├── .dockerignore ├── .gitignore ├── Dockerfile ├── LICENSE.md ├── README.md ├── backend ├── .ipynb_checkpoints │ ├── sample_sequences_scores-checkpoint.csv │ ├── score_new_sequences-checkpoint.ipynb │ └── score_new_sequences-checkpoint.py ├── Dockerfile ├── __init__.py ├── app │ ├── __init__.py │ ├── api │ │ ├── __init__.py │ │ └── api.py │ ├── common │ │ ├── __init__.py │ │ ├── double_mutant_generation.py │ │ ├── models.py │ │ ├── plot_models.py │ │ ├── score_new_sequences.py │ │ └── utils.py │ ├── experiments │ │ ├── high_polyreactivity_high_throughput.csv │ │ ├── low_polyreactivity_high_throughput.csv │ │ └── low_throughput_polyspecificity_scores_w_exp.csv │ └── models │ │ ├── 3mer_logistic_regression_CDRS_full_dist0.sav │ │ ├── cnn_20.tar │ │ ├── cnn_CDRS_full_10.tar │ │ ├── cnn_CDRS_full_dist0_10.tar │ │ ├── cnn_full_20.tar │ │ ├── logistic_regression_3mer_CDRS.sav │ │ ├── logistic_regression_3mer_CDRS_full.sav │ │ ├── logistic_regression_onehot_CDRS.sav │ │ ├── logistic_regression_onehot_CDRS_full.sav │ │ ├── onehot_logistic_regression_CDRS_full_dist0.sav │ │ ├── rnn_20.tar │ │ ├── rnn_CDRS_full_20.tar │ │ ├── rnn_CDRS_full_dist0_20.tar │ │ ├── rnn_full_20.tar │ │ ├── testing_cnn_20.py │ │ └── testing_rnn_20.py ├── examples │ ├── sample_sequences.fa │ ├── sample_sequences_H.csv │ ├── sample_sequences_scores.csv │ └── score_new_sequences.ipynb ├── main.py └── requirements.txt ├── docker-compose.yml └── frontend ├── .gitignore ├── Dockerfile ├── README.md ├── package.json ├── public ├── favicon.ico ├── index.html ├── logo192.png ├── logo512.png ├── manifest.json ├── pdf.worker.js ├── pdf.worker.js.map ├── plots └── robots.txt └── src ├── App.js ├── blurbs.jsx ├── components ├── Main │ └── index.jsx ├── NavigationBar │ └── index.jsx └── ResultsTable │ └── index.jsx ├── index.css ├── index.js ├── logo.svg ├── pages ├── FAQPage │ └── index.jsx ├── HomePage │ └── index.jsx ├── NotFoundPage │ └── index.jsx └── ResultsPage │ ├── 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