├── LICENSE ├── MANIFEST.in ├── README.md ├── bin ├── Initial_Conditions.py ├── SeqSero2_package.py ├── SeqSero2_update_kmer_database.py └── deinterleave_fastq.sh ├── seqsero2_db ├── H_and_O_and_specific_genes.fasta ├── antigens.pickle ├── invA_mers_dict └── special.pickle ├── setup.py └── version.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/denglab/SeqSero2/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/denglab/SeqSero2/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/denglab/SeqSero2/HEAD/README.md -------------------------------------------------------------------------------- /bin/Initial_Conditions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/denglab/SeqSero2/HEAD/bin/Initial_Conditions.py -------------------------------------------------------------------------------- /bin/SeqSero2_package.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/denglab/SeqSero2/HEAD/bin/SeqSero2_package.py -------------------------------------------------------------------------------- /bin/SeqSero2_update_kmer_database.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/denglab/SeqSero2/HEAD/bin/SeqSero2_update_kmer_database.py -------------------------------------------------------------------------------- /bin/deinterleave_fastq.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/denglab/SeqSero2/HEAD/bin/deinterleave_fastq.sh -------------------------------------------------------------------------------- /seqsero2_db/H_and_O_and_specific_genes.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/denglab/SeqSero2/HEAD/seqsero2_db/H_and_O_and_specific_genes.fasta -------------------------------------------------------------------------------- /seqsero2_db/antigens.pickle: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/denglab/SeqSero2/HEAD/seqsero2_db/antigens.pickle -------------------------------------------------------------------------------- /seqsero2_db/invA_mers_dict: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/denglab/SeqSero2/HEAD/seqsero2_db/invA_mers_dict -------------------------------------------------------------------------------- /seqsero2_db/special.pickle: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/denglab/SeqSero2/HEAD/seqsero2_db/special.pickle -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/denglab/SeqSero2/HEAD/setup.py -------------------------------------------------------------------------------- /version.py: -------------------------------------------------------------------------------- 1 | SeqSero2_version = '1.3.2' 2 | --------------------------------------------------------------------------------