├── .gitignore ├── README.md ├── config ├── ClientConfig.groovy ├── ServiceConfig.groovy ├── listeners │ ├── CsvListenerConfig.groovy │ ├── DatabaseListenerConfig.groovy │ ├── SimpleCsvListenerConfig.groovy │ └── SimpleXmiListenerConfig.groovy ├── log4j.properties └── readers │ ├── DatabaseCollectionReaderConfig.groovy │ ├── FileCollectionReaderConfig.groovy │ └── KnowtatorCollectionReaderConfig.groovy ├── pom.xml ├── resources ├── META-INF │ └── aop.xml ├── automaton.groovy ├── bp.pattern ├── bp_exclude.pattern ├── concepts.groovy ├── dates.groovy ├── excludeSectionHeader.groovy ├── excludeSectionHeader.pattern ├── height.pattern ├── indicator.groovy ├── indicator.pattern ├── numbers.groovy ├── numericValuesExclude.groovy ├── numericValuesExclude.pattern ├── range.pattern ├── relation.pattern ├── relation_time.pattern └── unitsOfMeasure.groovy └── src ├── main └── java │ └── gov │ └── va │ └── vinci │ ├── knowtator │ └── types │ │ ├── RelationshipAnnotation.java │ │ └── RelationshipAnnotation_Type.java │ ├── kttr │ └── types │ │ ├── BMIValue.java │ │ ├── BMIValue_Type.java │ │ ├── BPDiasValue.java │ │ ├── BPDiasValue_Type.java │ │ ├── BPSysValue.java │ │ ├── BPSysValue_Type.java │ │ ├── BPTerm.java │ │ ├── BPTerm_Type.java │ │ ├── BPValue.java │ │ ├── BPValue_Type.java │ │ ├── HRTerm.java │ │ ├── HRTerm_Type.java │ │ ├── HRValue.java │ │ ├── HRValue_Type.java │ │ ├── HeightValue.java │ │ ├── HeightValue_Type.java │ │ ├── Indicator.java │ │ ├── Indicator_Type.java │ │ ├── Other.java │ │ ├── Other_Type.java │ │ ├── OxygenValue.java │ │ ├── OxygenValue_Type.java │ │ ├── PainValue.java │ │ ├── PainValue_Type.java │ │ ├── RefValue.java │ │ ├── RefValue_Type.java │ │ ├── RespValue.java │ │ ├── RespValue_Type.java │ │ ├── TTerm.java │ │ ├── TTerm_Type.java │ │ ├── TValue.java │ │ ├── TValue_Type.java │ │ ├── TimeValue.java │ │ ├── TimeValue_Type.java │ │ ├── WeightValue.java │ │ └── WeightValue_Type.java │ ├── leo │ ├── regex │ │ └── types │ │ │ ├── RegularExpressionType.java │ │ │ └── RegularExpressionType_Type.java │ ├── types │ │ ├── CSI.java │ │ ├── CSI_Type.java │ │ ├── RelationshipAnnotation.java │ │ ├── RelationshipAnnotation_Type.java │ │ ├── ValidationAnnotation.java │ │ └── ValidationAnnotation_Type.java │ └── window │ │ └── types │ │ ├── Window.java │ │ └── Window_Type.java │ └── vitals │ ├── Service.java │ ├── Utils.java │ ├── VitalsClient.java │ ├── ae │ ├── AdjustPotentialBpAE.java │ ├── AdjustRangeAnnotator.java │ ├── AnalyzeNumbersAE.java │ ├── AnnotationFilter.java │ ├── AssignUnitAndTimeAE.java │ ├── BaseVitalExtractorAE.java │ ├── ExtractBloodPressureAE.java │ ├── ExtractBmi.java │ ├── ExtractHeartRateAE.java │ ├── ExtractHeightAE.java │ ├── ExtractPainAE.java │ ├── ExtractRespiratoryAE.java │ ├── ExtractSo2AE.java │ ├── ExtractTemperatureAE.java │ ├── ExtractWeightAE.java │ ├── FilterHeartRateAnnotator.java │ ├── FilterRelationsAE.java │ ├── FilterTimestampAE.java │ ├── HrVectorAnnotator.java │ └── MarkNotItAE.java │ ├── listeners │ ├── ChexListener.java │ ├── CsvListener.java │ ├── DbsListener.java │ ├── HrLearningListener.java │ ├── ListenerLogic.java │ ├── ProjectSimpleCsvListener.java │ ├── RegexListener.java │ ├── SimpleCompareListener.java │ ├── SimpleListener.java │ └── TypeCountListener.java │ ├── optimization │ ├── JetmRenderer.java │ └── PerformanceMonitor.java │ ├── pipeline │ └── VitalsPipeline.java │ └── types │ ├── Age_Term.java │ ├── Age_Term_Type.java │ ├── BMI_value.java │ ├── BMI_value_Type.java │ ├── Bmi_Term.java │ ├── Bmi_Term_Type.java │ ├── Bp_Diastolic_Term.java │ ├── Bp_Diastolic_Term_Type.java │ ├── Bp_Diastolic_value.java │ ├── Bp_Diastolic_value_Type.java │ ├── Bp_Systolic_Term.java │ ├── Bp_Systolic_Term_Type.java │ ├── Bp_Systolic_value.java │ ├── Bp_Systolic_value_Type.java │ ├── Bp_Term.java │ ├── Bp_Term_Type.java │ ├── Bp_value.java │ ├── Bp_value_Type.java │ ├── DoubleNumber.java │ ├── DoubleNumber_Type.java │ ├── ExcludeAllWindow.java │ ├── ExcludeAllWindow_Type.java │ ├── ExcludePotentialBp.java │ ├── ExcludePotentialBp_Type.java │ ├── ExcludePotentialHeight.java │ ├── ExcludePotentialHeight_Type.java │ ├── ExcludePrefix.java │ ├── ExcludePrefix_Type.java │ ├── FVWindow.java │ ├── FVWindow_Type.java │ ├── FV_Window.java │ ├── FV_Window_Type.java │ ├── Height_Term.java │ ├── Height_Term_Type.java │ ├── Height_value.java │ ├── Height_value_Type.java │ ├── HiPrecisionWindow.java │ ├── HiPrecisionWindow_Type.java │ ├── Hr_Prediction.java │ ├── Hr_Prediction_Type.java │ ├── Hr_Term.java │ ├── Hr_Term_Type.java │ ├── Hr_Vector.java │ ├── Hr_Vector_Type.java │ ├── Hr_value.java │ ├── Hr_value_Type.java │ ├── Indicator.java │ ├── Indicator_Type.java │ ├── IntegerNumber.java │ ├── IntegerNumber_Type.java │ ├── LowerPrecisionWindow.java │ ├── LowerPrecisionWindow_Type.java │ ├── Month.java │ ├── Month_Type.java │ ├── NotIt_Term.java │ ├── NotIt_Term_Type.java │ ├── Numeric.java │ ├── NumericExclude.java │ ├── NumericExclude_Type.java │ ├── Numeric_Type.java │ ├── Output_Value.java │ ├── Output_Value_Type.java │ ├── Pain_Term.java │ ├── Pain_Term_Type.java │ ├── Pain_value.java │ ├── Pain_value_Type.java │ ├── Pattern.java │ ├── Pattern_Type.java │ ├── PotentialBp.java │ ├── PotentialBp_Type.java │ ├── PotentialHeight.java │ ├── PotentialHeight_Type.java │ ├── Range.java │ ├── Range_Type.java │ ├── Relation.java │ ├── Relation_Time.java │ ├── Relation_Time_Type.java │ ├── Relation_Type.java │ ├── Resp_Term.java │ ├── Resp_Term_Type.java │ ├── Resp_value.java │ ├── Resp_value_Type.java │ ├── So2_Term.java │ ├── So2_Term_Type.java │ ├── So2_value.java │ ├── So2_value_Type.java │ ├── T_Term.java │ ├── T_Term_Type.java │ ├── T_value.java │ ├── T_value_Type.java │ ├── Term.java │ ├── TermExclude.java │ ├── TermExclude_Type.java │ ├── Term_Type.java │ ├── Timestamp.java │ ├── Timestamp_Type.java │ ├── Unit.java │ ├── Unit_Type.java │ ├── Weight_Term.java │ ├── Weight_Term_Type.java │ ├── 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