusters.} 12 | } 13 | \value{ 14 | lambda the correction factor for cluster-randomized sampling. 15 | } 16 | \description{ 17 | The functions CousineauLaurencelleLambda() returns the correction factor 18 | for cluster-randomized sampling. This correction is then used 19 | in a variety of ways, for example, to get the effective number of 20 | participants (in a power study) or to correct a t-test. 21 | See \insertCite{cl16}{superb}. 22 | } 23 | \examples{ 24 | # Example from Cousineau & Laurencelle, 2017, p. 124: 25 | CousineauLaurencelleLambda( c(0.2, 5, 20, 20, 20, 20, 20) ) 26 | # 2.234188 27 | 28 | } 29 | \references{ 30 | \insertAllCited{} 31 | } 32 | -------------------------------------------------------------------------------- /man/HyunhFeldtEpsilon.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/HyunhFeldtEpsilon.R 3 | \name{HyunhFeldtEpsilon} 4 | \alias{HyunhFeldtEpsilon} 5 | \title{Hyunh and Feldt's epsilon measure of sphericity} 6 | \usage{ 7 | HyunhFeldtEpsilon(dta, cols) 8 | } 9 | \arguments{ 10 | \item{dta}{a data.frame} 11 | 12 | \item{cols}{a vector of column names indicating the relevant 13 | columns on which to compute epsilon. Any other columns are ignored.} 14 | } 15 | \value{ 16 | returns the Hyunh-Feldt estimate of sphericity epsilon 17 | } 18 | \description{ 19 | HyunhFeldtEpsilon() is a measure of sphericity created by 20 | \insertCite{gg58;textual}{superb}. The original measure was biased 21 | and therefore, \insertCite{hf76;textual}{superb} produced a revised version 22 | (note that the 1976 paper contained typos that were uncorrected 23 | in SPSS; \insertCite{l91;textual}{superb}) 24 | } 25 | \references{ 26 | \insertAllCited{} 27 | } 28 | -------------------------------------------------------------------------------- /man/MauchlySphericityTest.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/testMauchlySphericity.R 3 | \name{MauchlySphericityTest} 4 | \alias{MauchlySphericityTest} 5 | \title{Mauchly's test of Sphericity} 6 | \usage{ 7 | MauchlySphericityTest(dta, cols) 8 | } 9 | \arguments{ 10 | \item{dta}{A data frame containing within-subject measures, one participant per line;} 11 | 12 | \item{cols}{A vector indicating the columns containing the measures.} 13 | } 14 | \value{ 15 | p the p-value of the null hypothesis that the data are spherical. 16 | } 17 | \description{ 18 | Performs a test of sphericity on a dataframe with 19 | multiple measures, one subject per line. It assesses the significance of the 20 | null hypothesis that the covariance matrix is spherical. 21 | This test is described in \insertCite{a10}{superb} 22 | } 23 | \examples{ 24 | # creates a small data frames with 4 subject's scores for 5 measures: 25 | dta <- data.frame(cbind( 26 | col1 <- c(3., 6., 2., 2., 5.), 27 | col2 <- c(4., 5., 4., 4., 3.), 28 | col3 <- c(2., 7., 7., 8., 6.), 29 | col4 <- c(6., 8., 4., 6., 5.) 30 | )) 31 | # performs the test (here p = 0.5824) 32 | MauchlySphericityTest(dta) 33 | 34 | } 35 | \references{ 36 | \insertAllCited{} 37 | } 38 | -------------------------------------------------------------------------------- /man/ShroutFleissICC1.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/ShroutFleissICC1k.R 3 | \name{ShroutFleissICC1} 4 | \alias{ShroutFleissICC1} 5 | \alias{ShroutFleissICC11} 6 | \alias{ShroutFleissICC1k} 7 | \title{Shrout and Fleiss intra-class correlation functions} 8 | \usage{ 9 | ShroutFleissICC1(dta, clustercol, cols) 10 | } 11 | \arguments{ 12 | \item{dta}{A data frame containing within-subject measures, one participant per line;} 13 | 14 | \item{clustercol}{is the column index where cluster belonging are given;} 15 | 16 | \item{cols}{A vector indicating the columns containing the measures.} 17 | } 18 | \value{ 19 | ICC the intra-class measure of association. 20 | } 21 | \description{ 22 | The functions ShroutFleissICC1, ShroutFleissICC11 23 | and ShroutFleissICC1k computes the intra-class correlation ICC 24 | for a given data frame containing repeated measures in columns cols 25 | when the measures are in distinct clusters, identified in column clustercol. 26 | See \insertCite{sf79}{superb}. 27 | } 28 | \examples{ 29 | # creates a small data frames with 4 subject's scores for 5 measures: 30 | dta <- data.frame(cbind( 31 | clus <- c(1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3), 32 | col1 <- c(2, 4, 4, 6, 4, 5, 8, 8, 5, 8, 9, 9) 33 | )) 34 | 35 | ShroutFleissICC1(dta, 1, 2) 36 | # 0.434343434 37 | ShroutFleissICC11(dta[, 1], dta[,2]) 38 | # 0.434343434 39 | 40 | dta2 <- data.frame(cbind( 41 | clus <- c(1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3), 42 | col1 <- c(1, 3, 3, 5, 3, 4, 7, 7, 4, 7, 8, 8), 43 | col1 <- c(2, 4, 4, 6, 4, 5, 8, 8, 5, 8, 9, 9), 44 | col1 <- c(3, 5, 5, 7, 5, 6, 9, 9, 6, 9, 10, 10) 45 | )) 46 | 47 | ShroutFleissICC1(dta2, 1, 2:4) 48 | # 0.7543859649 49 | ShroutFleissICC1k(dta2[, 1], dta2[,2:4]) 50 | # 0.7543859649 51 | 52 | } 53 | \references{ 54 | \insertAllCited{} 55 | 56 | \insertAllCited{} 57 | } 58 | -------------------------------------------------------------------------------- /man/WelchDegreeOfFreedom.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/WelchDegreeOfFreedom.R 3 | \name{WelchDegreeOfFreedom} 4 | \alias{WelchDegreeOfFreedom} 5 | \title{Welch's rectified degree of freedom} 6 | \usage{ 7 | WelchDegreeOfFreedom(dta, cols, groupingcols) 8 | } 9 | \arguments{ 10 | \item{dta}{A data frame containing within-subject measures, one participant per line;} 11 | 12 | \item{cols}{A vector indicating the columns containing the measures.} 13 | 14 | \item{groupingcols}{A vector indicating the columns containing the groups.} 15 | } 16 | \value{ 17 | df the degrees of freedom rectified according to Welch (1947). 18 | } 19 | \description{ 20 | When variance across groups are heterogeneous, 21 | the Student \code{t} distribution with \code{n - 1} df is not the exact distribution. 22 | However, \insertCite{w47}{superb}, using methods of moments, was able to find the 23 | best-fitting \code{t} distribution. This distribution has degree of freedom reduced 24 | based on the sample sizes and the variances of the group tests. The present 25 | function returns the rectified degree of freedom 26 | } 27 | \examples{ 28 | # creates a small data frame with 4 subject's scores for 5 measures: 29 | dta <- data.frame(cbind( 30 | DV.1 = c(3., 6., 2., 2., 5.), 31 | DV.2 = c(4., 5., 4., 4., 3.), 32 | DV.3 = c(2., 7., 7., 8., 6.), 33 | DV.4 = c(6., 8., 4., 6., 5.), 34 | grp = c(1., 1., 2., 2., 2.) 35 | )) 36 | # performs the test (here rectified df = 1.898876) 37 | WelchDegreeOfFreedom(dta, "DV.1","grp") 38 | 39 | } 40 | \references{ 41 | \insertAllCited{} 42 | } 43 | -------------------------------------------------------------------------------- /man/WinerCompoundSymmetryTest.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/testWinerCompoundSymmetry.R 3 | \name{WinerCompoundSymmetryTest} 4 | \alias{WinerCompoundSymmetryTest} 5 | \title{Winer's test of compound symmetry} 6 | \usage{ 7 | WinerCompoundSymmetryTest(dta, cols) 8 | } 9 | \arguments{ 10 | \item{dta}{A data frame containing within-subject measures, one participant per line;} 11 | 12 | \item{cols}{A vector indicating the columns containing the measures.} 13 | } 14 | \value{ 15 | p the p-value of the null hypothesis that the data are compound symmetric. 16 | } 17 | \description{ 18 | Run a test of compound symmetry. 19 | generates a data frame of random data suitable for analyses. 20 | It assesses the significance of the null hypothesis that 21 | the covariance matrix is compound symmetric. 22 | This test is given without demonstration in 23 | \insertCite{w91}{superb}, p. 517. 24 | } 25 | \examples{ 26 | # creates a small data frames with 4 subject's scores for 5 measures: 27 | dta <- data.frame(cbind( 28 | col1 <- c(3., 6., 2., 2., 5.), 29 | col2 <- c(4., 5., 4., 4., 3.), 30 | col3 <- c(2., 7., 7., 8., 6.), 31 | col4 <- c(6., 8., 4., 6., 5.) 32 | )) 33 | # performs the test (here p = 0.6733) 34 | WinerCompoundSymmetryTest(dta) 35 | 36 | } 37 | \references{ 38 | \insertAllCited{} 39 | } 40 | -------------------------------------------------------------------------------- /man/biasCorrectionTransform.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/functionsTransformation.R 3 | \name{biasCorrectionTransform} 4 | \alias{biasCorrectionTransform} 5 | \title{bias-correction transform} 6 | \usage{ 7 | biasCorrectionTransform(dta, variables) 8 | } 9 | \arguments{ 10 | \item{dta}{a data.frame containing the data in wide format;} 11 | 12 | \item{variables}{a vector of column names on which the transformation will be applied. 13 | the remaining columns will be left unchanged} 14 | } 15 | \value{ 16 | a data.frame of the same form as dta with the variables transformed. 17 | 18 | This function is useful when passed to the argument \code{preprocessfct} of \code{superb()} 19 | where it performs a modification of the data matrix. 20 | } 21 | \description{ 22 | \code{biasCorrectionTransform} is a transformation that can 23 | be applied to a matrix of data. The resulting matrix's variance 24 | is corrected for bias \insertCite{m08}{superb} 25 | } 26 | \references{ 27 | \insertAllCited{} 28 | } 29 | -------------------------------------------------------------------------------- /man/dataFigure1.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/dataFigure1.R 3 | \docType{data} 4 | \name{dataFigure1} 5 | \alias{dataFigure1} 6 | \title{Data for Figure 1} 7 | \format{ 8 | An object of class data.frame. 9 | } 10 | \source{ 11 | \doi{10.5709/acp-0214-z} 12 | } 13 | \usage{ 14 | data(dataFigure1) 15 | } 16 | \description{ 17 | The data, taken from \insertCite{c17}{superb}, is an example where the 18 | "stand-alone" 95\\\% confidence interval of the means returns 19 | a result in contradiction with the result of a statistical test. 20 | The paradoxical result is resolved by using adjusted confidence intervals, 21 | here the different-adjusted confidence interval. 22 | } 23 | \examples{ 24 | library(ggplot2) 25 | library(gridExtra) 26 | data(dataFigure1) 27 | 28 | options(superb.feedback = 'none') # shut down 'warnings' and 'design' interpretation messages 29 | 30 | ## realize the plot with unadjusted (left) and ajusted (right) 95\% confidence intervals 31 | plt1a <- superb( 32 | score ~ grp, 33 | dataFigure1, 34 | adjustments=list(purpose = "single"), 35 | plotLayout="bar" ) + 36 | xlab("Group") + ylab("Score") + labs(title="95\% CI\n") + 37 | coord_cartesian( ylim = c(85,115) ) + 38 | geom_hline(yintercept = 100, colour = "black", linewidth = 0.5, linetype=2) 39 | plt1b <- superb( 40 | score ~ grp, 41 | dataFigure1, 42 | adjustments=list(purpose = "difference"), 43 | plotLayout="bar" ) + 44 | xlab("Group") + ylab("Score") + labs(title="Difference-adjusted 95\% CI\n") + 45 | coord_cartesian( ylim = c(85,115) ) + 46 | geom_hline(yintercept = 100, colour = "black", linewidth = 0.5, linetype=2) 47 | plt1 <- grid.arrange(plt1a,plt1b,ncol=2) 48 | 49 | ## realise the correct t-test to see the discrepancy 50 | t.test(dataFigure1$score[dataFigure1$grp==1], 51 | dataFigure1$score[dataFigure1$grp==2], 52 | var.equal=TRUE) 53 | 54 | } 55 | \references{ 56 | \insertAllCited{} 57 | } 58 | \keyword{datasets} 59 | -------------------------------------------------------------------------------- /man/dataFigure2.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/dataFigure2.R 3 | \docType{data} 4 | \name{dataFigure2} 5 | \alias{dataFigure2} 6 | \title{Data for Figure 2} 7 | \format{ 8 | An object of class data.frame. 9 | } 10 | \source{ 11 | \doi{10.5709/acp-0214-z} 12 | } 13 | \usage{ 14 | data(dataFigure2) 15 | } 16 | \description{ 17 | The data, taken from \insertCite{c17}{superb}7, is an example 18 | where the 19 | "stand-alone" 95\\\% confidence interval of the means returns 20 | a result in contradiction with the result of a statistical test. 21 | The paradoxical result is resolved by using adjusted confidence intervals, 22 | here the correlation- and different-adjusted confidence interval. 23 | } 24 | \examples{ 25 | library(ggplot2) 26 | library(gridExtra) 27 | data(dataFigure2) 28 | 29 | options(superb.feedback = 'none') # shut down 'warnings' and 'design' interpretation messages 30 | 31 | ## realize the plot with unadjusted (left) and ajusted (right) 95\% confidence intervals 32 | plt2a <- superb( 33 | cbind(pre, post) ~ ., 34 | dataFigure2, 35 | WSFactors = "Moment(2)", 36 | adjustments=list(purpose = "difference"), 37 | plotLayout="bar" ) + 38 | xlab("Group") + ylab("Score") + labs(title="Difference-adjusted 95\% CI\n") + 39 | coord_cartesian( ylim = c(85,115) ) + 40 | geom_hline(yintercept = 100, colour = "black", linewidth = 0.5, linetype=2) 41 | plt2b <- superb( 42 | cbind(pre, post) ~ ., 43 | dataFigure2, 44 | WSFactors = "Moment(2)", 45 | adjustments=list(purpose = "difference", decorrelation = "CA"), 46 | plotLayout="bar" ) + 47 | xlab("Group") + ylab("Score") + labs(title="Correlation and difference-adjusted\n95\% CI") + 48 | coord_cartesian( ylim = c(85,115) ) + 49 | geom_hline(yintercept = 100, colour = "black", linewidth = 0.5, linetype=2) 50 | plt2 <- grid.arrange(plt2a,plt2b,ncol=2) 51 | 52 | ## realise the correct t-test to see the discrepancy 53 | t.test(dataFigure2$pre, dataFigure2$post, paired=TRUE) 54 | 55 | } 56 | \references{ 57 | \insertAllCited{} 58 | } 59 | \keyword{datasets} 60 | -------------------------------------------------------------------------------- /man/dataFigure4.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/dataFigure4.R 3 | \docType{data} 4 | \name{dataFigure4} 5 | \alias{dataFigure4} 6 | \title{Data for Figure 4} 7 | \format{ 8 | An object of class data.frame. 9 | } 10 | \source{ 11 | \doi{10.5709/acp-0214-z} 12 | } 13 | \usage{ 14 | data(dataFigure4) 15 | } 16 | \description{ 17 | The data, inspired from \insertCite{c17}{superb}, shows an example where the 18 | "stand-alone" 95\\% confidence interval of the means returns 19 | a result in contradiction with the result of a statistical test. 20 | The paradoxical result is resolved by using adjusted confidence intervals, 21 | here the population size-adjusted confidence interval. 22 | } 23 | \examples{ 24 | library(ggplot2) 25 | library(gridExtra) 26 | data(dataFigure4) 27 | 28 | options(superb.feedback = 'none') # shut down 'warnings' and 'design' interpretation messages 29 | 30 | ## realize the plot with unadjusted (left) and ajusted (right) 95\% confidence intervals 31 | plt4a = superb( 32 | score ~ group, 33 | dataFigure4, 34 | adjustments=list(purpose = "single", popSize = Inf), 35 | plotLayout="bar" ) + 36 | xlab("Group") + ylab("Score") + labs(title="Difference-adjusted 95\% CI\n") + 37 | coord_cartesian( ylim = c(85,115) ) + 38 | geom_hline(yintercept = 100, colour = "black", linewidth = 0.5, linetype=2) 39 | plt4b = superb( 40 | score ~ group, 41 | dataFigure4, 42 | adjustments=list(purpose = "single", popSize = 50 ), 43 | plotLayout="bar" ) + 44 | xlab("Group") + ylab("Score") + labs(title="Population size and difference-\nadjusted 95\% CI") + 45 | coord_cartesian( ylim = c(85,115) ) + 46 | geom_hline(yintercept = 100, colour = "black", linewidth = 0.5, linetype=2) 47 | plt4 = grid.arrange(plt4a,plt4b,ncol=2) 48 | 49 | ## realise the correct t-test to see the discrepancy 50 | res = t.test(dataFigure4$score, mu=100) 51 | tcorr = res$statistic /sqrt(1-25/50) 52 | pcorr = 1-pt(tcorr,24) 53 | c(tcorr, pcorr) 54 | 55 | 56 | } 57 | \references{ 58 | \insertAllCited{} 59 | } 60 | \keyword{datasets} 61 | -------------------------------------------------------------------------------- /man/is.formula.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/functionsFormulas.R 3 | \name{is.formula} 4 | \alias{is.formula} 5 | \alias{is.one.sided} 6 | \alias{has.nested.terms} 7 | \alias{has.cbind.terms} 8 | \alias{has.crange.terms} 9 | \alias{in.formula} 10 | \alias{sub.formulas} 11 | \title{logical functions for formulas} 12 | \usage{ 13 | is.formula(frm) 14 | 15 | is.one.sided(frm) 16 | 17 | has.nested.terms(frm) 18 | 19 | has.cbind.terms(frm) 20 | 21 | has.crange.terms(frm) 22 | 23 | in.formula(frm, whatsym) 24 | 25 | sub.formulas(frm, head) 26 | } 27 | \arguments{ 28 | \item{frm}{a formula;} 29 | 30 | \item{whatsym}{a symbol to search in the formula;} 31 | 32 | \item{head}{the beginning of a sub-formula to extract} 33 | } 34 | \value{ 35 | \code{is.formula(frm)}, \code{has.nested.terms(frm)}, 36 | \code{has.crange.terms(frm)} and \code{has.cbind.terms(frm)} 37 | returns TRUE if frm is a formula, contains a \code{|} or a 38 | \code{crange} or a \code{cbind} respectively; 39 | \code{in.formula(frm, whatsym)} returns TRUE if the symbol \code{whatsym} is somewhere in 'frm'; 40 | \code{sub.formulas(frm, head)} returns a list of all the sub-formulas which contains \code{head}. 41 | } 42 | \description{ 43 | The functions \code{is.formula()}, 44 | \code{is.one.sided()}, \code{has.nested.terms()}, 45 | \code{has.cbind.terms()}, \code{has.crange.terms()}, 46 | \code{in.formula()} and \code{sub.formulas()} 47 | performs checks or extract sub-formulas from a given formula. 48 | } 49 | \details{ 50 | These formulas are for internal use. 51 | } 52 | \examples{ 53 | is.formula( Frequency ~ Intensity * Pitch ) 54 | 55 | has.nested.terms( Level ~ Factor | Level ) 56 | 57 | has.cbind.terms( Frequency ~ cbind(Low,Medium,High) * cbind(Soft, Hard) ) 58 | 59 | has.crange.terms( Frequency ~ crange(Low,High) * cbind(Soft, Hard) ) 60 | 61 | in.formula( Frequency ~ Intensity * Pitch, "Pitch" ) 62 | 63 | sub.formulas( Frequency ~ cbind(Low,Medium,High) * cbind(Soft, Hard), "cbind" ) 64 | 65 | 66 | 67 | } 68 | -------------------------------------------------------------------------------- /man/makeTransparent.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/makeTransparent.R 3 | \name{makeTransparent} 4 | \alias{makeTransparent} 5 | \title{makes ggplots with transparent elements} 6 | \usage{ 7 | makeTransparent() 8 | } 9 | \value{ 10 | does not return anything; set the elements to transparent. 11 | } 12 | \description{ 13 | makeTransparent is an extension to ggplots 14 | which makes all the elements of the plot transparent 15 | except the data being displayed. This is useful to 16 | superimpose multiple plots, e.g. to generate plots with 17 | multiple error bars for example. 18 | } 19 | \examples{ 20 | 21 | # make a basic plot 22 | superb(len ~ dose + supp, ToothGrowth ) 23 | # make a basic plot with transparent elements 24 | superb(len ~ dose + supp, ToothGrowth, 25 | ) + makeTransparent() 26 | 27 | } 28 | -------------------------------------------------------------------------------- /man/measuresWithMissingData.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/functionsStatistical.R 3 | \name{measuresWithMissingData} 4 | \alias{measuresWithMissingData} 5 | \alias{meanNArm} 6 | \alias{meanNArm,} 7 | \alias{SE.meanNArm} 8 | \alias{CI.meanNArm} 9 | \title{Measures with missing data} 10 | \usage{ 11 | meanNArm(x) 12 | 13 | SE.meanNArm(x) 14 | 15 | CI.meanNArm(x, gamma) 16 | } 17 | \arguments{ 18 | \item{x}{a vector of numbers, the sample data (mandatory);} 19 | 20 | \item{gamma}{a confidence level for CI (default 0.95).} 21 | } 22 | \value{ 23 | the means, a measure of precision (SE) or an interval of precision 24 | (CI) in the presence of missing data. 25 | } 26 | \description{ 27 | The following three functions can be used with missing data. 28 | They return the mean, the standard error of the mean and the confidence 29 | interval of the mean.Note that we hesitated to provide these functions: you 30 | should deal with missing data prior to making your plot. 31 | Removing NAs from the mean in a univariate setting is equivalent to performing 32 | mean imputation. See @enwiki:1243866876 for more. 33 | Also note that for repeated-measure design, only CA adjustment is available. 34 | } 35 | \examples{ 36 | # the confidence interval of the mean for default 95\% and 90\% confidence level 37 | meanNArm( c(1,2,3, NA) ) 38 | SE.meanNArm( c(1,2,3, NA) ) 39 | CI.meanNArm( c(1,2,3, NA) ) 40 | CI.meanNArm( c(1,2,3, NA), gamma = 0.90) 41 | 42 | } 43 | \references{ 44 | \insertAllCited{} 45 | } 46 | -------------------------------------------------------------------------------- /man/poolSDTransform.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/functionsTransformation.R 3 | \name{poolSDTransform} 4 | \alias{poolSDTransform} 5 | \title{pooled standard deviation transform} 6 | \usage{ 7 | poolSDTransform(dta, variables) 8 | } 9 | \arguments{ 10 | \item{dta}{a data.frame containing the data in wide format;} 11 | 12 | \item{variables}{a vector of column names on which the transformation will be applied. 13 | the remaining columns will be left unchanged} 14 | } 15 | \value{ 16 | a data.frame of the same form as dta with the variables transformed. 17 | 18 | This function is useful when passed to the argument \code{preprocessfct} of \code{superb()} 19 | where it performs a modification of the data matrix. 20 | } 21 | \description{ 22 | \code{poolSDTransform} is a transformations that can 23 | be applied to a matrix of data. The resulting matrix has the column- 24 | standard deviations equal to the pool standard deviations of the 25 | individual columns, the solution adopted by \insertCite{lm94}{superb}. 26 | } 27 | \references{ 28 | \insertAllCited{} 29 | } 30 | -------------------------------------------------------------------------------- /man/runDebug.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/runDebug.R 3 | \name{runDebug} 4 | \alias{runDebug} 5 | \title{runDebug} 6 | \usage{ 7 | runDebug(where, title, vars, vals) 8 | } 9 | \arguments{ 10 | \item{where}{indicates where in the program runDebug was called} 11 | 12 | \item{title}{string text to be displayed when this function is triggered} 13 | 14 | \item{vars}{strings names of the variables to be placed in the global environment} 15 | 16 | \item{vals}{numeric values to be given to the variables.} 17 | } 18 | \value{ 19 | puts in the globalenvironment the variables named "vars" 20 | } 21 | \description{ 22 | runDebug is an internal function used by GRD and superb 23 | to help in debugging the functions. It assigns in the global environment 24 | the variables that are local to a function so that they become visible. 25 | Use \code{options("superb.feedback" = "all")} to turn all debug on. 26 | 27 | The default values to the option "superb.feedback" is c("design","warnings","summary","experimental") 28 | where the four entries allow: 29 | \itemize{ 30 | \item design: (in superbPlot) showing information on how the within-subject variables are understood; 31 | \item warnings: (in superbPlot) returning 'FYI' messages about the data to help decide if 32 | the appropriate error bars were used 33 | \item summary: (in GRD) showing a recapitulation of the design; 34 | \item experimental: (in superbPlot) showing a message if experimental features are used. This last 35 | feedback information is currently not inhibited but will be in future versions. 36 | } 37 | } 38 | -------------------------------------------------------------------------------- /man/slope.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/grd.R 3 | \name{slope} 4 | \alias{slope} 5 | \alias{extent} 6 | \alias{custom} 7 | \alias{Rexpression} 8 | \title{Effect description} 9 | \usage{ 10 | slope(s) 11 | 12 | extent(s) 13 | 14 | custom(...) 15 | 16 | Rexpression(str) 17 | } 18 | \arguments{ 19 | \item{s}{the size of the effect} 20 | 21 | \item{...}{a sequence with the sizes of the effects} 22 | 23 | \item{str}{R code string} 24 | } 25 | \value{ 26 | These internal functions are not meant to be used in 27 | isolation in any meaningful way... 28 | } 29 | \description{ 30 | There is four ways that effects can be defined 31 | in GRD. `"factor" = slope(s)` will vary the means by an amount of s for 32 | each step of the factor; `"factor" = extent(s)` will vary the means 33 | uniformly so that there is a difference of s between the first and 34 | the last factor level; `"factor" = custom(a,b,c..)` will alter each 35 | means by an amount of a for the first, b for the second, etc. Finally 36 | `"factor" = Rexpression("R code")` will apply R code to all levels of 37 | the factors, altering the base mean. 38 | } 39 | -------------------------------------------------------------------------------- /man/subjectCenteringTransform.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/functionsTransformation.R 3 | \name{subjectCenteringTransform} 4 | \alias{subjectCenteringTransform} 5 | \title{subject-centering transform} 6 | \usage{ 7 | subjectCenteringTransform(dta, variables) 8 | } 9 | \arguments{ 10 | \item{dta}{a data.frame containing the data in wide format;} 11 | 12 | \item{variables}{a vector of column names on which the transformation will be applied. 13 | the remaining columns will be left unchanged} 14 | } 15 | \value{ 16 | a data.frame of the same form as dta with the variables transformed. 17 | 18 | This function is useful when passed to the argument \code{preprocessfct} of \code{superb()} 19 | where it performs a modification of the data matrix. 20 | } 21 | \description{ 22 | \code{subjectCenteringTransform} is a transformation that can 23 | be applied to a matrix of data. the resulting matrix have means 24 | that are centered on the grand mean, subject-wise \insertCite{c05}{superb}. 25 | } 26 | \references{ 27 | \insertAllCited{} 28 | } 29 | -------------------------------------------------------------------------------- /man/summaryStatistics.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/functionsStatistical.R 3 | \name{summaryStatistics} 4 | \alias{summaryStatistics} 5 | \alias{hmean} 6 | \alias{gmean} 7 | \alias{MAD} 8 | \alias{fisherskew} 9 | \alias{pearsonskew} 10 | \alias{fisherkurtosis} 11 | \title{Additional summary statistics} 12 | \usage{ 13 | hmean(x) 14 | 15 | gmean(x) 16 | 17 | MAD(x) 18 | 19 | fisherskew(x) 20 | 21 | pearsonskew(x) 22 | 23 | fisherkurtosis(x) 24 | } 25 | \arguments{ 26 | \item{x}{a vector of numbers, the sample data (mandatory);} 27 | } 28 | \value{ 29 | a summary statistic describing the sample. 30 | } 31 | \description{ 32 | superb adds a few summary statistics that can 33 | be used to characterize a dataset. All comes with \code{SE.fct()} and \code{CI.fct()}. 34 | See \insertCite{htc14,htc15}{superb} for more. 35 | \emph{superbPlot-compatible} summary statistics functions must have one parameter: 36 | } 37 | \examples{ 38 | # the confidence interval of the mean for default 95\% and 90\% confidence level 39 | gmean( c(1,2,3) ) # the geometric mean; also available in psych::geometric.mean 40 | hmean( c(1,2,3) ) # the harmonic mean; also available in psych::harmonic.mean 41 | MAD( c(1,2,3) ) # the median absolute deviation to the median (not the same as mad) 42 | fisherskew( c(1,2,3) ) # the Fisher skew corrected for sample size 43 | fisherkurtosis( c(1,2,3) ) # the Fisher kurtosis corrected for sample size 44 | pearsonskew( c(1,2,3) ) # the Pearson skew 45 | 46 | } 47 | \references{ 48 | \insertAllCited{} 49 | } 50 | -------------------------------------------------------------------------------- /man/superbShiny.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/superbShiny.R 3 | \name{superbShiny} 4 | \alias{superbShiny} 5 | \title{User Interface to get summary plot of any statistics with adjusted error bars.} 6 | \usage{ 7 | superbShiny(graphicDirectives = NULL) 8 | } 9 | \arguments{ 10 | \item{graphicDirectives}{(optional) used to set graphic directives from the command line. 11 | This is useful for in-class demonstrations where the ylim() range should be set before 12 | reaching the last step of the GIU.} 13 | } 14 | \value{ 15 | A plot that can be cut-and-paste. 16 | } 17 | \description{ 18 | The function \code{suberbShiny()} provides a simple user interface 19 | to plot standard error or confidence interval for various descriptive 20 | statistics under various designs, population size and purposes, 21 | according to the \code{suberb} framework. See \insertCite{cgh21}{superb} for more. 22 | Also see this \href{https://www.youtube.com/watch?v=rw_6ll5nVus/}{video} 23 | from \insertCite{w21}{superb} for a demo using 24 | the shinyapps.io installation accessible at 25 | \href{https://dcousin3.shinyapps.io/superbshiny/}{dcousin3.shinyapps.io/superbshiny} 26 | Limitations: it is not possible to use custom-made statistics with the 27 | graphical user interface, nor is it possible to request an adjustment for cluster- 28 | randomized sampling. These options are available with \code{superb()}. 29 | } 30 | \examples{ 31 | # Launch the user interface: 32 | \donttest{ 33 | if (interactive()) 34 | superbShiny() 35 | } 36 | 37 | } 38 | \references{ 39 | \insertAllCited{} 40 | } 41 | -------------------------------------------------------------------------------- /man/twoStepTransform.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/functionsTransformation.R 3 | \name{twoStepTransform} 4 | \alias{twoStepTransform} 5 | \title{two-step transform for subject centering and bias correction} 6 | \usage{ 7 | twoStepTransform(dta, variables) 8 | } 9 | \arguments{ 10 | \item{dta}{a data.frame containing the data in wide format;} 11 | 12 | \item{variables}{a vector of column names on which the transformation will be applied. 13 | the remaining columns will be left unchanged} 14 | } 15 | \value{ 16 | a data.frame of the same form as dta with the variables transformed. 17 | 18 | This function is useful when passed to the argument \code{preprocessfct} of \code{superb()} 19 | where it performs a modification of the data matrix. 20 | } 21 | \description{ 22 | \code{twoStepTransform} is a transformation that can 23 | be applied to a matrix of data. The resulting matrix is both 24 | subject-centered and bias corrected, a technique called 25 | the CM technique \insertCite{b12,c05,m08}{superb} 26 | } 27 | \references{ 28 | \insertAllCited{} 29 | } 30 | -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/pkgdown/favicon/apple-touch-icon-120x120.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/pkgdown/favicon/apple-touch-icon-152x152.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-180x180.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/pkgdown/favicon/apple-touch-icon-180x180.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/pkgdown/favicon/apple-touch-icon-60x60.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/pkgdown/favicon/apple-touch-icon-76x76.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/pkgdown/favicon/apple-touch-icon.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/pkgdown/favicon/favicon-16x16.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/pkgdown/favicon/favicon-32x32.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dcousin3/superb/dd0dbe09f89ac4c0491074a8a3df968cc4e2dae1/pkgdown/favicon/favicon.ico -------------------------------------------------------------------------------- /tests/testthat.R: -------------------------------------------------------------------------------- 1 | library(testthat) 2 | test_check("superb") -------------------------------------------------------------------------------- /tests/testthat/test_compatibility.R: -------------------------------------------------------------------------------- 1 | context("Testing compatibility of suberbPlot() with other structures") 2 | 3 | 4 | test_that("TESTS (1/1)", { 5 | old <- options() 6 | on.exit(options(old)) 7 | options("superb.feedback" = 'none') #shut down all superb-generated messages 8 | 9 | suppressWarnings(library(superb)) 10 | suppressWarnings(library(tibble)) 11 | 12 | # Motivation data for 15 participants over three weeks in wide format: 13 | tib <- matrix( c( 14 | 45, 50, 59, 15 | 47, 58, 64, 16 | 53, 63, 72, 17 | 57, 64, 81, 18 | 58, 67, 86, 19 | 61, 70, 98, 20 | 61, 75, 104, 21 | 63, 79, 100, 22 | 63, 79, 84, 23 | 71, 81, 96, 24 | 72, 83, 82, 25 | 74, 84, 82, 26 | 76, 86, 93, 27 | 84, 90, 85, 28 | 90, 96, 89 29 | ), ncol=3, byrow=T) 30 | 31 | # put column names then convert to tibble: 32 | colnames(tib) <- c("Week 1", "Week 2", "Week 3") 33 | tib <- as_tibble(tib) 34 | 35 | # Superb throws an error when the data frame is a tibble 36 | plt <- superbPlot(tib, 37 | WSFactors = "Moment(3)", 38 | variables = c("Week 1", "Week 2", "Week 3"), 39 | adjustments = list(purpose = "difference"), 40 | plotStyle="line" 41 | ) 42 | expect_equal( "ggplot" %in% class(plt), TRUE) 43 | 44 | dta <- superbData(tib, 45 | WSFactors = "Moment(3)", 46 | variables = c("Week 1", "Week 2", "Week 3"), 47 | adjustments = list(purpose = "difference") 48 | ) 49 | expect_equal( "list" %in% class(dta), TRUE) 50 | expect_output( str(dta), "List of 2") 51 | 52 | 53 | # restores default information 54 | options("superb.feedback" = c('design','warnings','summary')) 55 | 56 | }) -------------------------------------------------------------------------------- /tests/testthat/test_deprecated.R: -------------------------------------------------------------------------------- 1 | context("Testing deprecated arguments") 2 | 3 | 4 | test_that("TESTS deprecate plotStyle", { 5 | old <- options() 6 | on.exit(options(old)) 7 | options("superb.feedback" = 'none') #shut down all superb-generated messages 8 | 9 | suppressWarnings(library(superb)) 10 | 11 | # Motivation data for 15 participants over three weeks in wide format: 12 | dta <- matrix( c( 13 | 45, 50, 59, 14 | 47, 58, 64, 15 | 53, 63, 72, 16 | 57, 64, 81, 17 | 58, 67, 86, 18 | 61, 70, 98, 19 | 61, 75, 104, 20 | 63, 79, 100, 21 | 63, 79, 84, 22 | 71, 81, 96, 23 | 72, 83, 82, 24 | 74, 84, 82, 25 | 76, 86, 93, 26 | 84, 90, 85, 27 | 90, 96, 89 28 | ), ncol=3, byrow=T) 29 | colnames(dta) <- c("W1", "W2", "W3") 30 | 31 | # Superb throws a message with the deprecated plotStyle argument 32 | expect_message( plt <- superb(cbind(W1,W2,W3) ~ ., dta, 33 | WSFactors = "Moment(3)", 34 | adjustments = list(purpose = "difference"), 35 | plotStyle = "line" 36 | ) ) 37 | expect_equal( "ggplot" %in% class(plt), TRUE) 38 | 39 | expect_message( plt <- superbPlot(dta, 40 | WSFactors = "Moment(3)", 41 | variables = c("W1", "W2", "W3"), 42 | adjustments = list(purpose = "difference"), 43 | plotStyle = "line" 44 | ) ) 45 | expect_equal( "ggplot" %in% class(plt), TRUE) 46 | 47 | plt <- superb(cbind(W1,W2,W3) ~ ., dta, 48 | WSFactors = "Moment(3)", 49 | adjustments = list(purpose = "difference"), 50 | plotLayout = "line" 51 | ) 52 | expect_equal( "ggplot" %in% class(plt), TRUE) 53 | 54 | 55 | # restores default information 56 | options("superb.feedback" = c('design','warnings','summary')) 57 | 58 | }) -------------------------------------------------------------------------------- /tests/testthat/test_experimental.R: -------------------------------------------------------------------------------- 1 | context("Testing experimental features") 2 | 3 | 4 | test_that("TESTS namespace::function in statistical functions", { 5 | old <- options() 6 | on.exit(options(old)) 7 | options("superb.feedback" = 'none') #shut down all superb-generated messages 8 | 9 | # whatever data set dta 10 | dta2 <- GRD( WSFactors = c("Moment(W1,W2,W3)") ) 11 | 12 | # Superb throws a message if namespaces do not match 13 | expect_message( plt1 <- superb(cbind(DV.W1, DV.W2, DV.W3) ~ ., dta2, 14 | WSFactors = "Moment(3)", 15 | statistic = "base::mean", 16 | errorbar = "toto::CI" 17 | ) ) 18 | expect_equal( "ggplot" %in% class(plt1), TRUE) 19 | 20 | # throws an error if the function does not exists 21 | expect_error( plt2 <- superb(cbind(DV.W1, DV.W2, DV.W3) ~ ., dta2, 22 | WSFactors = "Moment(3)", 23 | statistic = "calisson::mean", 24 | errorbar = "CI" 25 | ) ) 26 | 27 | # using functions located in a namespace specifically 28 | # REMOVED: too sensitive 29 | # require(rlang) 30 | # rlang::env_unlock(asNamespace("superb")) 31 | # assign('fctXXX', function(x) mean(x), asNamespace("superb") ) 32 | # assign('init.fctXXX', function(x) return(0), asNamespace("superb") ) 33 | # assign('CI.fctXXX', function(x, gamma) CI.mean(x, gamma = .95), asNamespace("superb") ) 34 | 35 | # expect_message( plt3 <- superb(cbind(DV.W1, DV.W2, DV.W3) ~ ., dta2, 36 | # WSFactors = "Moment(3)", 37 | # statistic = "superb::fctXXX", 38 | # errorbar = "CI", 39 | # gamma = 0.66 40 | # ) ) 41 | # expect_equal( "ggplot" %in% class(plt3), TRUE) 42 | # detach("package:rlang", unload = TRUE) 43 | 44 | # restores default information 45 | options("superb.feedback" = c('design','warnings','summary')) 46 | 47 | }) -------------------------------------------------------------------------------- /tests/testthat/test_missingData.R: -------------------------------------------------------------------------------- 1 | context("Testing missing data") 2 | 3 | 4 | test_that("Between-subject design", { 5 | old <- options() 6 | on.exit(options(old)) 7 | options("superb.feedback" = 'none') 8 | 9 | library(ggplot2) 10 | 11 | dataToPlotBS <- GRD( BSFactors="grp(2)", 12 | SubjectsPerGroup = 1000, 13 | Effects = list("grp" = slope(10) ), 14 | Population=list(mean=100, stddev=15), 15 | Contaminant=list(scores = "NA", proportion=0.2) 16 | ) 17 | pltB <- superbPlot(dataToPlotBS, 18 | BSFactors = "grp", 19 | variables = "DV", 20 | statistic = "meanNArm", # because of missing data 21 | adjustments = list( 22 | purpose = "difference", 23 | decorrelation = "none" 24 | ) 25 | ) + coord_cartesian(ylim=c(85,115)) 26 | 27 | expect_equal( "ggplot" %in% class(pltB), TRUE) 28 | # restores default information 29 | options("superb.feedback" = c('design','warnings','summary')) 30 | }) 31 | 32 | 33 | test_that("Within-subject design", { 34 | old <- options() 35 | on.exit(options(old)) 36 | options("superb.feedback" = 'none') 37 | 38 | library(ggplot2) 39 | 40 | dataToPlotWS <- GRD( WSFactors="moment(2)", 41 | SubjectsPerGroup = 1000, 42 | Effects = list("moment" = slope(10) ), 43 | Population=list(mean=100, stddev=15, rho=0.80), 44 | Contaminant=list(scores = "NA", proportion=0.2) 45 | ) 46 | pltW <- superbPlot(dataToPlotWS, 47 | WSFactors = "moment(2)", 48 | variables = c("DV.1","DV.2"), 49 | statistic = "meanNArm", # because of missing data 50 | adjustments = list( 51 | purpose = "difference", 52 | decorrelation = "CA" 53 | ) 54 | ) + coord_cartesian(ylim=c(85,115)) 55 | 56 | expect_equal( "ggplot" %in% class(pltW), TRUE) 57 | # restores default information 58 | options("superb.feedback" = c('design','warnings','summary')) 59 | }) 60 | 61 | --------------------------------------------------------------------------------