├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── R └── functions.R ├── README.md ├── _pkgdown.yml ├── docs ├── 404.html ├── LICENSE.html ├── articles │ ├── appendix1a_example_code.html │ ├── appendix1a_example_code_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ ├── figure-html │ │ │ └── unnamed-chunk-8-1.png │ │ └── header-attrs-2.7 │ │ │ └── header-attrs.js │ ├── appendix1b_example_code.html │ ├── appendix1b_example_code_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ ├── figure-html │ │ │ └── unnamed-chunk-7-1.png │ │ └── header-attrs-2.7 │ │ │ └── header-attrs.js │ ├── appendix1c_sensitivity.html │ ├── appendix1c_sensitivity_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ ├── figure-html │ │ │ ├── unnamed-chunk-12-1.png │ │ │ ├── unnamed-chunk-6-1.png │ │ │ └── unnamed-chunk-9-1.png │ │ └── header-attrs-2.7 │ │ │ └── header-attrs.js │ ├── appendix2_extended_example.html │ ├── appendix2_extended_example_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ ├── figure-html │ │ │ ├── unnamed-chunk-10-1.png │ │ │ ├── unnamed-chunk-11-1.png │ │ │ ├── unnamed-chunk-3-1.png │ │ │ ├── unnamed-chunk-4-1.png │ │ │ └── unnamed-chunk-9-1.png │ │ └── header-attrs-2.7 │ │ │ └── header-attrs.js │ ├── appendix3a_binomial.html │ ├── appendix3a_binomial_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ ├── figure-html │ │ │ └── unnamed-chunk-2-1.png │ │ └── header-attrs-2.7 │ │ │ └── header-attrs.js │ ├── appendix3b_extended_binomial.html │ ├── appendix3b_extended_binomial_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ ├── figure-html │ │ │ ├── prob-vs-logit-1.png │ │ │ └── unnamed-chunk-2-1.png │ │ └── header-attrs-2.7 │ │ │ └── header-attrs.js │ ├── index.html │ ├── paper.html │ └── paper_files │ │ ├── accessible-code-block-0.0.1 │ │ └── empty-anchor.js │ │ └── header-attrs-2.7 │ │ └── header-attrs.js ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── index.html ├── link.svg ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml └── reference │ ├── app.html │ ├── appendix.html │ ├── index.html │ └── paper.html ├── inst ├── CITATION ├── app │ ├── R │ │ ├── data_funcs.R │ │ ├── lmer_funcs.R │ │ ├── misc_funcs.R │ │ └── plot_funcs.R │ ├── app.R │ ├── comp_tab.R │ ├── intro_tab.R │ ├── main_tab.R │ ├── power_tab.R │ └── www │ │ └── custom.css ├── appendices │ ├── appendix1a_example_code.Rmd │ ├── appendix1b_example_code.Rmd │ ├── appendix1c_sensitivity.Rmd │ ├── appendix2_extended_example.Rmd │ ├── appendix3a_binomial.Rmd │ ├── appendix3b_extended_binomial.Rmd │ ├── appendix3b_treasurehunt.Rmd │ └── appendix3b_treasuremain.Rmd └── paper │ ├── 01.AMPSS_LMEM.Rmd │ ├── 01.AMPSS_LMEM.docx │ ├── 01.AMPSS_LMEM.html │ ├── 01.AMPSS_LMEM.pdf │ ├── 01.AMPSS_LMEM.tex │ ├── 01.AMPSS_LMEM_cache │ ├── html │ │ ├── __packages │ │ ├── sim_beafc272da0ce5a03f1702bf7552cad5.RData │ │ ├── sim_beafc272da0ce5a03f1702bf7552cad5.rdb │ │ └── sim_beafc272da0ce5a03f1702bf7552cad5.rdx │ └── latex │ │ └── __packages │ ├── Makefile │ ├── bibliography.bib │ ├── images │ ├── orcid.png │ ├── sim-items-1.pdf │ ├── sim-items-1.png │ ├── sim-subjects-1.pdf │ └── sim-subjects-1.png │ ├── r-references.bib │ └── sims.csv ├── lmem_sim.Rproj ├── man ├── app.Rd ├── appendix.Rd └── paper.Rd └── vignettes ├── .gitignore ├── appendix1a_example_code.Rmd ├── appendix1b_example_code.Rmd ├── appendix1c_sensitivity.Rmd ├── appendix2_extended_example.Rmd ├── appendix3a_binomial.Rmd ├── appendix3b_extended_binomial.Rmd ├── appendix3b_treasurehunt.Rmd ├── appendix3b_treasuremain.Rmd ├── bibliography.bib ├── paper.Rmd ├── r-references.bib ├── sims.csv └── sims ├── binomial.csv ├── binomial_ext_0.6_0.5_0.5_0.4.csv ├── ext_sims.csv ├── ext_sims_2.csv ├── sens1.csv ├── sens2.csv ├── sens3.csv ├── sims.csv └── sims_base.csv /.Rbuildignore: 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