├── LICENSE ├── README.md ├── free_energy_clustering ├── FE_landscape_clustering.py ├── GMM.py ├── GMM_free_energy.py ├── __init__.py ├── cluster_density.py ├── cross_validation.py ├── free_energy_pathways.py └── stack_landscapes.py ├── toy_models ├── Kmeans_cluster.py ├── __init__.py ├── agglomerative_ward_cluster.py ├── evaluate_toy_models.py ├── spectral_cluster.py ├── toy_model_GMM_2D.py ├── toy_model_blobs.py ├── toy_model_moons.py ├── toy_model_multiple_GMMs.py └── toy_model_nonlinear_GMM_2D.py └── tutorial_free_energy_clustering.ipynb /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/delemottelab/InfleCS-free-energy-clustering-tutorial/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 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