├── .gitattributes ├── LICENSE ├── MANIFEST.in ├── README.md ├── VERSION ├── bin ├── linux │ └── fasta35 └── osx │ └── fasta35 ├── old ├── classes_family ├── classes_family.importance ├── classes_gram ├── classes_gram.importance ├── classes_lifestyle ├── classes_lifestyle.importance ├── convert_data.py ├── genomes │ ├── 101570.3.fas │ ├── 103216.1.fas │ ├── 103807.1.fas │ ├── 105154.1.fas │ ├── 106284.1.fas │ ├── 10658.1.fas │ ├── 10661.1.fas │ ├── 10665.1.fas │ ├── 10677.1.fas │ ├── 10678.1.fas │ ├── 10679.1.fas │ ├── 10680.1.fas │ ├── 10682.2.fas │ ├── 10685.2.fas │ ├── 10690.1.fas │ ├── 10693.2.fas │ ├── 10702.1.fas │ ├── 10704.2.fas │ ├── 10708.1.fas │ ├── 10710.1.fas │ ├── 10717.1.fas │ ├── 10719.1.fas │ ├── 10724.1.fas │ ├── 10726.1.fas │ ├── 10730.1.fas │ ├── 10742.1.fas │ ├── 10747.1.fas │ ├── 10752.2.fas │ ├── 10753.2.fas │ ├── 10754.1.fas │ ├── 10756.2.fas │ ├── 10759.1.fas │ ├── 10760.1.fas │ ├── 10761.1.fas │ ├── 10778.1.fas │ ├── 10843.1.fas │ ├── 10844.1.fas │ ├── 10845.2.fas │ ├── 10847.1.fas │ ├── 10848.1.fas │ ├── 10849.1.fas │ ├── 10854.1.fas │ ├── 10855.1.fas │ ├── 10857.2.fas │ ├── 10862.3.fas │ ├── 10863.2.fas │ ├── 10864.2.fas │ ├── 10867.1.fas │ ├── 10868.1.fas │ ├── 10869.1.fas │ ├── 10870.1.fas │ ├── 10871.1.fas │ ├── 10872.1.fas │ ├── 10876.1.fas │ ├── 10879.1.fas │ ├── 110457.1.fas │ ├── 111111.1.fas │ ├── 111112.1.fas │ ├── 111113.1.fas │ ├── 111114.1.fas │ ├── 111115.1.fas │ ├── 111116.1.fas │ ├── 111119.1.fas │ ├── 111120.1.fas │ ├── 111121.1.fas │ ├── 111122.1.fas │ ├── 111125.1.fas │ ├── 111126.1.fas │ ├── 112023.1.fas │ ├── 114416.1.fas │ ├── 114777.1.fas │ ├── 115987.1.fas │ ├── 117575.1.fas │ ├── 120086.1.fas │ ├── 12017.1.fas │ ├── 12021.1.fas │ ├── 12023.1.fas │ ├── 12024.2.fas │ ├── 120574.1.fas │ ├── 12336.2.fas │ ├── 12345.1.fas │ ├── 12348.2.fas │ ├── 12353.1.fas │ ├── 12355.1.fas │ ├── 12360.1.fas │ ├── 12390.1.fas │ ├── 12402.1.fas │ ├── 12407.1.fas │ ├── 12417.1.fas │ ├── 127507.1.fas │ ├── 127508.1.fas │ ├── 127509.3.fas │ ├── 127511.3.fas │ ├── 128710.2.fas │ ├── 128975.2.fas │ ├── 129009.1.fas │ ├── 129861.2.fas │ ├── 129862.2.fas │ ├── 130478.1.fas │ ├── 134554.1.fas │ ├── 136084.1.fas │ ├── 139870.2.fas │ ├── 139871.2.fas │ ├── 139872.2.fas │ ├── 145579.1.fas │ ├── 146269.2.fas │ ├── 148603.1.fas │ ├── 148943.1.fas │ ├── 151528.1.fas │ ├── 151534.1.fas │ ├── 151535.1.fas │ ├── 151536.1.fas │ ├── 151537.1.fas │ ├── 151538.1.fas │ ├── 151539.1.fas │ ├── 151599.3.fas │ ├── 154784.1.fas │ ├── 155148.1.fas │ ├── 157239.1.fas │ ├── 157898.2.fas │ ├── 157899.2.fas │ ├── 157924.1.fas │ ├── 161736.1.fas │ ├── 164037.1.fas │ ├── 169683.1.fas │ ├── 172667.1.fas │ ├── 173443.1.fas │ ├── 173707.1.fas │ ├── 173824.1.fas │ ├── 175950.1.fas │ ├── 176106.2.fas │ ├── 179237.1.fas │ ├── 180503.1.fas │ ├── 180504.1.fas │ ├── 180816.1.fas │ ├── 181007.1.fas │ ├── 181604.1.fas │ ├── 185959.1.fas │ ├── 186152.1.fas │ ├── 186153.1.fas │ ├── 187764.2.fas │ ├── 188350.1.fas │ ├── 189836.1.fas │ ├── 190478.1.fas │ ├── 194699.1.fas │ ├── 194701.2.fas │ ├── 194802.1.fas │ ├── 194948.1.fas │ ├── 194949.1.fas │ ├── 194966.1.fas │ ├── 196242.1.fas │ ├── 197310.2.fas │ ├── 197783.1.fas │ ├── 198110.2.fas │ ├── 198538.1.fas │ ├── 198539.1.fas │ ├── 198540.1.fas │ ├── 198541.1.fas │ ├── 198542.1.fas │ ├── 198543.1.fas │ ├── 200913.2.fas │ ├── 201846.1.fas │ ├── 204086.1.fas │ ├── 204090.1.fas │ ├── 204270.1.fas │ ├── 205868.1.fas │ ├── 205869.1.fas │ ├── 205870.1.fas │ ├── 205872.1.fas │ ├── 205874.1.fas │ ├── 205875.1.fas │ ├── 205876.1.fas │ ├── 205877.1.fas │ ├── 205879.1.fas │ ├── 205880.1.fas │ ├── 207597.1.fas │ ├── 209052.1.fas │ ├── 213236.1.fas │ ├── 213769.2.fas │ ├── 213775.2.fas │ ├── 215158.1.fas │ ├── 215167.2.fas │ ├── 221029.1.fas │ ├── 222645.1.fas │ ├── 223524.1.fas │ ├── 225067.3.fas │ ├── 225588.1.fas │ ├── 225725.1.fas │ ├── 225726.1.fas │ ├── 225979.1.fas │ ├── 227470.1.fas │ ├── 227720.1.fas │ ├── 227940.1.fas │ ├── 230158.1.fas │ ├── 230871.1.fas │ ├── 232237.1.fas │ ├── 233894.4.fas │ ├── 235201.3.fas │ ├── 235266.2.fas │ ├── 236750.1.fas │ ├── 238854.3.fas │ ├── 242527.1.fas │ ├── 242861.1.fas │ ├── 244310.1.fas │ ├── 244589.2.fas │ ├── 244590.2.fas │ ├── 245685.2.fas │ ├── 247080.1.fas │ ├── 248496.2.fas │ ├── 254397.2.fas │ ├── 255131.1.fas │ ├── 255431.1.fas │ ├── 256994.2.fas │ ├── 259901.1.fas │ ├── 260120.2.fas │ ├── 260121.2.fas │ ├── 260372.3.fas │ ├── 260373.1.fas │ ├── 260827.3.fas │ ├── 261665.2.fas │ ├── 261726.2.fas │ ├── 262071.2.fas │ ├── 263374.1.fas │ ├── 263375.1.fas │ ├── 264729.3.fas │ ├── 268746.3.fas │ ├── 268747.3.fas │ ├── 268748.3.fas │ ├── 270161.2.fas │ ├── 270673.3.fas │ ├── 273133.2.fas │ ├── 279280.3.fas │ ├── 279281.3.fas │ ├── 279303.3.fas │ ├── 279383.3.fas │ ├── 279530.3.fas │ ├── 280701.3.fas │ ├── 280702.3.fas │ ├── 28358.2.fas │ ├── 28369.1.fas │ ├── 285013.2.fas │ ├── 287412.2.fas │ ├── 290650.2.fas │ ├── 292029.3.fas │ ├── 292443.3.fas │ ├── 29252.1.fas │ ├── 292639.2.fas │ ├── 293178.2.fas │ ├── 293644.3.fas │ ├── 294382.3.fas │ ├── 294631.3.fas │ ├── 298338.3.fas │ ├── 300186.2.fas │ ├── 306323.3.fas │ ├── 307240.3.fas │ ├── 309181.2.fas │ ├── 310539.3.fas │ ├── 310953.3.fas │ ├── 313629.2.fas │ ├── 31532.1.fas │ ├── 31535.1.fas │ ├── 31537.1.fas │ ├── 315953.2.fas │ ├── 31754.1.fas │ ├── 31757.1.fas │ ├── 318593.2.fas │ ├── 318594.2.fas │ ├── 318595.2.fas │ ├── 318596.2.fas │ ├── 320122.2.fas │ ├── 320831.3.fas │ ├── 320832.3.fas │ ├── 320834.3.fas │ ├── 320835.3.fas │ ├── 320836.3.fas │ ├── 320837.3.fas │ ├── 320839.3.fas │ ├── 320840.3.fas │ ├── 320841.3.fas │ ├── 320842.3.fas │ ├── 320843.3.fas │ ├── 320844.3.fas │ ├── 320845.3.fas │ ├── 320846.3.fas │ ├── 320847.3.fas │ ├── 320848.3.fas │ ├── 320849.3.fas │ ├── 320850.3.fas │ ├── 322855.3.fas │ ├── 326036.2.fas │ ├── 326037.2.fas │ ├── 326574.3.fas │ ├── 329254.2.fas │ ├── 329852.2.fas │ ├── 329853.2.fas │ ├── 329855.2.fas │ ├── 329864.2.fas │ ├── 329886.3.fas │ ├── 330395.2.fas │ ├── 330396.2.fas │ ├── 330397.2.fas │ ├── 330398.2.fas │ ├── 330399.2.fas │ ├── 331627.2.fas │ ├── 332032.3.fas │ ├── 334856.3.fas │ ├── 335797.2.fas │ ├── 33771.1.fas │ ├── 337828.3.fas │ ├── 338101.2.fas │ ├── 338102.2.fas │ ├── 338103.2.fas │ ├── 338105.2.fas │ ├── 338106.2.fas │ ├── 338107.2.fas │ ├── 338108.2.fas │ ├── 338109.2.fas │ ├── 338110.2.fas │ ├── 338111.2.fas │ ├── 338112.2.fas │ ├── 338113.2.fas │ ├── 338114.2.fas │ ├── 338115.2.fas │ ├── 338116.2.fas │ ├── 338117.2.fas │ ├── 338118.2.fas │ ├── 338119.2.fas │ ├── 338120.2.fas │ ├── 338121.2.fas │ ├── 338122.2.fas │ ├── 338123.2.fas │ ├── 338124.2.fas │ ├── 338125.2.fas │ ├── 338126.2.fas │ ├── 338127.2.fas │ ├── 338128.2.fas │ ├── 338129.2.fas │ ├── 338130.2.fas │ ├── 338131.2.fas │ ├── 338132.2.fas │ ├── 338133.2.fas │ ├── 338134.2.fas │ ├── 338135.2.fas │ ├── 338136.2.fas │ ├── 338137.2.fas │ ├── 338138.2.fas │ ├── 338140.2.fas │ ├── 338473.2.fas │ ├── 340054.2.fas │ ├── 340435.2.fas │ ├── 341698.2.fas │ ├── 342564.2.fas │ ├── 343516.2.fas │ ├── 344021.2.fas │ ├── 344022.2.fas │ ├── 345922.2.fas │ ├── 346881.2.fas │ ├── 346882.2.fas │ ├── 346883.2.fas │ ├── 346884.2.fas │ ├── 347324.2.fas │ ├── 347325.2.fas │ ├── 347326.2.fas │ ├── 347327.2.fas │ ├── 347328.2.fas │ ├── 347329.2.fas │ ├── 347962.2.fas │ ├── 347962.3.fas │ ├── 347966.2.fas │ ├── 348058.2.fas │ ├── 348137.2.fas │ ├── 35238.1.fas │ ├── 35241.1.fas │ ├── 35343.1.fas │ ├── 35345.1.fas │ ├── 355246.2.fas │ ├── 359961.2.fas │ ├── 359962.2.fas │ ├── 360398.2.fas │ ├── 36343.2.fas │ ├── 363555.2.fas │ ├── 365048.2.fas │ ├── 369257.2.fas │ ├── 370623.2.fas │ ├── 372457.2.fas │ ├── 373126.2.fas │ ├── 373126.3.fas │ ├── 373403.2.fas │ ├── 373404.2.fas │ ├── 373405.2.fas │ ├── 373406.2.fas │ ├── 373407.2.fas │ ├── 373408.2.fas │ ├── 373409.2.fas │ ├── 373410.2.fas │ ├── 373411.2.fas │ ├── 373412.2.fas │ ├── 373413.2.fas │ ├── 373414.2.fas │ ├── 373415.2.fas │ ├── 374525.2.fas │ ├── 374526.2.fas │ ├── 374527.2.fas │ ├── 374529.2.fas │ ├── 37554.1.fas │ ├── 376758.2.fas │ ├── 376821.2.fas │ ├── 379329.2.fas │ ├── 379501.2.fas │ ├── 382359.2.fas │ ├── 382685.2.fas │ ├── 384359.2.fas │ ├── 384360.2.fas │ ├── 384848.2.fas │ ├── 386792.2.fas │ ├── 386793.2.fas │ ├── 387905.2.fas │ ├── 387908.2.fas │ ├── 387909.2.fas │ ├── 387910.2.fas │ ├── 388452.2.fas │ ├── 389469.2.fas │ ├── 390978.2.fas │ ├── 393598.2.fas │ ├── 396034.2.fas │ ├── 396359.2.fas │ ├── 397353.2.fas │ ├── 39803.2.fas │ ├── 39804.2.fas │ ├── 398839.2.fas │ ├── 399183.2.fas │ ├── 399185.2.fas │ ├── 400567.2.fas │ ├── 403905.2.fas │ ├── 40521.1.fas │ ├── 40522.2.fas │ ├── 40523.2.fas │ ├── 405947.2.fas │ ├── 40631.1.fas │ ├── 406340.2.fas │ ├── 407392.2.fas │ ├── 413066.2.fas │ ├── 414970.2.fas │ ├── 416419.2.fas │ ├── 417280.2.fas │ ├── 418443.2.fas │ ├── 423476.2.fas │ ├── 424716.2.fas │ ├── 424944.2.fas │ ├── 430796.2.fas │ ├── 431891.2.fas │ ├── 431892.2.fas │ ├── 431893.2.fas │ ├── 431894.2.fas │ ├── 43685.1.fas │ ├── 437329.2.fas │ ├── 437444.2.fas │ ├── 438482.2.fas │ ├── 439809.2.fas │ ├── 440250.2.fas │ ├── 442493.2.fas │ ├── 444474.2.fas │ ├── 445515.2.fas │ ├── 445516.2.fas │ ├── 445517.2.fas │ ├── 446529.2.fas │ ├── 446807.2.fas │ ├── 447909.2.fas │ ├── 448384.2.fas │ ├── 451705.2.fas │ ├── 45406.2.fas │ ├── 455649.2.fas │ ├── 458639.2.fas │ ├── 459291.2.fas │ ├── 459845.2.fas │ ├── 46014.1.fas │ ├── 462590.2.fas │ ├── 466051.2.fas │ ├── 466052.2.fas │ ├── 467481.2.fas │ ├── 469660.2.fas │ ├── 470314.2.fas │ ├── 47049.2.fas │ ├── 470865.2.fas │ ├── 475178.2.fas │ ├── 476523.2.fas │ ├── 480808.2.fas │ ├── 482058.2.fas │ ├── 482822.2.fas │ ├── 484895.2.fas │ ├── 484896.2.fas │ ├── 487152.2.fas │ ├── 489779.2.fas │ ├── 489828.2.fas │ ├── 489829.2.fas │ ├── 490103.2.fas │ ├── 490912.2.fas │ ├── 490913.2.fas │ ├── 491003.2.fas │ ├── 493906.2.fas │ ├── 494269.2.fas │ ├── 496396.2.fas │ ├── 496874.2.fas │ ├── 499235.2.fas │ ├── 49964.1.fas │ ├── 503388.2.fas │ ├── 504346.2.fas │ ├── 505291.2.fas │ ├── 505292.2.fas │ ├── 50948.1.fas │ ├── 511969.2.fas │ ├── 512792.2.fas │ ├── 513550.2.fas │ ├── 51369.1.fas │ ├── 515982.2.fas │ ├── 520962.2.fas │ ├── 526118.2.fas │ ├── 528321.2.fas │ ├── 52979.1.fas │ ├── 529929.2.fas │ ├── 532074.2.fas │ ├── 532075.2.fas │ ├── 532076.2.fas │ ├── 532077.2.fas │ ├── 532078.2.fas │ ├── 53369.2.fas │ ├── 537874.2.fas │ ├── 538398.2.fas │ ├── 538979.2.fas │ ├── 540064.2.fas │ ├── 540065.2.fas │ ├── 540066.2.fas │ ├── 540067.2.fas │ ├── 540068.2.fas │ ├── 541865.2.fas │ ├── 543152.2.fas │ ├── 543153.2.fas │ ├── 543939.2.fas │ ├── 546182.2.fas │ ├── 546183.2.fas │ ├── 546184.2.fas │ ├── 546185.2.fas │ ├── 546803.2.fas │ ├── 546805.2.fas │ ├── 546806.2.fas │ ├── 546807.2.fas │ ├── 546808.2.fas │ ├── 549445.2.fas │ ├── 549446.2.fas │ ├── 551790.2.fas │ ├── 551895.2.fas │ ├── 552525.2.fas │ ├── 55510.3.fas │ ├── 55511.2.fas │ ├── 555387.2.fas │ ├── 555603.2.fas │ ├── 557289.2.fas │ ├── 557393.2.fas │ ├── 55884.1.fas │ ├── 559189.2.fas │ ├── 560178.2.fas │ ├── 561996.2.fas │ ├── 561997.2.fas │ ├── 561998.2.fas │ ├── 561999.2.fas │ ├── 563119.2.fas │ ├── 563121.2.fas │ ├── 563122.2.fas │ ├── 563123.2.fas │ ├── 563124.2.fas │ ├── 563769.2.fas │ ├── 564886.2.fas │ ├── 565140.2.fas │ ├── 573591.2.fas │ ├── 575608.2.fas │ ├── 575610.2.fas │ ├── 576789.2.fas │ ├── 576790.2.fas │ ├── 576791.2.fas │ ├── 578234.2.fas │ ├── 581037.2.fas │ ├── 582382.2.fas │ ├── 590739.2.fas │ ├── 591487.2.fas │ ├── 593131.2.fas │ ├── 593131.3.fas │ ├── 59506.3.fas │ ├── 624134.2.fas │ ├── 627087.2.fas │ ├── 627480.2.fas │ ├── 63118.1.fas │ ├── 632112.2.fas │ ├── 633135.2.fas │ ├── 637730.2.fas │ ├── 641487.2.fas │ ├── 641832.2.fas │ ├── 64186.1.fas │ ├── 642111.2.fas │ ├── 644007.2.fas │ ├── 644524.2.fas │ ├── 644563.2.fas │ ├── 646413.2.fas │ ├── 648017.2.fas │ ├── 649688.2.fas │ ├── 655097.2.fas │ ├── 655098.2.fas │ ├── 658056.2.fas │ ├── 658401.2.fas │ ├── 663241.2.fas │ ├── 663554.2.fas │ ├── 663557.2.fas │ ├── 665032.2.fas │ ├── 665033.2.fas │ ├── 665883.2.fas │ ├── 665886.2.fas │ ├── 665887.2.fas │ ├── 66797.1.fas │ ├── 668618.2.fas │ ├── 673375.2.fas │ ├── 673832.2.fas │ ├── 673835.2.fas │ ├── 673837.2.fas │ ├── 673839.2.fas │ ├── 674081.2.fas │ ├── 674082.2.fas │ ├── 67571.1.fas │ ├── 67571.2.fas │ ├── 682370.2.fas │ ├── 683735.2.fas │ ├── 686439.2.fas │ ├── 693582.2.fas │ ├── 693627.2.fas │ ├── 693628.2.fas │ ├── 693629.2.fas │ ├── 70203.1.fas │ ├── 70734.2.fas │ ├── 71366.1.fas │ ├── 72638.1.fas │ ├── 74336.1.fas │ ├── 75320.1.fas │ ├── 75590.1.fas │ ├── 75725.1.fas │ ├── 77048.1.fas │ ├── 77775.1.fas │ ├── 78541.1.fas │ ├── 83129.2.fas │ ├── 83201.1.fas │ ├── 85154.1.fas │ ├── 88870.1.fas │ ├── 90410.1.fas │ ├── 90963.1.fas │ ├── 93224.1.fas │ ├── 97081.1.fas │ └── 99179.2.fas ├── make_database.pl ├── make_importance.pl ├── phacts.conf ├── phacts.pl └── sims.txt.7z ├── phacts.py ├── phacts ├── __init__.py ├── lifestyle.pkl.xz ├── linux.fasta35 ├── load_data.py └── osx.fasta35 ├── setup.py └── tests ├── NC_000866.faa └── NC_001416.faa /.gitattributes: -------------------------------------------------------------------------------- 1 | * linguist-vendored 2 | *.py linguist-vendored=false 3 | -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | include *.md LICENSE VERSION 2 | include phacts/lifestyle.pkl.xz 3 | include phacts/*.fasta35 4 | include bin/osx/fasta35 5 | include bin/linux/fasta35 6 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # PHACTS 2 | 3 | A simple program to classify the lifestyle of phages. 4 | 5 | Introduction 6 | ------------ 7 | Phage Classification Tool Set (PHACTS) utilizes a novel similarity algorithm and 8 | a supervised Random Forest classifier to make a prediction whether the lifestyle 9 | of a phage, described by its proteome, is virulent or temperate. The similarity 10 | algorithm creates a training set from phages with known lifestyles and along with 11 | the lifestyle annotation, trains a Random Forest to classify the lifestyle of a 12 | phage. PHACTS predictions are shown to have a 99% precision rate. 13 | 14 | To install `PHACTS`, 15 | ``` 16 | pip install phacts 17 | ``` 18 | 19 | or 20 | 21 | ```sh 22 | git clone https://github.com/deprekate/PHACTS.git 23 | pip install PHACTS/ --user 24 | ``` 25 | 26 | This is the new python based recoding of my original perl code, and is in an alpha state for now. 27 | * I have included fasta35 binaries for Linux and OSX, that should install automatically. For 28 | Windows, you will need to download a windows fasta35 binary, and make it visible on the PATH 29 | 30 | I have tried to replicate exactly the functionality of the original published version. 31 | 32 | PHACTS Example 33 | -------------- 34 | 35 | Run on included sample data, the output is the predicted lifestyle and the class probabilities: 36 | ```sh 37 | $ phacts.py tests/NC_001416.faa 38 | Class probability standard deviation 39 | Temperate 0.626273726 0.101584648 40 | ``` 41 | -------------------------------------------------------------------------------- /VERSION: -------------------------------------------------------------------------------- 1 | 1.8 2 | -------------------------------------------------------------------------------- /bin/linux/fasta35: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/deprekate/PHACTS/5ce29fcef89180af905b9f968d402c30f47befaf/bin/linux/fasta35 -------------------------------------------------------------------------------- /bin/osx/fasta35: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/deprekate/PHACTS/5ce29fcef89180af905b9f968d402c30f47befaf/bin/osx/fasta35 -------------------------------------------------------------------------------- /old/convert_data.py: -------------------------------------------------------------------------------- 1 | import os 2 | import sys 3 | import random 4 | import pickle 5 | import dill 6 | import lzma 7 | 8 | 9 | class Protein(dict): 10 | def __init__(self, header=None, sequence=''): 11 | self.header = header 12 | self.sequence = sequence 13 | self.importance = 0 14 | 15 | class Genome(dict): 16 | def __init__(self, name=None, label=None): 17 | self.name = name 18 | self.label = label 19 | self.proteins = dict() 20 | self.similarities = dict() 21 | 22 | 23 | # load genomes 24 | genomes = dict() 25 | fp = open("classes_lifestyle") 26 | for line in fp: 27 | name,label = line.rstrip().split('\t') 28 | genome = Genome(name, label) 29 | protein = Protein() 30 | fp = open("gen/" + name) 31 | for line in fp: 32 | if line.startswith(">"): 33 | genome.proteins[protein.header] = protein 34 | protein = Protein(header=line[1:].split()[0]) 35 | else: 36 | protein.sequence += line.rstrip() 37 | genome.proteins[protein.header] = protein 38 | genomes[name] = genome 39 | fp.close() 40 | 41 | #load importances 42 | fp = open("classes_lifestyle.importance") 43 | for line in fp: 44 | p,value = line.rstrip().split('\t') 45 | pg = p.split('.peg')[0][4:] + '.fas' 46 | genomes[pg].proteins[p].importance = value 47 | fp.close() 48 | 49 | fp = open("sims.txt") 50 | for line in fp: 51 | key,value = line.rstrip().split('\t') 52 | p,g = key.split('<->') 53 | pg = p.split('.peg')[0][4:] + '.fas' 54 | if pg in genomes and g in genomes: 55 | genomes[g].similarities[p] = value 56 | fp.close() 57 | 58 | print(genomes["101570.3.fas"].similarities["fig|101570.3.peg.1"]) 59 | 60 | with lzma.open("lifestyle.pkl.xz", "wb") as f: 61 | #pickle.dump(genomes, f, pickle.DEFAULT_PROTOCOL) 62 | dill.dump(genomes, f, pickle.DEFAULT_PROTOCOL) 63 | ''' 64 | data = None 65 | with lzma.open("lifestyle.pkl.xz", "rb") as f: 66 | data = pickle.load(f) 67 | 68 | print("BEGIN") 69 | selected = list() 70 | keys = list(data.keys()) 71 | while( len(selected) < 10): 72 | key = random.choice(keys) 73 | if float(data[key].importance) > 0.001: 74 | selected.append(key) 75 | print(selected) 76 | ''' 77 | -------------------------------------------------------------------------------- /old/genomes/105154.1.fas: -------------------------------------------------------------------------------- 1 | >fig|105154.1.peg.1 [Chlamydia phage 2] [Phage capsid protein #Fam0039] 2 | MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDE 3 | VLPGDTFSLKEAFLARMATPIFPLMDNLRLDTQYFFVPLRLLWSNFQKFC 4 | GEQDNPDDSTDFLTPILTAPAGGFTEGSIHDYLGLPTKVAGVQCVAFWHR 5 | AYNLIWNQYYRDENIQESVEVQMGDTTTDEVNNYTLLKRGKRYDYFTSCL 6 | PWPQKGPAVTIGVGGKAPIEGLYMNVNSSNPVGKFVLDSQSTPRVLQDLQ 7 | GNKLSGIAAYNQTGKHVYVNSAWYTVTPQSEPAATLENGNYYTTQKPQIY 8 | ADLGATSPVTINSLREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDAR 9 | LQRAEYLGGSSTPVNISPIPQTSSTDSTSPQGNLAAYGTAIGSKRVFTKS 10 | FTEHGVILGLASVRADLNYQQGLDRMWSRRTRWDFYWPALSHLGEQAVLN 11 | KEIYCQGPSVKNSGGEIVDDQVFGYQERFAEYRYKTSKITGKFRSNATSS 12 | LDSWHLAQEFENLPTLSPEFIEENPPMDRVLAVSTEPDFLLDGWFSLRCA 13 | RPMPVYSVPGFIDHF 14 | 15 | >fig|105154.1.peg.2 [Chlamydia phage 2] [Phage protein] 16 | MTKSLDIRRDLRSIAIRLRKLPASSDQMLQVL 17 | 18 | >fig|105154.1.peg.3 [Chlamydia phage 2] [Phage protein] 19 | MWRVYESRTTYEYSRFSSFWSCPRIILSPWNSFWSFRISWRTETKCDCEA 20 | NC 21 | 22 | >fig|105154.1.peg.4 [Chlamydia phage 2] [Phage capsid and scaffold] 23 | MNPEQLTNTLGSAVSGVAQGLSFLPGIASGVLGYLGAQKQNATAKQIARE 24 | QMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSKGGASSPAGASWSPNNPV 25 | ESAMNSGLAVQRLTYERKKMQAELQNLREQNRLIRNQAIREGYLAERDKY 26 | MRIAGVPVATEMLDRTSGLLSSSAKAFKNLFSRKGR 27 | 28 | >fig|105154.1.peg.5 [Chlamydia phage 2] [Phage capsid and scaffold] 29 | MFKSAYSEKKSVKMKFTQKSLTQQHNKDECDINNIVAKLNATGVLEHVER 30 | RSPRYMDCMDPIEYSEALNVVIEAQEQFDSLPAKVRERFGNDPEAMLDFL 31 | SREENYEEAKALGFVYEDGTSGAPQTFFEAGPKDDQNVANQEPGLAQK 32 | 33 | >fig|105154.1.peg.6 [Chlamydia phage 2] [Phage protein] 34 | MRLKMARRRYRLPRRRSRRLFSRTALRMHPRNRLRRIMRGGIRF 35 | 36 | >fig|105154.1.peg.7 [Chlamydia phage 2] [Phage protein] 37 | MLIFNVLAFIFGLLYLLNEALMICAYPFVCFIDSDNQLFFPKGVKSSKPW 38 | DKVRELNALEQAQPEEYRVRWVLMPCRRCKFCRVQNAKIWSYRCMHEASL 39 | YSQNCFLTLTYEDRHLPENGSLVRDHPRLFLMRLREHIYPHKIRYFGCGE 40 | YGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFVSEKLMRLWPFGFSTV 41 | GSVTRQSAGYVARYSLKKVNGDISQDHYGQRLPEFLMCSLKPGIGADWYE 42 | KYKCDVYPQDYLVVQDKGKSFKTRPPRYYDKLHSRFDPEEMDEVKQKRIE 43 | KVMALPELTQDKAEVKQYIFNDRTKRLFRDYEEESY 44 | 45 | >fig|105154.1.peg.8 [Chlamydia phage 2] [Phage protein] 46 | MKVFTVFDIKTEIYQQPFFMQATGAAIRAFSDMVNEDPTKNQFAAHPEDY 47 | ILYEIGSYDDSTGTFIPLDVPKALGTGLDFKHKQ 48 | 49 | -------------------------------------------------------------------------------- /old/genomes/10843.1.fas: -------------------------------------------------------------------------------- 1 | >fig|10843.1.peg.1 [Enterobacteria phage G4] [RF replication, viral strand synthesis protein] 2 | MFKVHSDYFSKPNIDAIKPLVETAGMSVLTQSPNLRIWKQCNTRIKLLEE 3 | ILAHYTNGIRRDDNGDFWMNPNSQLATTIAYRAHHKGHNPKFKQYPETFT 4 | LDDIITGKPIPQTAPDELQLSDEIVEDYRLTVLSIIEELQECYDVLGQLD 5 | INNTIDHKPLGNDHWNLLYEKPVYKHWYQLVSNRPLKDIRADYNYAKAKG 6 | VKDECSKILEESTMKSRRGFTVQRLMNAMRTAHSKGWYVVFDTLTLADDR 7 | LKDFYDNPNALRDYFRDIGRMVLTAEGRSVHDSSSDCYQYFCVPEYGTQH 8 | GRLHFHAVHLMRTLPLGSLDPNFGKLVRINRQINSLQNTWPYGYSMPIAV 9 | RYSQDAFSRAGWLWPVDSKGEPLKATSYMAVGFYVAKYVNKKSDIDMAVK 10 | GLGNKEWNNSLKTKINLIPKKVFRIRMSRNFGMKLLSMAHLSAETLMELT 11 | QVGYDVTPFNNILKQNAKKELKSRLAKKSVADVLEAQPVTTNLLKFMRNL 12 | TRTIGASNLQSFIASMTTKLTSTDISDETKNYVASAGIAVANLRIKSKWT 13 | AGGK 14 | 15 | >fig|10843.1.peg.2 [Enterobacteria phage G4] [shut off host DNA synthesis protein] 16 | MKSRRGFTVQRLMNAMRTAHSKGWYVVFDTLTLADDRLKDFYDNPNALRD 17 | YFRDIGRMVLTAEGRSVHDSSSDCYQYFCVPEYGTQHGRLHFHAVHLMRT 18 | LPLGSLDPNFGKLVRINRQINSLQNTWPYGYSMPIAVRYSQDAFSRAGWL 19 | WPVDSKGEPLKATSYMAVGFYVAKYVNKKSDIDMAVKGLGNKEWNNSLKT 20 | KINLIPKKVFRIRMSRNFGMKLLSMAHLSAETLMELTQVGYDVTPFNNIL 21 | KQNAKKELKSRLAKKSVADVLEAQPVTTNLLKFMRNLTRTIGASNLQSFI 22 | ASMTTKLTSTDISDETKNYVASAGIAVANLRIKSKWTAGGK 23 | 24 | >fig|10843.1.peg.3 [Enterobacteria phage G4] [Phage capsid assembly] 25 | MEQFTQNQNQPHTQESVQNTNVSQFRNETVINGSPVSGNPDGTDPSGLRR 26 | DPVQQHLEAERQERAQIEAGKEICRRRFGGATCDDESAKIHAQFDPNNRS 27 | VQPTEFYRFNDHEINKYGYF 28 | 29 | >fig|10843.1.peg.4 [Enterobacteria phage G4] [Phage protein] 30 | MKPKTTLLLQELLLLTYELNRSGLLVENEEIQSQLKKLEVVLLCNLSPSS 31 | QRAGKN 32 | 33 | >fig|10843.1.peg.5 [Enterobacteria phage G4] [DNA maturase, phage-associated] 34 | MRKFNLNLKNSRSSYFATFRHHLNVLAKTDALDEEKYLNMLGALLKDWFR 35 | YEEHFVHGKQSMLDILKERGLLSTSSTDTNHKGN 36 | 37 | >fig|10843.1.peg.6 [Enterobacteria phage G4] [Phage capsid assembly] 38 | MSKSNESAVAFQTAIASIKLIQASSVLDLTEDDFDFLTRDRVWIATDRSR 39 | ARRAIEACVYGTLDFVGYPRFPAPVEFISAVIAYYVHPVNIQTACLIMEG 40 | AEFTENIVNGVERPVKASELFAFTLLVRAGNKDLIGHAETNIREQLRAQG 41 | VM 42 | 43 | >fig|10843.1.peg.7 [Enterobacteria phage G4] [Phage endolysin] 44 | MEHWTLSGILAFLLLLSLFLPSLLITFIPLTSKPPVSSWKVLSLPKTSSM 45 | VLNAPLKPLNCSPSLFLFAPETKILSVTLKQTSVNSYALKVSCKDL 46 | 47 | >fig|10843.1.peg.8 [Enterobacteria phage G4] [Phage protein] 48 | MKKSIRRSGGKSKGARLWYVGGTQY 49 | 50 | >fig|10843.1.peg.9 [Enterobacteria phage G4] [Phage major capsid protein #Fam0055] 51 | MSNVQTSADRVPHDLSHLVFEAGKIGRLKTISWTPGGAGDSFECDMVGAI 52 | RLSPLRRGLAVDSRVDIFPFYIPHRHIYGQQWINFMKDGVNASPLPPVTC 53 | SSGWDSAAYLGTIPSSTLKVPKFLHQGYLNIYNNYFKPPWSDDLTYANPS 54 | NMPSEDYKWGVRVANLKSIWTAPLPPDTRTSENMTTGTSTIDIMGLQAAY 55 | AKLHTEQERDYFMTRYRDIMKEFGGHTSYDGDNRPLLLMRSEFWASGYDV 56 | DGTDQSSLGQFSGRVQQTFNHKVPRFYVPEHRVIMTLAVTRFPPTHEMEM 57 | HYLVGKENLTYTDIACDPALMANLPPREVSLKEFFHSSPDSAKFKIAEGQ 58 | WYRTQPDRVAFPYNALDGFPFYSALPSTELKDRVLVNTNNYDEIFQSMQL 59 | AHWNMQTKFNINVYRHMPTTRDSIMTS 60 | 61 | >fig|10843.1.peg.10 [Enterobacteria phage G4] [Phage capsid and scaffold] 62 | MFQKFISKHNAPINSTQLAATKTPAVAAPVLSVPNLSRSTILINATTTAV 63 | TTHSGLCHVVRIDETNPTNHHALSIAGSLSNVPADMIAFAIRFEVADGVV 64 | PTAVPALYDVYPIETFNNGKAISFKDAVTIDSHPRTVGNDVYAGIMLWSN 65 | AWTASTISGVLSVNQVNREATVLQPLK 66 | 67 | >fig|10843.1.peg.11 [Enterobacteria phage G4] [Phage capsid and scaffold] 68 | MFGSIAGGIASALAGGLMGKLFGGGQSADSTGIQGNVLASDNNVVGANDA 69 | GIKSAIQGSTVPNSQEAAPSAISGILADSGKHALSSLTNAGANKLMEAVG 70 | LSKSASDKGKDTKDYLAAAFPELNPWERAGAGASSPGMQDAGFQNQKELT 71 | KMQLDNQKEIAKMQNETQKEIAGLQSITSRENTKDTVYAQNEMLAYNQKE 72 | SMSRVGAILENTSLTKQQQTSEIMRQMLTQAQTAGQYFTNDQIKELTRKV 73 | GADIDAVRANTARTHVETDRSKQEVQNSRYASSQVGKTAKDVSNAITDTA 74 | GSIVDYFRGADQKVADVYNNYFKDGKSKGIESNHRSK 75 | 76 | -------------------------------------------------------------------------------- /old/genomes/10845.2.fas: -------------------------------------------------------------------------------- 1 | >fig|10845.2.peg.1 [Microvirus Enterobacteria phage St-1] [A protein] 2 | MATEIFSDVVKAVWSHVTAKHAHLRMAVQVDNRSRLLSDLVYQLEKRLSE 3 | ETHLDGETLAVYESQTALLEDHMALVRKCAAQLDNSNTIDHRTPLDAECV 4 | FLFEMICPGVRYGKTLNSLWTKYVAQWPEKLIRHELDMVKPLSFKDEVAK 5 | YMEKMQEKTRKNRMTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNEN 6 | PNALRDYFRTVGRAVLRAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHV 7 | VHMVRTLPLGSHDPNFGRKVRNYRQINSFRGMWPYGFTQPIAVRYQHDAY 8 | SRKGWLWPVDKSGKAMQSKPYQAVAWYVTKYVAKQSDQRQKAITERQKKC 9 | KNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPLY 10 | QIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKIIRRLMKKTPEFNWQ 11 | SSIASMTVTLKNGDISDEARQYIIDAGITPTDLRAKATQAFGGK 12 | 13 | >fig|10845.2.peg.2 [Microvirus Enterobacteria phage St-1] [A protein] 14 | MRIAHQKGWFFVFDTLTLADDRLQAFNENPNALRDYFRTVGRAVLRAEGR 15 | SVKDSYNDCYRYLCVPEFGGQHGRLHWHVVHMVRTLPLGSHDPNFGRKVR 16 | NYRQINSFRGMWPYGFTQPIAVRYQHDAYSRKGWLWPVDKSGKAMQSKPY 17 | QAVAWYVTKYVAKQSDQRQKAITERQKKCKNPLMAICLKKEFRVRSSRKL 18 | GMELPSMAHLSNKVLLELSRISFDSSPLYQIVKENAKKQLTLNIGALPLH 19 | VILDVRPEVRSMLKIIRRLMKKTPEFNWQSSIASMTVTLKNGDISDEARQ 20 | YIIDAGITPTDLRAKATQAFGGK 21 | 22 | >fig|10845.2.peg.3 [Microvirus Enterobacteria phage St-1] [Phage capsid assembly] 23 | MQESINGNLSEERISGAQQSEARNGAPVNGSPEQQSASGTEPNQLRFQPS 24 | VSDSERERQKAIDLEHRRAAFARHFGCAPGSEKHVENYSSFDEKDTRVQL 25 | AEFYRFNDGHLKKWGYF 26 | 27 | >fig|10845.2.peg.4 [Microvirus Enterobacteria phage St-1] [Phage protein] 28 | MGIFLMKHVNTLLMQELRLLICELKRLRLSAVSDPDFSQEKIHAELDSLL 29 | RKLSRHFD 30 | 31 | >fig|10845.2.peg.5 [Microvirus Enterobacteria phage St-1] [DNA maturase, phage-associated] 32 | MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQWFQIED 33 | WKGNHKKLLDDLKKRDYL 34 | 35 | >fig|10845.2.peg.6 [Microvirus Enterobacteria phage St-1] [Phage capsid assembly] 36 | MNIVSDVNYATSVAALRMLQASAVLDITEEDFDFLTGDKIWIATDRNRAR 37 | RCVEACVYGALDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLVMEGAE 38 | FSENIINGVERPVNAAELFAYTLRIKAGFKETVIDAEENARQKLRANGLK 39 | 40 | >fig|10845.2.peg.7 [Microvirus Enterobacteria phage St-1] [Phage endolysin] 41 | MERWTLSAILAFLLLLSLLLPSLLIMFIPSTFRQHASLWKARSLAKTLLM 42 | ASSVRLTPLSSSRTPCVLRQDSKKL 43 | 44 | >fig|10845.2.peg.8 [Microvirus Enterobacteria phage St-1] [Phage protein] 45 | MKKARRSPSRRKGARLWYVGGSQF 46 | 47 | >fig|10845.2.peg.9 [Microvirus Enterobacteria phage St-1] [Phage major capsid protein #Fam0055] 48 | MSNVQTSAEREIVDLSHLAFDCGMIGRLKTVSWTPVIAGDSFELDAVGAL 49 | RLSPLRRGLAIDSKVDFFTFYIPHRHVYGDQWIQFMRDGVDAAPLPSVTT 50 | TQYPDDAGYVGTIVPKSNRIPKFLHQSYLNIYNNYFRAPWMPERTEANPS 51 | NLDRDDSRYGFRCCHLKTIWSAPLPPETKLAEQMGIESNSIDIMGLQAAY 52 | AQLHTEQERTYFMQRYRDVISSFGGSTSYDADNRPLLVMHTDFWASGYDV 53 | DGTDQSSLGQFSGRVQQTFKHSVPRFFVPEHGVMMTLMLVRFPPISPLEH 54 | HYLVGRNNLTYTDLAGDPALIGNLPPREISYQDLFRDGRPGIKIKVAESI 55 | WYRTHPDYVNYKYQLLEGFPFLDDAPGTTSGDDLQKAILIDHNDYNACFQ 56 | SQQLLQWNNQARYNVNVYRHIPTVRDSIMTS 57 | 58 | >fig|10845.2.peg.10 [Microvirus Enterobacteria phage St-1] [Phage capsid and scaffold] 59 | MYQNFVTKHDTAIQTSRFSVTGSITPVAPTGNIPVINAGNITAEHAVVNL 60 | YANLTAGTSSDGSFIVAMKVDTSPSDPNCVISAGVNLSFAGTSYPIVGIV 61 | RFESAFDQPTSIAGSQIEHYPIEMSVGSGGVCSARDCATVDIHPRTFGNN 62 | VFVGVICSSAKWTSGRVLGTIATTQVIREYQVLQPLK 63 | 64 | >fig|10845.2.peg.11 [Microvirus Enterobacteria phage St-1] [Phage capsid and scaffold] 65 | MLGSIIGGIGSSLLGGLASGGISSLLNKMFSKMPEHAASSAGLTNGQGTI 66 | GMDTDAGIQSAIQGSNVPPAGQLPASNTSGVMADAGNMIRNAGRALLDGT 67 | IQAGSDKVKEALIDKLVGGNDAKDRGKATRDYLAAAFPELNPWERAGADA 68 | STAGLESSAQNQQKEMLKMQLDNQKDIAKMQMNNNLQIAGIQSATSRQNT 69 | KDSVYAQNEMLQYNQRESQARVASILANTDLTTKQATHEIMRMALTRAQE 70 | TGQHLTNSQIMALEKKVYAEIGKIHQDTQNSRYGSSQVTAAAKDVTNMIT 71 | DASSGFADWASQQWNSFFKDGKSDGIPLNTRK 72 | 73 | -------------------------------------------------------------------------------- /old/genomes/10847.1.fas: -------------------------------------------------------------------------------- 1 | >fig|10847.1.peg.1 [Coliphage phiX174] [Phage protein] 2 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLCDLSPST 3 | NDSVKN 4 | 5 | >fig|10847.1.peg.2 [Coliphage phiX174] [DNA maturase, phage-associated] 6 | MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 7 | YESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS 8 | 9 | >fig|10847.1.peg.3 [Coliphage phiX174] [Phage capsid assembly] 10 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 11 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 12 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 13 | VM 14 | 15 | >fig|10847.1.peg.4 [Coliphage phiX174] [Phage endolysin] 16 | MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALNLRKTLLM 17 | ASSVRLKPLNCSRLPCVYAQETLTFLLTQKKTCVKNYVRKE 18 | 19 | >fig|10847.1.peg.5 [Coliphage phiX174] [core protein, DNA condensation protein] 20 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 21 | 22 | >fig|10847.1.peg.6 [Coliphage phiX174] [Phage major capsid protein #Fam0055] 23 | MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 24 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNT 25 | TGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPN 26 | ELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAY 27 | ANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSNLWASGYDV 28 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 29 | QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQ 30 | WYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQL 31 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 32 | 33 | >fig|10847.1.peg.7 [Coliphage phiX174] [Phage capsid and scaffold] 34 | MFQTFISRHNSNFFSDKLVLTSVTPASSAPVLQTPKATSSTLYFDSLTVN 35 | AGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVP 36 | TTLPTAYDVYPLNGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNF 37 | TATKCRGLVSLNQVIKEIICLQPLK 38 | 39 | >fig|10847.1.peg.8 [Coliphage phiX174] [Phage capsid and scaffold] 40 | MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDA 41 | GIKSAIQGSNVPNPDEAAPSFVSGAMAKAGKGLLEGTLQAGTSAVSDKLL 42 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGADASSAGMVDAGFEN 43 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 44 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 45 | MTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHG 46 | IDKAVADTWNNFWKDGKADGIGSNLSRK 47 | 48 | >fig|10847.1.peg.9 [Coliphage phiX174] [rf replication, viral strand synthesis protein] 49 | MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFHKQMDNR 50 | IKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQ 51 | CYNVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRD 52 | EYNYPKKKGIKDECSRLLEASTMKSRRGFAIQRLMNAMRQAHADGWFIVF 53 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKANDSHADCYQYF 54 | CVPEYGTANGRLHFHAVHFMRTLPTGSVDPNFGRRVRNRRQLNSLQNTWP 55 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 56 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNL 57 | STECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTT 58 | NLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTA 59 | CLRIKSKWTAGGK 60 | 61 | >fig|10847.1.peg.10 [Coliphage phiX174] [shut off host DNA synthesis protein] 62 | MKSRRGFAIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD 63 | YFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRT 64 | LPTGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 65 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 66 | KLSLLPKKLFRIRMSRNFGMKMLTMTNLSTECLIQLTKLGYDATPFNQIL 67 | KQNAKREMRLRLGKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQSFI 68 | ASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK 69 | 70 | >fig|10847.1.peg.11 [Coliphage phiX174] [Phage capsid assembly] 71 | MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGVLNPTYQAGLRR 72 | DAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWR 73 | IQPAEFYRFHDAEVNTFGYF 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/10848.1.fas: -------------------------------------------------------------------------------- 1 | >fig|10848.1.peg.1 [Coliphage phiK] [DNA replication protein, phage-associated] 2 | MATEIFSDVVKSVWSHATAKHAHLRMAVQVDNRSRLLSDLVYQLEKRLSE 3 | ETHLDDETYALYESQTGLLEDHMALVRKCAAQLDNSNTIDHRTPLDPECV 4 | FLFEMICPGVRYGKTLNSLWSKYAAQWPEKLIRQELDMVKPLSFKDEVAK 5 | YMEKMQEKTRKNRMTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNEN 6 | PNALRDYFRTVGRAVLRAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHV 7 | VHMVRTLPLGSHDPNFGRPVRNYRQINSFRGMWPYGFTQPIAVRYQHDAY 8 | SRKGWLWPVDKSGKAMQSKPYQAVAWYVTKYVAKQSDQRQKAITERQKKC 9 | KNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPLY 10 | QIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKAIRRLMKKTPEFNWQ 11 | SSIASMTVTLKNGDISDEARQYIIDAGITPTDLRAKATQTFGGK 12 | 13 | >fig|10848.1.peg.2 [Coliphage phiK] [Capsid morphogenesis protein] 14 | MQESINGNLSEERISGAQQPEAWNGAPVNGSPEQQSASGAESNQLRFQSS 15 | LSDSERERQKATDLEHRRAAFARHFGCAPGSEKHVESYSSFDEKDTRVQL 16 | AEFYRFNDGHLKKWGYF 17 | 18 | >fig|10848.1.peg.3 [Coliphage phiK] [Phage protein] 19 | MKHVNTLLMQELRLLICELKRLKLSAVSDPDFSQEKIHAELDSLLCKLSR 20 | HFD 21 | 22 | >fig|10848.1.peg.4 [Coliphage phiK] [DNA maturase, phage-associated] 23 | MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQWFQIED 24 | WKGNHKKLLDDLKRRDYL 25 | 26 | >fig|10848.1.peg.5 [Coliphage phiK] [Phage capsid assembly] 27 | MNIVSDVNYATSVAALRMLQASSVLDITEEDFDFLTGDKIWIATDRNRAR 28 | RCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLVMEGAE 29 | FSENIINGVERPVNAAELFAYTLRIKAGFKETVIDAEENARQKLRANGLK 30 | 31 | >fig|10848.1.peg.6 [Coliphage phiK] [Phage endolysin] 32 | MERWTLSAILAFLLLLSLLLPSLLIMFIPSTFRQHASLWKARSLAKTLLM 33 | ASSARLTPLSSSRTPCVLRQDSKKL 34 | 35 | >fig|10848.1.peg.7 [Coliphage phiK] [Phage protein] 36 | MKKARRSPSRRKGARLWYVGGSQF 37 | 38 | >fig|10848.1.peg.8 [Coliphage phiK] [Phage major capsid protein #Fam0055] 39 | MSNVQTSAEREIVDLSHLAFDCGMIGRLKTVSWTPVIAGDSFELDAVGAL 40 | RLSPLRRGLAIDSKVDFFTFYIPHRHVYGDQWIQFMRDGVDASPLPSVTT 41 | TKYPDDAGYVGTIVPKSNRIPKFLHQSYLNIYNNYFRAPWMPERTEANPS 42 | NLDRDDSRYGFRCCHLKTIWSAPLPPETKLAEQMGIESNSIDIMGLQAAY 43 | AQLHTEQERTYFMQRYRDVISSFGGSTSYDADNRPLLVMHTDFWASGYDV 44 | DGTDQSSLGQFSGRVQQTFKHSVPRFFVPEHGVMMTLMLVRFPPISPLEH 45 | HYLVGRNNLTYTDLAGDPALIGNLPPREISYQDLFRDGRPGIKIKVAESI 46 | WYRTHPDYVNYKYQLLEGFPFLDDAPGTTSGDDLQKAILIDHNDYNACFQ 47 | SQQLLQWNNQARYNVNVYRHIPTVRDSIMTS 48 | 49 | >fig|10848.1.peg.9 [Coliphage phiK] [Phage capsid and scaffold] 50 | MYQIFVTKHDTAIQTSRFSVTGSITPVAPTGNIPVINTGNITAEHAVVSL 51 | YANLTAGTSSDGSFIVAMKVDTSPADPNCVISAGVNLSFAGTSYPIVGIV 52 | RFESASDQPTSIAGSQIEHYPIEMSVGSGGVCSARDCVTVDIHPRAFGNN 53 | VFVGVICSSAKWTSGRVLGTIATTQVIREYQVLQPLK 54 | 55 | >fig|10848.1.peg.10 [Coliphage phiK] [Phage capsid and scaffold] 56 | MLGSIIGGIGSSLLGGIASGGISSLLNKMFSKMPEHAASSAGLTNGQGTI 57 | GMDTDAGIQSAIQGSNVPPAGQLPASNTSGVMADAGNMIRNAGRALLDGT 58 | IQAGSDKVKEALIDKLVGGNDAKDRGKATRDYLAAAFPELNPWERAGAGA 59 | STAGLESSAQNQQKEMLKMQLDNQKDIAKMQMNNNLQIAGIQSATSRQNT 60 | KDSVYAQNEMLQYNQRESQARVASILANTDLTTKQATHEIMRMALTRAQE 61 | TGQHLTNSQIMALEKKVYAEIGKIHQDTQNSRYGSSQVTAAAKDVTNMIT 62 | DASSGLADWASQQWDSFFKDGKSDGIPLNTRK 63 | 64 | -------------------------------------------------------------------------------- /old/genomes/10849.1.fas: -------------------------------------------------------------------------------- 1 | >fig|10849.1.peg.1 [Coliphage alpha3] [replication initiation protein] 2 | MATEIFSDVVKSVWSHATAKHAHLRMAVQVDNRSRLLSDLVYQLEKRLSE 3 | ETHLDDETLAIYESQTALLEDHMALVRKCAAQLDNSNTIDHRTPLDAECV 4 | FLFEMICPGVRYGKTLNSLWTKYVVQWPEKLIRQELDMVKPLSFKDEVAK 5 | YMEKMQEKTRKNRMTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNEN 6 | PNALRDYFRTVGRAVLRAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHV 7 | VHMVRTLPLGSHDPNFGRKVRNYRQINSFRGMWPYGFTQPIAVRYQHDAY 8 | SRKGWLWPVDKTGKAMQSKPYQAVAWYVTKYVAKQSDQRQKAITERQKKC 9 | KNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPLY 10 | QIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKTIRRLMKKTPEFNWQ 11 | SSIASMTVTLKNGDISDEARQYIIDAGITPTDLRAKATQTFGGK 12 | 13 | >fig|10849.1.peg.2 [Coliphage alpha3] [Phage capsid assembly] 14 | MQESINGNLSEERISGTQQSETRNGAPVNGSSEQQGTSGTEPNQLRFQSS 15 | VSDSERERQKAIDLEHRRAAFARHFGCAPGSEKHVENYSSFDEKDTRVQL 16 | AEFYRFNDGHFKKWGYF 17 | 18 | >fig|10849.1.peg.3 [Coliphage alpha3] [Phage protein] 19 | MKHVNTLLMQELRLLICELKRLRLSAVSDPDFSQEKIHAELDSLLCKLSR 20 | HFD 21 | 22 | >fig|10849.1.peg.4 [Coliphage alpha3] [DNA maturase, phage-associated] 23 | MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQWFQIED 24 | WKGNHKKLLDDLKKRDYL 25 | 26 | >fig|10849.1.peg.5 [Coliphage alpha3] [Phage capsid assembly] 27 | MNIVSDVNYATSVAALRMLQASAVLDVTEEDFDFLTGDKIWIATDRNRAR 28 | RCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNVQTACLVMEGAE 29 | FSENIINGVERPVNAAELFAYTLRIKAGFKETVMDAEENARQKLRANGLK 30 | 31 | >fig|10849.1.peg.6 [Coliphage alpha3] [Phage endolysin] 32 | MERWTLLDILAFLLLLSLLLPSLLIMFIPSMYKQHASLWKARSLAKTLSM 33 | ASSARLTPLSSSRTPCVLKQDSKKL 34 | 35 | >fig|10849.1.peg.7 [Coliphage alpha3] [Phage protein] 36 | MKKARRSPSRRKGARLWYVGGSQF 37 | 38 | >fig|10849.1.peg.8 [Coliphage alpha3] [Phage major capsid protein #Fam0055] 39 | MSNVQTSAEREIVDLSHLAFDCGMLGRLKTVSWTPVIAGDSFELDAVGAL 40 | RLSPLRRGLAIDSKVDFFTFYIPHRHVYGDQWIQFMRDGVNAQPLPSVTC 41 | NRYPDHAGYVGTIVPANNRIPKFLHQSYLNIYNNYFRAPWMPERTEANPS 42 | NLNEDDARYRFRCCHLKNIWSAPLPPETKLAEEMGIESNSIDIMGLQAAY 43 | AQLHTEQERTYFMQRYRDVISSFGGSTSYDADNRPLLVMHTDFWASGYDV 44 | DGTDQSSLGQFSGRVQQTFKHSVPRFFVPEHGVMMTLALIRFPPISPLEH 45 | HYLAGKSQLTYTDLAGDPALIGNLPPREISYRDLFRDGRSGIKIKVAESI 46 | WYRTHPDYVNFKYHDLHGFPFLDDAPGTSTGDNLQEAILVRHQDYDACFQ 47 | SQQLLQWNKQARYNVSVYRHMPTVRDSIMTS 48 | 49 | >fig|10849.1.peg.9 [Coliphage alpha3] [Phage capsid and scaffold] 50 | MYQNFVTKHDTAIQTSRFSVTGNVIPAAPTGNIPVINGGSITAERAVVNL 51 | YANMNVSTSSDGSFIVAMKVDTSPTDPNCVISAGVNLSFAGTSYPIVGIV 52 | RFESASEQPTSIAGSEVEHYPIEMSVGSGGVCSARDCATVDIHPRTSGNN 53 | VFVGVICSSAKWTSGRVIGTIATTQVIHEYQVLQPLK 54 | 55 | >fig|10849.1.peg.10 [Coliphage alpha3] [Phage capsid and scaffold] 56 | MLGAVVGGIASALASGAASKLFGGSQRGVSVMQQGAESAGLTNGGGAISM 57 | DNDQGIQSAIQGSNVPPAGQLPESQNSGVMADAGNMLRNAGKSLLDGTIQ 58 | AGSDKVKQALIDKLIGGNDAKDRGKATRDYLAAAFPELNPWERAGAGAST 59 | AGLESSAQNQQKEMLKMQLDNQKDIAKMQMDNNLQIAGIQSATSRQNTKD 60 | SVYAQNEMLQYNQRESQARVASILANTDLTTKQATHEIMRMALTRAQETG 61 | QHLTNSQIMALEKKVYAEIGKIHQDTQNSRYGSSQVTAAAKDVTNMITDA 62 | ASGASDWVSQQWNSFFKDGKSNGISLNTRK 63 | 64 | -------------------------------------------------------------------------------- /old/genomes/10854.1.fas: -------------------------------------------------------------------------------- 1 | >fig|10854.1.peg.1 [Spiroplasma phage 1-R8A2B] [Phage protein] 2 | MINLLVENNNSNWDKIFSFVFDIFLFIFDVIWNTKLPMTNTSIAYFLIFF 3 | MVIKLSIYAIHGTSTQYNNLGSTVNNGVSQVYSSTVRGVSDTKQGMQKHI 4 | KERKQFKINRNKKQLSSLAKQAKTREQGYRRVHK 5 | 6 | >fig|10854.1.peg.2 [Spiroplasma phage 1-R8A2B] [Phage protein] 7 | MIKLVLLVAAIAIFGTGFITVIINQFTSAKNIIMDLYNSDTWLIWLFGRM 8 | AVLFSHPLMLTISSLYIVGFIVSKTLYS 9 | 10 | >fig|10854.1.peg.3 [Spiroplasma phage 1-R8A2B] [Phage capsid protein #Fam0081] 11 | MKKSLSLFAIFILTFLGLVIPFITLTAFRPLNEEQYTLKQESSTGKGINE 12 | TDFINTMFLRSSFFENWSETNYFINPTLKTSKNLLFNDKWYLDFLQDSYS 13 | TGVVYDKPGEIFLNYYRQWHSLKNKYMVEKFYDVKKENFLNDLTDFIYAF 14 | AVKYKMFDVSKEIVENVDRYKENHYPRVKLKQDNWKLITDYNWLKDNFDN 15 | KYYFVIWKQSYSKEWEIMKFKHNMRYDMKIESYIKNNSFKGLYRWDGDGE 16 | PQTPTIDKNTGEITDWNSYQQSRVKQFIDLSLYSVLQENIRVQQGGSADY 17 | ENPNKVGTKRIIFDFETVDELDVKNIKKAIYRMILTVDEANLIISGSLEL 18 | NNINNDDLSFNFSFMRTGMGEVFNFNGSIYSSLNSKDLKYYQQFSGQFDL 19 | SKFLQSFFASALVPVFQNRSLFIENGYIDNLQYDTVLVNFFALKLQNFNN 20 | ILLIENINDKLQFDKLLNSMFKISQKFYTNYLRTIFDLENNTYVQGYNKK 21 | YGLLVNNGFKIYPRYFYFSDKYKQLDIKLYSAFKNRFYTINNYGSVFNYD 22 | FSVANNYNIKLNSGYVFGGDLQNKYGLQYKKIEEQKIGYNVFELQAQKEN 23 | DMYRYYDFNFGIYNWQEINNGGLFPDKQWWQVQYVTPKGWWDFGAHIKNA 24 | VIWIVNTIPGVKQVNELASGVGKVFETVYSFFSQIFEVWKFNPALYSTIT 25 | NIFLLIIFMKFVRLI 26 | 27 | >fig|10854.1.peg.4 [Spiroplasma phage 1-R8A2B] [putative transposase] 28 | MYSHLSFMDKVKLEQLLLSKIFLKKNGEQNISAIAKYLNRHRSTILREIK 29 | RFKTIDEYSAYKSDKMYYEKRKKNNKRFKFTEEQLNFIHLRFNVYHDSPS 30 | ELIYRYFLKFKVKFPVCVKTLYKWIRLGFYGFLKQNLRHHGKKYKRKGKS 31 | DNRGKLTDFKSIWDIDNKVSNVGWLEMDTVVGKDHKSAILVLVEQLSKKY 32 | FAIKLENHTAREVEKKFKDIIIKNNLIGKIKGIITDRRKEFSKWREMEIF 33 | AETQVYFCDAGSPQQKPLIEYMNSELRHWFPKGTDFNKVSQKQIDWVVNV 34 | INDKLRPCLNWISSKEMFLQNI 35 | 36 | >fig|10854.1.peg.5 [Spiroplasma phage 1-R8A2B] [Phage protein] 37 | MPTWLTTIFSVVIVLAIFLYFGLLIYQKIRQIRGKKKDKKEIERKESNK 38 | 39 | >fig|10854.1.peg.6 [Spiroplasma phage 1-R8A2B] [Phage protein] 40 | MLGMYLTTAFNFLTASTPKTMSEGMTGIWTGLSSALWKVKEGITNILPEI 41 | MVFLGEAWIILIPFAIFCIIKILNFFRVMVKGF 42 | 43 | >fig|10854.1.peg.7 [Spiroplasma phage 1-R8A2B] [Phage protein] 44 | MVFSLYKNIYKFVNLLKIWIINLKVIIKIIISEIIVLIGNTIHDNQKIDG 45 | ITFVKNEFIISSIFYFFFLFKIIYTERKP 46 | 47 | >fig|10854.1.peg.8 [Spiroplasma phage 1-R8A2B] [Phage protein] 48 | MDMKFWTTKEYKKIKRDFIIRNFAFGFCYFLFLISFIMCIVCFIISINFE 49 | VEIILVILFPFLLLILSVWNLFDLIMEHISEIKRFKVTVLKKQIEELEGK 50 | MLRGLRVGVDKIE 51 | 52 | >fig|10854.1.peg.9 [Spiroplasma phage 1-R8A2B] [Phage protein] 53 | MSNFVKKNHNVENYFISKEFIPFTTEKASFINLPNHNRHIGFWLSNKFIY 54 | PSEKHSKQVAIGLIYDNSYPIVKYDENLKRHIWKYLTGTELINLYNQYKQ 55 | NYFTKMKKALFSSEPKKVKANNNNNNLTNWSVEKEQELINDLKDLN 56 | 57 | >fig|10854.1.peg.10 [Spiroplasma phage 1-R8A2B] [Phage protein] 58 | MIIEFNLLVILLVQMPLSFYMLYRLCYLLFCFLECFLNLFKKCGVFKNAK 59 | WLN 60 | 61 | >fig|10854.1.peg.11 [Spiroplasma phage 1-R8A2B] [Phage protein] 62 | MQNDWIKLKEFFIYIFLFIDKTNVESITMWNLTQNEYLTLMVGVWIVILF 63 | LTWFLLWMVFKIVGYFK 64 | 65 | >fig|10854.1.peg.12 [Spiroplasma phage 1-R8A2B] [Phage protein] 66 | MKKFIFFFKNYCYISGSMLLFSLIDLLLWIISLYCVGLVFWILFVLQCIY 67 | FVWWLWKNIFYQLNSFGLVNFVWDNPLSVIIGKLGTGKTLLLTYLSQTMK 68 | LLTDEIYSNYPLEDDKVKVLTFKNLDFTDRTKPVPPDDSVILFDESYLYI 69 | DGTSPHDEKKVHSGKIPWIVLARHFGNRALFTAQREGMIWNNIRQLASGI 70 | IIPISLKKPVIKKGFNFFNRFFIMQIGIFQDITDYEIWKTKSVERTAEGK 71 | RVKHKSDVGLGIRFFKIIIPLEFANKYDSQWLKFVRDLKNDEIVNKKEYY 72 | WSEITKLSVKERLELFDIDILKKNLKPKKEKGNGKDD 73 | 74 | -------------------------------------------------------------------------------- /old/genomes/10855.1.fas: -------------------------------------------------------------------------------- 1 | >fig|10855.1.peg.1 [Spiroplasma phage 4] [Phage protein] 2 | MRRKVKNTKRHQWRLTHSARSIKRANIMPSNPRGGRRF 3 | 4 | >fig|10855.1.peg.2 [Spiroplasma phage 4] [Phage protein] 5 | MAYRGFKTSRVVKHRVRRRWFNHRRRYR 6 | 7 | >fig|10855.1.peg.3 [Spiroplasma phage 4] [Phage protein] 8 | MKLSKKKMQRIDNTLEKLFEWSHLNGYDNWLTNQLALEKEIEQGYRCETC 9 | KLVIKSVNKDEIVCKCINEKR 10 | 11 | >fig|10855.1.peg.4 [Spiroplasma phage 4] [Phage protein] 12 | MRNVNNKFFEIKQRKENIMDKLISLKDVMRFIFKFGLPGLCIAVGLIVMV 13 | ANKWLGIPWPCYVIVGSVSLSFGLILFIVQTIKEIIIYRKEKKDENIYSK 14 | K 15 | 16 | >fig|10855.1.peg.5 [Spiroplasma phage 4] [Phage protein] 17 | MKIYTQRNNKVEFSDSGSSEYSEYQRVIDADTKENTYEIVATYNRYDEIQ 18 | EAGEGTDLRSMLDKYGDDYLELLPPARLGGDDTILPKSVLELENIRLQNT 19 | EYLSLLENINSKLDKQGLGDLDNFIKNWQESQKKIENEKGKKEDEKENE 20 | 21 | >fig|10855.1.peg.6 [Spiroplasma phage 4] [Phage capsid protein #Fam0039] 22 | MKKKMSKLNARVHDFSMFKGNHIPRSKIHIPHKTIRAFNVGEIIPIYQTP 23 | VYPGEHIKMDLTSLYRPSTFIVPPMDDLIVDTYAFAVPWRIVWKDLEKFF 24 | GENSDSWDVKNAPPVPDIVAPSGGWDYGTLADHFGITPKVPGIRVKSLRF 25 | RAYAKIINDWFRDQNLSSECALTLDSSNSQGSNGSNQVTDIQLGGKPYIA 26 | NKYHDYFTSCLPAPQKGAPTTLNVGGMAPVTTKFRDVPNLSGTPLIFRDN 27 | KGRTIKTGQLGIGPVDAGFLVAQNTAQAANGERAIPSNLWADLSNATGIS 28 | ISDLRLAITYQHYKEMDARGGTRYVEFTLNHFGVHTADARLQRSEFLGGH 29 | SQSLLVQSVPQTSSTVEKMTPQGNLAAFSETMIQNNYLVNKTFTEHSYII 30 | VLAVVRYKHTYQQGIEADWFRGQDKFDMYDPLLANISEQPVKNREIMVQG 31 | NSQDNEIFGFQEAWADLRFKPNSVAGVMRSSHPQSLDYWHFADHYAQLPK 32 | LSSEWLKEDYKNVDRTLALKASDNTPQLRVDFMFNTIAEKPMPLYSTPGL 33 | RRI 34 | 35 | >fig|10855.1.peg.7 [Spiroplasma phage 4] [Phage capsid and scaffold] 36 | MGPLLGMVGAGAAGSAIGEGLGMLRDKWNRDFQERMSNTQYQRARKDMEA 37 | AGINPLAQFGSGQASSPSGGVSGSSFGSNITSMLGSSANMLMQLSKLKED 38 | AERANFGSKTVQTINDARNNMVRSVITLSKRVK 39 | 40 | >fig|10855.1.peg.8 [Spiroplasma phage 4] [Phage protein] 41 | MACLRPLQVHNLKKGEKVNFKHYSNGDVARYDMNKNYIVNDSVPCRKCVG 42 | CRLDNSAEWGVRASLEIKSNPKHNWFVTLTYSDEHLVYNALGRPNCVPEH 43 | ITKFIKSLRKYFERRGHIGIKYLASNEYGTKRMRPHYHICFFNLPLDDLE 44 | KTIDSQKGYQQWTSKTISRFWDKGFHTIGELTYHSANYTARYTTKKLGVK 45 | DYKALQLVPEKLRMSKGIGLKYFMENKERIYKEDSVLISTDKGIKRFKVP 46 | KYFDRRMEREWQDEFYLDYIKEKREKVAKRTLFQRQIVSSRSYTDYLGDE 47 | QKKLNNIVKRLTRPLKTGKK 48 | 49 | >fig|10855.1.peg.9 [Spiroplasma phage 4] [Phage protein] 50 | MEMLHDMIWIKIILLMIVCLVVSVLVVVWIILLSEVFVLLWKLSQILNII 51 | DLLL 52 | 53 | -------------------------------------------------------------------------------- /old/genomes/10862.3.fas: -------------------------------------------------------------------------------- 1 | >fig|10862.3.peg.1 [Xanthomonas phage Cf1c] [Phi-Lf prophage-derived helix-destabilizing protein] 2 | MKVQIMSSAVAIRSFPARDGKPATHFREQTAAVLREGDFPLPFTISLDED 3 | QAPYGEGFYVIDPKSMQNNKYGGLEFGRRIRLIPDATAKAAQPAARVS 4 | 5 | >fig|10862.3.peg.2 [Xanthomonas phage Cf1c] [Phage capsid and scaffold] 6 | MEKNISTVVTKAKSAVSNAKTAAILGSTALMAMPGFAFASGGGGDFDGTA 7 | IIGKVTTYTAIGVTILAPSRSVVGRFATRSDRRQVSQSAA 8 | 9 | >fig|10862.3.peg.3 [Xanthomonas phage Cf1c] [Phage-related protein] 10 | MPRTCAQRAGTDARARRIFARAVVRRIAYVVVAACFGLLLQLCSGSAHAA 11 | VDQGEAYSLCMKFASDMVAKNPDMRRNPSCRSRRAFQYTCQYEAIPYVGX 12 | SQWSVDTCGDYSYDDQYTCASRNSNKLADAAPWYTPPPNCISGCQVQGTS 13 | FSGDNGGVKTYGMKDRTYNGSICTPTKPTNDIGELQEEKNDATKEKAPEC 14 | TALGSGQTACLKPNGDYCATASSGKTFCWKPAETGKKTDATDAQSKTPKG 15 | DPVTPPPIPPPDGEWQRKEGHQQTTCVNNTCTTYNVTNYTTVPSGTSKNG 16 | TGDNSADGSGNTSGNGSNSGTGKKDDDSKDSATDSGNCDAPPICVGDTLK 17 | CLQLKFTWKIDCNTRGNEITQGDSCADGDVPVCAGKSCKAEAYAQVVQQW 18 | KQLRCRGDGAGDGLACRCY 19 | 20 | >fig|10862.3.peg.4 [Xanthomonas phage Cf1c] [Phage-related protein] 21 | MIGDTASISLLTGLPGSGKSLRIIQAIRYLMDKGAHVYVCNIDGISVPGT 22 | TPWADPHKWQDLPAGSILFVDEAQHFFPARRGGDPVETIKAMSTIRHDGV 23 | RLVLATQQPNYLDTYLRGLVGYHEHLLRQSGKQKTFIFRNSQIIEEVRSP 24 | LPRIKKLYDYEVWKQPTECFKFYKSAEVHTMKYQMPALVKKALMILPVVA 25 | LLAGGAWYAVYRDTMFAKKADAAPANKTAPSGPSLAGTASAGAAARPKVN 26 | SAEDYVGQLVPLVADVPWSAPAYVDRPVVSDPHVYCMATENTCRCVTEQN 27 | SRVVMRDDVCRDIARWGEPYNPYKPPHSPAQKQQDSPVAEATQPKPQVPQ 28 | QSGAVSSSVQRATRSLGTFPESPPYQTTTYTPPTTRDL 29 | 30 | >fig|10862.3.peg.5 [Xanthomonas phage Cf1c] [TrbP protein] 31 | MSSSARELLKWIALVCMTFDHVAKVFYDGYVPVLSELGRIAFPLFALVMA 32 | YNLAQPGADVGKSVRRLVCWGLLAQPFHAWAFGYWVPVNVLLAFALAAAA 33 | VWAIQRGRWVLLMLCAAPAPLFVDYQWTGIALVVAGWAYYAKVMRTPIPV 34 | VMALGALCWFNGSLWALLAIPIIALSEAVTNRGMAIPRTRLGFYGYYVGH 35 | LAILGLLALKPALIS 36 | 37 | >fig|10862.3.peg.6 [Xanthomonas phage Cf1c] [Phage protein] 38 | MEARFAMLLALAIVVPCHAQQVHKCRERGQVVYQSAPCASGQAQKVWDAA 39 | PAPEQSNAEQWRLYRIRKQLDSRYAADRSASAAAYVSGPQSSNACESAKA 40 | QRKQVYDAAGLHRSYEISSYWDNVVQNACK 41 | 42 | >fig|10862.3.peg.7 [Xanthomonas phage Cf1c] [Phage-related protein] 43 | MTLDTYDRVDLTGPWAGFGFQGHRFFTPENYDIEPCDMRYWALTCAIARE 44 | WSLLMSEERNARSANPRKPTATRSPGSRLSRGADVIYLRDVLLQRREKRL 45 | SVVDGAGSADRAQVVRRTRGPRAPRRG 46 | 47 | >fig|10862.3.peg.8 [Xanthomonas phage Cf1c] [Phage-related protein] 48 | MYSFHCPLCQEKPVMDHVNNLLDTVRKSCAIPSDNMLSKKIGVTRALISG 49 | WRVGRYPVPDARIAELYAMAHLDGGEWMAKIHAEAAASPAEKALWRSVLD 50 | RLSAAAAVVALLVLAVHTGAHEALLAALSPVAVTHPLYIMRSVLLTLLCA 51 | LAAYHCWSLHRKRTGQ 52 | 53 | >fig|10862.3.peg.9 [Xanthomonas phage Cf1c] [Replication initiation protein] 54 | MADGTCSFCGDTTAYFFPGGLCVACTSKNARIRMHEQPTQSRELSAFDAS 55 | VGVMQAATRRTEIAAEKIQKNKRVVGTSVREFDAAHPIALTAEGXALALG 56 | LVHYKTSDTRASTTGTVTIEIDPLQARAQRLRKSVITGARLHDQEAKKGS 57 | FRGAWYFLTLTYRDGSDSSPRDVSELFKRMRGHFNRLKSGRARWNRESFR 58 | YVWVGELTQRFRPHYHVMLWVPTGMYFGKVDQRGWWPHGTTQIEKARNCV 59 | GYLAKYASKFTALTAGAFPKGFRTHGIGGLDTESKRELPWWKAPKDAREA 60 | LGGEADIRKAKGGWFDRLTGEFWPSPWKVTFIFGRTFAWKVVPL 61 | 62 | -------------------------------------------------------------------------------- /old/genomes/10863.2.fas: -------------------------------------------------------------------------------- 1 | >fig|10863.2.peg.1 [Inovirus Enterobacteria phage f1] [Phage protein] 2 | MIDMLVLRLPFIDSLVCSRLSGNDLIAFVDLSKIATLSGMNLSARTVEYH 3 | IDGDLTVSGLSHPFESLPTHYSGIAFKIYEGSKNFYPCVEIKASPAKVLQ 4 | GHNVFGTTDLALCSEALLLNFANSLPCLYDLLDVNATTISRIDATFSARA 5 | PNENIAKQVIDHLRNVSNGQTKSTRSQNWESTVTWNETSRHRTLVAYLKH 6 | VELQHQIQQLSSKPSAKMTSYQKEQLKLLSNPDLLEFASGLVRFEARIKT 7 | RYLKSFGLPLNLFDAIRFASDYNSQGKDLIFDLWSFSFSELFKAFEGDSM 8 | NIYDDSAVLDAIQSKHFTITPSGKTSFAKASRYFGFYRRLVNEGYDSVAL 9 | TMPRNSFWRYVSALVECGIPKSQLMNLSTCNNVVPLVRFINVDFSSQRPD 10 | WYNEPVLKIA 11 | 12 | >fig|10863.2.peg.2 [Inovirus Enterobacteria phage f1] [Phage protein] 13 | MNIYDDSAVLDAIQSKHFTITPSGKTSFAKASRYFGFYRRLVNEGYDSVA 14 | LTMPRNSFWRYVSALVECGIPKSQLMNLSTCNNVVPLVRFINVDFSSQRP 15 | DWYNEPVLKIA 16 | 17 | >fig|10863.2.peg.3 [Inovirus Enterobacteria phage f1] [Phage protein] 18 | MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEYPVLVKITLD 19 | EGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPAK 20 | 21 | >fig|10863.2.peg.4 [Inovirus Enterobacteria phage f1] [Phage capsid and scaffold] 22 | MEQVADFDTIYQAMIQISVVLCFALGIIAGGQR 23 | 24 | >fig|10863.2.peg.5 [Inovirus Enterobacteria phage f1] [gene IX structural protein of virion.] 25 | MSVLVYSFASFVLGWCLRSGITYFTRLMETSS 26 | 27 | >fig|10863.2.peg.6 [Inovirus Enterobacteria phage f1] [Phage major capsid protein #Fam0025] 28 | MKKSLVLKASVAVATLVPMLSFAAEGDDPAKAAFDSLQASATEYIGYAWA 29 | MVVVIVGATTGIKLFKKFTSKAS 30 | 31 | >fig|10863.2.peg.7 [Inovirus Enterobacteria phage f1] [G III capsid protein precursor; gtg start] 32 | MKKLLFAIPLVVPFYSHSAETVESCLAKPHTENSFTNVWKDDKTLDRYAN 33 | YEGCLWNATGVVVCTGDETQCYGTWVPIGLAIPENEGGGSEGGGSEGGGS 34 | EGGGTKPPEYGDTPIPGYTYINPLDGTYPPGTEQNPANPNPSLEESQPLN 35 | TFMFQNNRFRNRQGALTVYTGTVTQGTDPVKTYYQYTPVSSKAMYDAYWN 36 | GKFRDCAFHSGFNEDPFVCEYQGQSSDLPQPPVNAGGGSGGGSGGGSEGG 37 | GSEGGGSEGGGSEGGGSGGGSGSGDFDYEKMANANKGAMTENADENALQS 38 | DAKGKLDSVATDYGAAIDGFIGDVSGLANGNGATGDFAGSNSQMAQVGDG 39 | DNSPLMNNFRQYLPSLPQSVECRPFVFGAGKPYEFSIDCDKINLFRGVFA 40 | FLLYVATFMYVFSTFANILRNKES 41 | 42 | >fig|10863.2.peg.8 [Inovirus Enterobacteria phage f1] [Phage capsid and scaffold] 43 | MPVLLGIPLLLRFLGFLLVTLFGYLLTFLKKGFGKIAIAISLFLALIIGL 44 | NSILVGYLSDISAQLPSDFVQGVQLILPSNALPCFYVILSVKAAIFIFDV 45 | KQKIVSYLDWDK 46 | 47 | >fig|10863.2.peg.9 [Inovirus Enterobacteria phage f1] [Phage maturase] 48 | MAVYFVTGKLGSGKTLVSVGKIQDKIVAGCKIATNLDLRLQNLPQVGRFA 49 | KTPRVLRIPDKPSISDLLAIGRGNDSYDENKNGLLVLDECGTWFNTRSWN 50 | DKERQPIIDWFLHARKLGWDIIFLVQDLSIVDKQARSALAENVVYCRRLD 51 | RITLPFVGTLYSLITGSKMPLPKLHVGVVKYGDSQLSPTVERWLYTGKNL 52 | YNAYDTKQAFSSNYDSGVYSYLTPYLSHGRYFKPLNLGQKMKLTKIYLKK 53 | FSRVLCLAIGFASAFTYSYITQPKPEVKKVVSQTYDFDKFTIDSSQRLNL 54 | SYRYVFKDSKGKLINSDDLQKQGYSLTYIDLCTVSIKKGNSNEIVKCN 55 | 56 | >fig|10863.2.peg.10 [Inovirus Enterobacteria phage f1] [Phage protein] 57 | MKLLNVINFVFLMFVSSSSFAQVIEMNNSPLRDFVTWYSKQTGESVIVSP 58 | DVKGTVTVYSSDVKPENLRNFFISVLRANNFDMVGSNPSIIQKYNPNNQD 59 | YIDELPSSDNQEYDDNSAPSGGFFVPQNDNVTQTFKINNVRAKDLIRVVE 60 | LFVKSNTSKSSNVLSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILI 61 | EGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDRLTSVLSSAGGSFGIFN 62 | GDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTG 63 | ESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQA 64 | SDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGL 65 | LFSSRSDSNEESTLYVLVKATIVRAL 66 | 67 | -------------------------------------------------------------------------------- /old/genomes/10864.2.fas: -------------------------------------------------------------------------------- 1 | >fig|10864.2.peg.1 [Inovirus Enterobacteria phage fd] [Phage protein] 2 | MIDMLVLRLPFIDSLVCSRLSGNDLIAFVDLSKIATLSGMNLSARTVEYH 3 | IDGDLTVSGLSHPFESLPTHYSGIAFKIYEGSKNFYPCVEIKASPAKVLQ 4 | GHNVFGTTDLALCSEALLLNFANSLPCLYDLLDVNATTISRIDATFSARA 5 | PNENIAKQVIDHLRNVSNGQTKSTRSQNWESTVTWNETSRHRTLVAYLKH 6 | VELQHQIQQLSSKPSAKMTSYQKEQLKVLSNPDLLEFASGLVRFEARIET 7 | RYLKSFGLPLNLFDAIRFASDYNRQGKDLIFDLWSFSFSELFKAFEGDSM 8 | NIYDDSAVLDAIQSKHFTITPSGKTSFAKASRYFGFYRRLVNEGYDSVAL 9 | TMPRNSFWRYVSALVECGIPKSQLMNLSTCNNVVPLVRFINVDFSSQRPD 10 | WYNEPVLKIA 11 | 12 | >fig|10864.2.peg.2 [Inovirus Enterobacteria phage fd] [Phage protein] 13 | MNIYDDSAVLDAIQSKHFTITPSGKTSFAKASRYFGFYRRLVNEGYDSVA 14 | LTMPRNSFWRYVSALVECGIPKSQLMNLSTCNNVVPLVRFINVDFSSQRP 15 | DWYNEPVLKIA 16 | 17 | >fig|10864.2.peg.3 [Inovirus Enterobacteria phage fd] [Phage protein] 18 | MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEYPVLVKITLD 19 | EGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPAK 20 | 21 | >fig|10864.2.peg.4 [Inovirus Enterobacteria phage fd] [Phage capsid and scaffold] 22 | MEQVADFDTIYQAMIQISVVLCFALGIIAGGQR 23 | 24 | >fig|10864.2.peg.5 [Inovirus Enterobacteria phage fd] [gene IX structural protein of virion.] 25 | MSVLVYSFASFVLGWCLRSGITYFTRLMETSS 26 | 27 | >fig|10864.2.peg.6 [Inovirus Enterobacteria phage fd] [Phage major capsid protein #Fam0025] 28 | MKKSLVLKASVAVATLVPMLSFAAEGDDPAKAAFDSLQASATEYIGYAWA 29 | MVVVIVGATIGIKLFKKFTSKAS 30 | 31 | >fig|10864.2.peg.7 [Inovirus Enterobacteria phage fd] [G III capsid protein precursor; gtg start] 32 | MKKLLFAIPLVVPFYSHSAETVESCLAKPHTENSFTNVWKDDKTLDRYAN 33 | YEGCLWNATGVVVCTGDETQCYGTWVPIGLAIPENEGGGSEGGGSEGGGS 34 | EGGGTKPPEYGDTPIPGYTYINPLDGTYPPGTEQNPANPNPSLEESQPLN 35 | TFMFQNNRFRNRQGALTVYTGTVTQGTDPVKTYYQYTPVSSKAMYDAYWN 36 | GKFRDCAFHSGFNEDPFVCEYQGQSSDLPQPPVNAGGGSGGGSGGGSEGG 37 | GSEGGGSEGGGSEGGGSGGGSGSGDFDYEKMANANKGAMTENADENALQS 38 | DAKGKLDSVATDYGAAIDGFIGDVSGLANGNGATGDFAGSNSQMAQVGDG 39 | DNSPLMNNFRQYLPSLPQSVECRPYVFGAGKPYEFSIDCDKINLFRGVFA 40 | FLLYVATFMYVFSTFANILRNKES 41 | 42 | >fig|10864.2.peg.8 [Inovirus Enterobacteria phage fd] [Phage capsid and scaffold] 43 | MPVLLGIPLLLRFLGFLLVTLFGYLLTFLKKGFGKIAIAISLFLALIIGL 44 | NSILVGYLSDISAQLPSDFVQGVQLILPSNALPCFYVILSVKAAIFIFDV 45 | KQKIVSYLDWDK 46 | 47 | >fig|10864.2.peg.9 [Inovirus Enterobacteria phage fd] [Phage protein] 48 | MAVYFVTGKLGSGKTLVSVGKIQDKIVAGCKIATNLDLRLQNLPQVGRFA 49 | KTPRVLRIPDKPSISDLLAIGRGNDSYDENKNGLLVLDECGTWFNTRSWN 50 | DKERQPIIDWFLHARKLGWDIIFLVQDLSIVDKQARSALAEHVVYCRRLD 51 | RITLPFVGTLYSLVTGSKMPLPKLHVGVVKYGDSQLSPTVERWLYTGKNL 52 | YNAYDTKQAFSSNYDSGVYSYLTPYLSHGRYFKPLNLGQKMKLTKIYLKK 53 | FSRVLCLAIGFASAFTYSYITQPKPEVKKVVSQTYDFDKFTIDSSQRLNL 54 | SYRYVFKDSKGKLINSDDLQKQGYSITYIDLCTVSIKKGNSNEIVKCN 55 | 56 | >fig|10864.2.peg.10 [Inovirus Enterobacteria phage fd] [Phage protein] 57 | MKLLNVINFVFLMFVSSSSFAQVIEMNNSPLRDFVTWYSKQTGESVIVSP 58 | DVKGTVTVYSSDVKPENLRNFFISVLRANNFDMVGSIPSIIQKYNPNSQD 59 | YIDELPSSDIQEYDDNSAPSGGFFVPQNDNVTQTFKINNVRAKDLIRVVE 60 | LFVKSNTSKSSNVLSVDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILI 61 | EGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDRLTSVLSSAGGSFGIFN 62 | GDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTG 63 | ESANVNNPFQTVERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQA 64 | SDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGL 65 | LFSSRSDSNEESTLYVLVKATIVRAL 66 | 67 | -------------------------------------------------------------------------------- /old/genomes/10867.1.fas: -------------------------------------------------------------------------------- 1 | >fig|10867.1.peg.1 [Enterobacteria phage Ike] [Phage protein] 2 | MIDMLVLRIPFKSSLVSERLDSKGNYVSHVNLAEVARLSGLTLAAHTVEY 3 | AIDGDLTVSGLKHPYESLPSHYAGIALKIFEGGKNFEPCVELKASPAKLL 4 | QGHNVFGPTSFELCGLEFFGAFAAAMPELYDLCDVTNTVVGRIDVTFSAK 5 | VANDHIANQVISFLRNVSNGQTKKTRALDYETTVMWNEGSRHRTLVAYLK 6 | HHEVQAQIKRLQKKKSSHLTIYEKNCLEVLSNPDLQLYAVGLVRFEARLH 7 | TRFFENFGLPRKFFDIVKYQDNYESGSFNLICDLWKKSFKDLFDAFKGSD 8 | MNVYDDSKVYDALINNFSSVTKSGNISNSKANRLFGFYRRLVNEGYDNVA 9 | QTMERTTFWRSLKELTSVGLSKAQLMNLSTDNNVVPLVQMINVDFSQQYP 10 | EWYVEPVSIFNRSNVVSINAA 11 | 12 | >fig|10867.1.peg.2 [Enterobacteria phage Ike] [Phage protein] 13 | MNVYDDSKVYDALINNFSSVTKSGNISNSKANRLFGFYRRLVNEGYDNVA 14 | QTMERTTFWRSLKELTSVGLSKAQLMNLSTDNNVVPLVQMINVDFSQQYP 15 | EWYVEPVSIFNRSNVVSINAA 16 | 17 | >fig|10867.1.peg.3 [Enterobacteria phage Ike] [Phage protein] 18 | MLTVEIHDSQVSVKERSGVSQKSGKPYTIREQEAYIDLGGVYPALFNFNL 19 | EDGQQPYPAGKYRLHPASFKINNFGQVAVGRVLLESVK 20 | 21 | >fig|10867.1.peg.4 [Enterobacteria phage Ike] [Phage capsid and scaffold] 22 | MSMTSDDIIYVVFALGLVVSFGLGAITAGVFR 23 | 24 | >fig|10867.1.peg.5 [Enterobacteria phage Ike] [Phage capsid and scaffold] 25 | MIDYVGSFLGAYFLGFALFYGIGFFKSISNRII 26 | 27 | >fig|10867.1.peg.6 [Enterobacteria phage Ike] [Phage major capsid protein #Fam0025] 28 | MRVLSTVLAAKNKIALGAATMLVSAGSFAAEPNAATNYATEAMDSLKTQA 29 | IDLISQTWPVVTTVVVAGLVIRLFKKFSSKAV 30 | 31 | >fig|10867.1.peg.7 [Enterobacteria phage Ike] [G III capsid protein precursor; gtg start] 32 | MKRKIIAISLFLYIPLSNADNWESITKSYYTGFAISKTVESKDKDGKPVR 33 | KEVITQADLTTACNDAKASAQNVFNQIKLTLSGTWPNSQFRLVTGDTCVY 34 | NGSPGEKTESWSIRAQVEGDIQRSVPDEEPSEQTPEEICEAKPPIDGVFN 35 | NVFKGDEGGFYINYNGCEYEATGVTVCQNDGTVCSSSAWKPTGYVPESGE 36 | PSSSPLKDGDTGGTGEGGSDTGGDTGGGDTGGGSTGGDTGGSSGGGSSGG 37 | GSSGGSTGKSLTKEDVTAAIHVASPSIGDAVKDSLTEDNDQYDNQKKADE 38 | QSAKASASVSDAISDGMRGVGNFVDDFGGESSQYGTGNSEMDLSVSLAKG 39 | QLGIDREGHGSAWESFLNDGALRPSIPTGHGCTNFVMYQGSVYQIEIGCD 40 | KLNDIKSVLSWVMYCLTFWYVFQSVTSLLRKGEQ 41 | 42 | >fig|10867.1.peg.8 [Enterobacteria phage Ike] [Phage capsid and scaffold] 43 | MPALLGIPALIRFIMGLVPIAIGYFAKFLGMIITRNGLMASALIGAILSV 44 | VSFSIQLLGDALSSSMGGISADFGNLMSSVLPDGTTTCITVIITTRIAVF 45 | VFDIKDRLLGIANKVI 46 | 47 | >fig|10867.1.peg.9 [Enterobacteria phage Ike] [Phage protein] 48 | MAVYVVTGKLGAGKTLVAVSRIQRTLAKGGIVATNLNLKLHHFPQVGRYA 49 | KQCRVMRIADKPTLEDLESIGRGNLTYDESKNGLLVLDECGTWFNSRNWS 50 | DKSRQPVIDWCLHARKLGWDIIFIIQDISLMDKQARDALAEHVVYCRRLD 51 | KLNIPIIGGLISVLSGGRLPLPKVHFGIVKYGDNPQSLTVDKWVYTGTDL 52 | YAAYDTKQIFTSDREISPPYCPLSPYYTHGIFSVKRDAKYYMRMTKIYFK 53 | KMNRVFLMASFLALGAACGIFYKSQAYSNQLQHIQDNSKTSVISKTDQSA 54 | EILPRLSINSYSQMGYDVSVTFKDAKAKIYNSFDLIKDGYRVDIKDACHV 55 | TIVKKSYIQQITCEG 56 | 57 | >fig|10867.1.peg.10 [Enterobacteria phage Ike] [Phage protein] 58 | MKLQAEKKLIFGYVALCFLMTLGIAFNVLADPVNLNNAPVRSFVQWYSQK 59 | SNKAVVVNPDVKGNITVFNADVNQANIDDFFKSVLNANGFVLMAGDPSGV 60 | STPSKLPSQQTDNDDDYEDSADYVPVGDSVPVSAQPQKPLDLTVRNFKLT 61 | RVRSSDVLPLAKIFVDSNGGGDVIDYPGNNSLLVSGSAAIMNALADFITS 62 | IDVARDQVLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTAL 63 | STAGGSFGIFNGNVLALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQ 64 | NVPFVTGKVTGEAANVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDT 65 | KADSLTSQMTASDIITNQRHMQTTVQIKDGQTLLLGGLIDSNTTDGNRSV 66 | PWFESVPVIGWLFRSHSDSHNERTMFVLLTAHVIKAL 67 | 68 | -------------------------------------------------------------------------------- /old/genomes/10868.1.fas: -------------------------------------------------------------------------------- 1 | >fig|10868.1.peg.1 [Enterobacteria phage If1] [Single stranded DNA binding protein, phage-associated] 2 | MSELGNLETTVTGKIKRFNNGGGYYYTTVVSPAADAYSFPPVIRIKSKKS 3 | LGRVGDEIADIHCRITGYERSFPYTDKQTGEQSRGFNVDMLLELLE 4 | 5 | >fig|10868.1.peg.2 [Enterobacteria phage If1] [Phage capsid and scaffold] 6 | MSATDFDSLYQLIFNAGLVICFGLGVISGGQR 7 | 8 | >fig|10868.1.peg.3 [Enterobacteria phage If1] [Phage capsid and scaffold] 9 | MSALSYFFAAYCIGWVISHSILVFKKLSEVST 10 | 11 | >fig|10868.1.peg.4 [Enterobacteria phage If1] [Phage major capsid protein] 12 | MKKSVVAKIIAGSTLVIGSSAFAADDATSQAKAAFDSLTAQATEMSGYAW 13 | ALVVLVVGATVGIKLFKKFVSRAS 14 | 15 | >fig|10868.1.peg.5 [Enterobacteria phage If1] [attachment protein] 16 | MKKIIIALFFAPFFTHATTDAECLSKPAFDGTLSNVWKEGDSRYANFENC 17 | IYELSGIGIGYDNDTSCNGHWTPVRAADGSGNGGDDNSSGGGSNGDSGNN 18 | STPDTVTPGQTVNLPSDLSTLSIPANVVKSDSIGSQFSLYTNASCTMCSG 19 | YYLSNNADSIAIANITETVKADYNQPDMWFEQTDSDGNHVKILQNSYKAV 20 | SYNVESKQSDVNNPTYINYSYSVNVKQVSYDTSNVCIMNWETFQNKCDAS 21 | RAVLITDTVTPSYSRNITIQSNINYQGSNGSGGSGGSGGSGNDGGGTGNN 22 | GNGTGDFDYVKMANANKDALTESFDLSALQADTGASLDGSVQGTLDSLSG 23 | FSDSIGGLVGNGSAISGEFAGSSAAMNAIGEGDKSPLLDSLSFLKDGLFP 24 | ALPEFKQCTPFVFAPGKEYEFIIECKYIDMFKGIFAFILYFWTFVTVYDS 25 | FSGILRKGRG 26 | 27 | >fig|10868.1.peg.6 [Enterobacteria phage If1] [Phage capsid and scaffold] 28 | MPVFLGLPVLARFIGWLAGALIAYVAKFFTLGIARIALAISLFLGLIIGL 29 | NGLLVSYLSDLTSVLPPEIASAVSYVVPANAAPCLYAIFSLKAAVFIFDV 30 | KDRIIGYLDWNKS 31 | 32 | >fig|10868.1.peg.7 [Enterobacteria phage If1] [Phage maturase] 33 | MAVYVVTGKLGAGKTLVAVGKIQDKIVSGCRVATNLDLRIHKLPRVGIFA 34 | KSPDVIRIPDKPSLDDLLAIGRGNNSYDENKNGLLVLDECGTWFNSRSWA 35 | DKERQSVINWFLHARKLGWDIIFLIQDLSIMDKQARVALAEHVVYCRRLD 36 | KITIPFIGSIYSVITGSKLPLPKVHVGIVKYGDSPQSMTVERWTYTGRDL 37 | YAAYDTKQAFSDAYEHSSFSYLTPYLSHGRYAVKRDATFYMRLTRIYLKK 38 | YSRVLCLFCGFVSAFTYLSLSKPEATPQIKPVTTQIITSRYKPSELRITT 39 | SYRMGNAVGFEFMDAKKQKIASDDLIKDGFRMVYITPCSVELIKDGKHEK 40 | VTC 41 | 42 | >fig|10868.1.peg.8 [Enterobacteria phage If1] [Phage maturase] 43 | MKKLLASLLCVLSFQSFAIPVELNNAPVREFVSWYSKTTGKPVIISPDVK 44 | GEITVYSADVTKDELPQFFTSVLRANGFDLSPGNPAVVQKFNRNTYEYSD 45 | SFSEPVPASSYDGDVPPPTGDFFTKPEIRANLITQTYPVNNVRAKDLAPV 46 | IDIFLKGENIAGTKVYPLMGRIFLLVTASASQHKELAAFFPSVDVPRTQV 47 | LVESVIFETTASDGFDFSFAAGDPSGSPVAGGINTDRLTSVLSSTGGSFG 48 | IFNGNILGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGR 49 | VTGEAANVNNPFQTIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDS 50 | QTASDIITNTRSISTTVQLKSGQTVLLGGMVDNRESDSDSSVPWVSKIPL 51 | IGALFTSKSSNANKRTLYILIRARVVNLL 52 | 53 | >fig|10868.1.peg.9 [Enterobacteria phage If1] [Phage protein] 54 | MWKKMPEYIFLQDAYTDNLQQKLKDLHTAWKRCFDKKLAAKAPVWKRKNE 55 | GRDSIRFVNFEKYCCLENRRVKLPSGLGWVKFRQSQRVNGKIKNATISQL 56 | AGQWYISFQVEIETAEPNHTSTTIVGLDAGVAKLATLSDGTVFEPVNSFQ 57 | KNQKKLARLQRQLSRKVKFSNNWQKQKRKIQCLHSRIANIRRDYLHKVTT 58 | TVSKNHAMIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLNRSILDQGWY 59 | EMRRQLEYKQLWRGGQVLAVPPAYTSQRCACCGHTAKENRLSQSQFRCQV 60 | CGYTANADVNGARNILAAGHAVLACGGTMQSDRPLKQEPDAEQSAVTH 61 | 62 | >fig|10868.1.peg.10 [Enterobacteria phage If1] [Phage protein] 63 | MVVSISIRGSLLKVSGNPSRWGRLDNLFGLPTLDSCVSVFNTILAEIGLP 64 | QFTKCKRLMPGQAKENEKAPLVADGAIIKEVHITSNRAAGKGNEDDYISG 65 | LSTQPYRNSVPRLHSNGKSVDWLSKKGNVNLIYPTVYNKAHEMELHSLTK 66 | IKNRFSEQSREYNYLLDIISFCKENGVVRFEQKLKSRFLQKNALNYWGLS 67 | DYSILNKLHSDFLELDKKLSVNAMDFETISDHLVSSGVVETTRAANTTAM 68 | YAIQWFHGHVFDFNKKQVQTHRARLRKIGIDIAQKCNVSKFSPVIVKQTR 69 | EIKVQECVAPSWYVRPSHLRVA 70 | 71 | -------------------------------------------------------------------------------- /old/genomes/10869.1.fas: -------------------------------------------------------------------------------- 1 | >fig|10869.1.peg.1 [Enterobacteria phage I2-2] [Phage protein] 2 | MKTFFAKFIVALFAFTYFSAFAEPVTLNNSPVRSFVQWYSSKTGKSVIVN 3 | PDVKGNITVFNADVNNANIDDFFKSVLNANGLVVVAGNPAVVSTPLTKLA 4 | SQPSNEETYDDESDGVAYEAVPQSAAPAVPADLTVRNFNVTRVRSSDVLP 5 | LAKIFVDSNGGGNVVDYPGNNSLVVSGSAQVMPALSDFITSIDVAREQVL 6 | IQSLMFETSVSNGVDLSFALALASGGKVAGGFNTSALGTALSTAGGSFGI 7 | FNGNILALSLQAVQSDSNSKVISTPRILTQSGQSGYISVGQNVPFVTGKV 8 | TGEAASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLSNQA 9 | IASDIITNQRQIQTTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIPLI 10 | GWLFRSHSDSKDDRTMFVLLTAHVIRAL 11 | 12 | >fig|10869.1.peg.2 [Enterobacteria phage I2-2] [Phage protein] 13 | MIDWVTAVLPCLHVPVDAGRVLSVAPDGSVEWESVKFSRVTGSFQSSISV 14 | RSQGSDGNGKATHLYVDGNPSKWLQGHNIVGSDDLNGLMIAFYARMLSLL 15 | NIPHHLESYRQVLSGQYELKRVDINYMFELPTLIDVRSWLHAAEFKAKTR 16 | HGRPATAKGTLYFGKNSRRWSIKAYSKYDEVNCGKKAHGVPEEIKKTGLV 17 | EWSKNKLRLELTLRALQLTDINLNFAKNWSTETAYTVFKEYMGRIEMSGN 18 | TLLTDTQVINLPSALRMTYVCWKQGICVTDMVSRATYFRHRKVLKEFGID 19 | IAVTVDRVDNSNVVPLIRVLEAKPASIPSQYDNLIFSSNRVSSF 20 | 21 | >fig|10869.1.peg.3 [Enterobacteria phage I2-2] [Phage protein] 22 | MSGNTLLTDTQVINLPSALRMTYVCWKQGICVTDMVSRATYFRHRKVLKE 23 | FGIDIAVTVDRVDNSNVVPLIRVLEAKPASIPSQYDNLIFSSNRVSSF 24 | 25 | >fig|10869.1.peg.4 [Enterobacteria phage I2-2] [Phage protein] 26 | MHSGILIRGRILGSRTANRDNNSPQHILGVGIQKADGFGGTTQDVEQVKI 27 | PDQLVQSGVVNQINSLIGKLCEVPINVRSWSMNGKNGTSYTLSFESGIQE 28 | IEELIYVR 29 | 30 | >fig|10869.1.peg.5 [Enterobacteria phage I2-2] [Phage protein] 31 | MSDELIHVVIALGLVISFGLGAITAGVLR 32 | 33 | >fig|10869.1.peg.6 [Enterobacteria phage I2-2] [Phage protein] 34 | MIDYVGLFIGAYIMGFALFYGIGFFKSIAERIV 35 | 36 | >fig|10869.1.peg.7 [Enterobacteria phage I2-2] [Phage major capsid protein #Fam0025] 37 | MSVITKVAAAKNKIVVGAGLLMASAGAFAADDGTSTATSYATEAMNSLKT 38 | QATDLIDQTWPVVTSVAVAGLAIRLFKKFSSKAV 39 | 40 | >fig|10869.1.peg.8 [Enterobacteria phage I2-2] [Phage protein] 41 | MKRKIIAISLFLYIPLSNADNWESITKSYYTGFAMSKTVESKDQDGKTVR 42 | KEVITQADLTTACNDAKASAQDVFNQMKLTFSGIWPDSQFRLVTGDTCVY 43 | NGSPSEKTESWSIRAQVEGDMQRSVPDEEPSEQTPEEICEAKPPIDGVFN 44 | NVSKGDEGGFYINYNGCEYEATGVTVCQNDGTVCASSAWKPTGYVPESGE 45 | SSSSPVKDGDTGGTGEGGSDTGGDTGGGDTGGGSTGGDTGGSTGGGSTGG 46 | GSTGGSTGKSLTKEDVTAAIHDASPSIGDAVKDSLTEDNDQNDNQKKADE 47 | QSAKASASVSDAISDGMRGVGNFVDDLGGESSQYGIGNSEMDLSVSLAKG 48 | QLGIDLEGHGSAWESFLNDGALRPSIPSGHGCTDFVMFQGSVYQLDIGCD 49 | KLGDIKSVLSWVMYCLTFWYVFQSATSLLRKGEQ 50 | 51 | >fig|10869.1.peg.9 [Enterobacteria phage I2-2] [Phage protein] 52 | MAVYVVTGKLGAGKTLVAVSRIQRTLAKGGIVATNLNLKLHHFPQVGRYA 53 | KQCRVMRIADKPTLEDLEAIGRGNLSYDESKNGLIVLDECGTWFNSRNWS 54 | DKSRQPVIDWFLHARKLGWDVIFIIQDISLMDKQAREALAEHVVYCRRLD 55 | KLNIPIIGGLISVLSGGRLPLPKVHFGIVKYGDNPQSLTVDKWIYTGTDL 56 | YAAYDTKQIFTSDRELSPPFCPVSPYYTHGIFAVKRDAKYYMRMTKIYFK 57 | KMNRVWLMASFLALGAGVGFFYKSRQINEQLSNMPVASAQANTTKTDHTI 58 | DELPRLSINSFAQMGYDVNVSFKDAKGKIYYSFDLMKSGYALDIKDSCHI 59 | TLRKRNYIQQVTCEG 60 | 61 | -------------------------------------------------------------------------------- /old/genomes/10870.1.fas: -------------------------------------------------------------------------------- 1 | >fig|10870.1.peg.1 [Enterobacteria phage M13] [Phage protein] 2 | MNIYDDSAVLDAIQSKHFTITPSGKTSFAKASRYFGFYRRLVNEGYDSVA 3 | LTMPRNSFWRYVSALVECGIPKSQLMNLSTCNNVVPLVRFINVDFSSQRP 4 | DWYNEPVLKIA 5 | 6 | >fig|10870.1.peg.2 [Enterobacteria phage M13] [gene V helix destabilising protein (DNA synthesis).] 7 | MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEYPVLVKITLD 8 | EGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPAK 9 | 10 | >fig|10870.1.peg.3 [Enterobacteria phage M13] [gene VII protein required for phage assembly.] 11 | MEQVADFDTIYQAMIQISVVLCFALGIIAGGQR 12 | 13 | >fig|10870.1.peg.4 [Enterobacteria phage M13] [gene IX structural protein of virion.] 14 | MSVLVYSFASFVLGWCLRSGITYFTRLMETSS 15 | 16 | >fig|10870.1.peg.5 [Enterobacteria phage M13] [Phage major capsid protein #Fam0025] 17 | MKKSLVLKASVAVATLVPMLSFAAEGDDPAKAAFNSLQASATEYIGYAWA 18 | MVVVIVGATIGIKLFKKFTSKAS 19 | 20 | >fig|10870.1.peg.6 [Enterobacteria phage M13] [gene III structural protein of virion.] 21 | MKKLLFAIPLVVPFYSHSAETVESCLAKPHTENSFTNVWKDDKTLDRYAN 22 | YEGCLWNATGVVVCTGDETQCYGTWVPIGLAIPENEGGGSEGGGSEGGGS 23 | EGGGTKPPEYGDTPIPGYTYINPLDGTYPPGTEQNPANPNPSLEESQPLN 24 | TFMFQNNRFRNRQGALTVYTGTVTQGTDPVKTYYQYTPVSSKAMYDAYWN 25 | GKFRDCAFHSGFNEDPFVCEYQGQSSDLPQPPVNAGGGSGGGSGGGSEGG 26 | GSEGGGSEGGGSEGGGSGGGSGSGDFDYEKMANANKGAMTENADENALQS 27 | DAKGKLDSVATDYGAAIDGFIGDVSGLANGNGATGDFAGSNSQMAQVGDG 28 | DNSPLMNNFRQYLPSLPQSVECRPFVFSAGKPYEFSIDCDKINLFRGVFA 29 | FLLYVATFMYVFSTFANILRNKES 30 | 31 | >fig|10870.1.peg.7 [Enterobacteria phage M13] [gene VI small hydrophobic protein, part of capsid.] 32 | MPVLLGIPLLLRFLGFLLVTLFGYLLTFLKKGFGKIAIAISLFLALIIGL 33 | NSILVGYLSDISAQLPSDFVQGVQLILPSNALPCFYVILSVKAAIFIFDV 34 | KQKIVSYLDWDK 35 | 36 | >fig|10870.1.peg.8 [Enterobacteria phage M13] [gene I protein required for phage assembly.] 37 | MAVYFVTGKLGSGKTLVSVGKIQDKIVAGCKIATNLDLRLQNLPQVGRFA 38 | KTPRVLRIPDKPSISDLLAIGRGNDSYDENKNGLLVLDECGTWFNTRSWN 39 | DKERQPIIDWFLHARKLGWDIIFLVQDLSIVDKQARSALAEHVVYCRRLD 40 | RITLPFVGTLYSLITGSKMPLPKLHVGVVKYGDSQLSPTVERWLYTGKNL 41 | YNAYDTKQAFSSNYDSGVYSYLTPYLSHGRYFKPLNLGQKMKLTKIYLKK 42 | FSRVLCLAIGFASAFTYSYITQPKPEVKKVVSQTYDFDKFTIDSSQRLNL 43 | SYRYVFKDSKGKLINSDDLQKQGYSLTYIDLCTVSIKKGNSNEIVKCN 44 | 45 | >fig|10870.1.peg.9 [Enterobacteria phage M13] [gene IV protein required for phage assembly.] 46 | MKLLNVINFVFLMFVSSSSFAQVIEMNNSPLRDFVTWYSKQSGESVIVSP 47 | DVKGTVTVYSSDVKPENLRNFFISVLRANNFDMVGSIPSIIQKYNPNNQD 48 | YIDELPSSDNQEYDDNSAPSGGFFVPQNDNVTQTFKINNVRAKDLIRVVE 49 | LFVKSNTSKSSNVLSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILI 50 | EGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDRLTSVLSSAGGSFGIFN 51 | GDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTG 52 | ESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQA 53 | SDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGL 54 | LFSSRSDSNEESTLYVLVKATIVRAL 55 | 56 | >fig|10870.1.peg.10 [Enterobacteria phage M13] [gene II (across origin 5'-3') protein required for replication.] 57 | MIDMLVLRLPFIDSLVCSRLSGNDLIAFVDLSKIATLSGMNLSARTVEYH 58 | IDGDLTVSGLSHPFESLPTHYSGIAFKIYEGSKNFYPCVEIKASPAKVLQ 59 | GHNVFGTTDLALCSEALLLNFANSLPCLYDLLDVNATTISRIDATFSARA 60 | PNENIAKQVIDHLRNVSNGQTKSTRSQNWESTVTWNETSRHRTLVAYLKH 61 | VELQHQIQQLSSKPSAKMTSYQKEQLKVLSNPDLLEFASGLVRFEARIKT 62 | RYLKSFGLPLNLFDAIRFASDYNSQGKDLIFDLWSFSFSELFKAFEGDSM 63 | NIYDDSAVLDAIQSKHFTITPSGKTSFAKASRYFGFYRRLVNEGYDSVAL 64 | TMPRNSFWRYVSALVECGIPKSQLMNLSTCNNVVPLVRFINVDFSSQRPD 65 | WYNEPVLKIA 66 | 67 | -------------------------------------------------------------------------------- /old/genomes/10872.1.fas: -------------------------------------------------------------------------------- 1 | >fig|10872.1.peg.1 [Pseudomonas phage Pf3] [Phage capsid and scaffold] 2 | MQSVITDVTGQLTAVQADITTIGGAIIVLAAVVLGIRWIKAQFF 3 | 4 | >fig|10872.1.peg.2 [Pseudomonas phage Pf3] [Phage capsid and scaffold] 5 | MGLHYLFGFCLALFSFSAIAAGPVSTEVAAGTTTYRVTNTTVRTPPNVTL 6 | SPVRDITPYVEKIPNKGLAQAAQGRLIVAQRAASVPVTGFFNVSGAVVKS 7 | GAKSFLRSAGRASGIGLGLAALLEAADWVFDEEGEIVKPLPGGGSPVLMP 8 | RPVILNEYTVTGSAGQWSISKEYEPDPRSVPGWYSYNGNPVWVSAVEDVG 9 | FTWRYWYFADVLMDGQGRPNYLVAYSDSGPNEYWQDVGGYSLDSLPTEPE 10 | FVPLTDAELEAGIDQYYEPDPDDWRNLFPYIEPDSFTIETPIPSLDLSPV 11 | VSSSTNNQTGKVTVTETTTSVDFEVSDNNSSQPSISVNETTTENVYVDGD 12 | LVSSETNTTVTNPPSSGTSTPPSSGSGSDFQLPSFCSWATAVCDWFDWTQ 13 | EPIDEEPDLSGIISDIDDLERTKDISFGSKSCPAPIALDIEFLDMSVDLS 14 | FEWFCELAGIIYFMVMASAYVLAAYITLGVVRG 15 | 16 | >fig|10872.1.peg.3 [Pseudomonas phage Pf3] [Phage protein] 17 | MARLLALVIGYALSSFVLKLFTVLGVGIFTYVGLTALVDGFLNLLQPMLT 18 | GLPSYILDILAIAGVPEALSIVGSALLTRASINSAKAFVGVLT 19 | 20 | >fig|10872.1.peg.4 [Pseudomonas phage Pf3] [Phage protein] 21 | MIRSIIALMLSFALVPFAFASDRLTVKHHEIDIRVAIPLVADFCGRSVVL 22 | GPSIQGVVSLDFDDVPCSQAFDLLLESNHLLSSMVGDVLVITAMDQVLNS 23 | ERKADDLRTFRRDLFNANDIERRVINIVHASASEVVSLFKESFMSLDAPG 24 | MSMTVDERTNSVFAALPSSFFPALESVIQAIDVPVRQVAIEANVVEASVD 25 | WSKRLGLNWGGALSLGNWSAVTAGDLSVAAGSSIGFGFLSNTLSLDGLFT 26 | AMENEGNGRVVSRPTLLTLDRQSASVLRGTELPYQQSAGDGATSVAFKHA 27 | ALSLEVKPVISPDNSIVIEVLVSRDSPNFSNAIDGVPPIDTNRLVTTIRV 28 | PHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLI 29 | FLTPRILGLEVEPEKQSLVFDESFFLGDLF 30 | 31 | >fig|10872.1.peg.5 [Pseudomonas phage Pf3] [Phage protein] 32 | MITLITAVPGSGKTLYAIGLIEAALSEGRPVFTNISGLVKDKFSNPHLLS 33 | DAPDDWRDTPEGSLVVYDEAQQAHLYPSNAQRGPVTDERLTAMETHRHTG 34 | HDLVFITQAPTFVHHHIRKLVGLHIHLYRSRGLQAASKYEWSHVCDSPND 35 | RKEQQRADFVLWKFPKEHFAFYTSAVMHTHKFKMPKKIGVLLVFVVLGLG 36 | AVGFNLYKNSGLASMAEATASVAEATPSPLALNGVKPSSLAAPYQWSAAA 37 | PAVPVSGCVANRSTNRCQCFDASGVVLAIEHAACLSVISSPLPRQLLSTS 38 | K 39 | 40 | >fig|10872.1.peg.6 [Pseudomonas phage Pf3] [Phage protein] 41 | MRCLKSFRHGFTLGTNCYEPGAKRPRGDRSTVGGWSHGSTSRNIAFLRSI 42 | DEAKLTGHALALTLTVRDCPDTSDDWYKVRRAFEMRLRRLGLIRMHWVIE 43 | WQRRGVPHLHCAAFFDDTAPALLPAVIMRSWCDLVSDYNASPLSQYVLPI 44 | TDAIGWFQYVSKHAARGVNHYQRSPENIPPQWQKKTGRMWGKVGEWPVVE 45 | KAEIFMGDATFYQLRRIVKRWRFADARASGSIHRIRSAKKYLQVPETLSR 46 | VLGASEWMPENELLSILYFLKSQGYEFL 47 | 48 | >fig|10872.1.peg.7 [Pseudomonas phage Pf3] [Phage protein] 49 | MIVHNICHPPRPHCQLKLLCLLNAKAVSYFMVGTDDKIEAEVWVFADESV 50 | AVARPGQPVKAYHTIQSVCFH 51 | 52 | >fig|10872.1.peg.8 [Pseudomonas phage Pf3] [Single stranded DNA binding protein, phage-associated] 53 | MNIQITFTDSVRQGTSAKGNPYTFQEGFLHLEDKPFPLQCQFFVESVIPA 54 | GSYQVPYRINVNNGRPELAFDFKAMKRA 55 | 56 | >fig|10872.1.peg.9 [Pseudomonas phage Pf3] [Phage protein] 57 | MSYYVCVQLVNDVCHEWAERSDLLSLPEGSGLQIGGMLLLLSATAWGIQQ 58 | IARLLLNR 59 | 60 | -------------------------------------------------------------------------------- /old/genomes/10876.1.fas: -------------------------------------------------------------------------------- 1 | >fig|10876.1.peg.1 [Acholeplasma phage MV-L1] [Phage protein] 2 | MEYIEITVNKSQHFVNTDQIYNMLWSSAIMQCLISNEYHHNNNEHTSCIN 3 | RINRNYRSNQRHHQGYNDLYDSINIIQGMLENLNASIVYFTKDGKYKLIM 4 | TL 5 | 6 | >fig|10876.1.peg.2 [Acholeplasma phage MV-L1] [Phage protein] 7 | MKKILFSIIAIFTLLITIKGVHAYDTGSNVLTNNAYTVTYTSEPLGILAK 8 | QSKYQYHSMATQSAMIHWLLMVYIAVGYIYDTSTSYSGIGQGYSPQVTQT 9 | DRAIYYQGQLKINTTNIKTSKRVKDIHNQIKQTQPYNYITFTTQKQTTST 10 | KQYQQSKQQYQSY 11 | 12 | >fig|10876.1.peg.3 [Acholeplasma phage MV-L1] [Phage protein] 13 | MKKYAKLIFIFIMIIFIMNYFIENADAFRLIIMEVLQVQSTKSFTIFIQL 14 | YSFKKVINRLCYIFRFLPFVSSLSLIYLILSWRIHHIVGHKMTKSLLDMS 15 | FSTWSLYLGSILLYTQVVWGLSLLIIAIIALYFILKFWWNNSQVTKDFTL 16 | YNIHIYGAKQRGKDLTTQTIYRRFHKEYNKRIKQLKNALKLVFK 17 | 18 | >fig|10876.1.peg.4 [Acholeplasma phage MV-L1] [Phage protein] 19 | MKFQKIHKYEGLDLFLSDVQTALPKQTSFTHWLPVFFGLAGQLYNMLIII 20 | NSQEFERPWVKLRGQQDKYYRAIKTTPFNKSFIQKYVWNEIPILKNYIFI 21 | KIRSYSELQSAQQNVLPFNAIGLINEGSKHLVLTAGQATKEQFEATYGEI 22 | KERTIVINKKHIMYDSRIFHKYFYGITAQGAIELYNKIESLTPPNFIKQN 23 | ARGRKRYLLLRNKCPVGIIKSLVAVCQGLDVIKDGMALKLLENSFCSKKH 24 | KAYDTLKALRITKNLN 25 | 26 | -------------------------------------------------------------------------------- /old/genomes/117575.1.fas: -------------------------------------------------------------------------------- 1 | >fig|117575.1.peg.1 [Chlamydia phage phiCPAR39] [Phage capsid protein #Fam0039] 2 | MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDE 3 | VLPGDTFSLKEAFLARMATPIFPLMDNLRLDTQYFFVPLRLIWSNFQKFC 4 | GEQDNPGDSTDFLTPVLTAPSGGFTEGSIHDYLGLPTKVAGIECVAFWHR 5 | AYNLIWNQYYRDENIQESVDVEMGDTTSNEVNNYKLLKRGKRYDYFTSCL 6 | PWPQKGPAVTIGVGGIVPVQGLGIQWGNSSAPNPITASSWINSVNPTFIN 7 | STTPTPTGTNQILNYGQAYYIKKPGEATTDPTPRAYVDLGSTSPVTINSL 8 | REAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPV 9 | NISPIPQTSSTDSTSPQGNLAAYGTAIGSKRVFTKSFTEHGVILGLASVR 10 | ADLNYQQGLDRMWSRRTRWDFYWPALSHLGEQAVLNKEIYCQGPAVKDAQ 11 | NGNVVVDEQVFGYQERFAEYRYKTSKITGKFRSNATGSLDAWHLAQQFEN 12 | LPTLSPEFIEENPPMDRVVAVDTEPDFLLDGWFSLRCARPMPVYSVPGLI 13 | DHF 14 | 15 | >fig|117575.1.peg.2 [Chlamydia phage phiCPAR39] [Phage capsid and scaffold] 16 | MNPEQLTSTLGSAVSGVAQGLSFLPGIASGVLGYLGAQKQNATAKQIARE 17 | QMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSKGGASSPAGASWSPNNPV 18 | ESAMNSGLAVQRLTYERKKMQAELQNLREQNRLIRNQAIREGYLAERDKY 19 | MRVAGVPVATEMLDRTSGLLSSSAKAFKNLFSRKGR 20 | 21 | >fig|117575.1.peg.3 [Chlamydia phage phiCPAR39] [Phage capsid and scaffold] 22 | MFKSAYSEKKSVKMKFTQKSLTQQHNKDECDINNIVAKLNATGVLEHVER 23 | RSPRYMDCMDPMEYSEALNVVIEAQEQFDSLPAKVRERFGNDPEAMLDFL 24 | SREENYEEAKALGFVYEDGTSGAPQTFFEADPKDDQNVANQEPGLAQK 25 | 26 | >fig|117575.1.peg.4 [Chlamydia phage phiCPAR39] [Phage protein] 27 | MCKKVCKKCPKKGPKNAPKIGAFYERKTPRLKQST 28 | 29 | >fig|117575.1.peg.5 [Chlamydia phage phiCPAR39] [Phage protein] 30 | MDASLMQFLKKVFDFYVAEVCIFFVPFLTSF 31 | 32 | >fig|117575.1.peg.6 [Chlamydia phage phiCPAR39] [Phage protein] 33 | MVCCNFNLIQAFMACVSPFVCFIDSYNQLWFPKGKKSPKPWDKVRELNSF 34 | EQTQPEEYRKRWVVMPCLKCRFCRVRNAKIWSYRCMHEASLYSQNCFLTL 35 | TYEDRYLPENGSLVRNHPRLFLMRLRKEIYPHKIRYFGCGEYGSKLQRPH 36 | YHLLIYNYDFPDKKLLSKKRGNPLFVSEKLMRLWPFGFSTVGSVTRQSAG 37 | YVARYSLKKVNGDISQDHYGQRLPEFLMCSLKPGIGADWYEKYKRDVYPQ 38 | DYLVVQDKGKSFKTRPPRYYDKLHSRFDPEEMEEIKQKRVEKFMALPELT 39 | QDKAEVKQYIFNDRTKRLFRDYEEESY 40 | 41 | >fig|117575.1.peg.7 [Chlamydia phage phiCPAR39] [Phage protein] 42 | MKVFTVFDIKTEIYQQPFFMQATGAAIRAFSDMVNEDPSKNQFAAHPEDY 43 | ILYEIGSYDDSTGTFIPLDVPKALGTGLDFKHKQ 44 | 45 | -------------------------------------------------------------------------------- /old/genomes/12017.1.fas: -------------------------------------------------------------------------------- 1 | >fig|12017.1.peg.1 [Enterobacteria phage fr] [maturation (A) protein] 2 | MRKFIPTERMSKSHVVSVREYADGELEDNSLPLIYRSNWSPGQYTSTGPR 3 | TKEWHYPSSYSRGAIGIKALDQGKYARLGTSWGREFEERAGYGMSIDARS 4 | CYSLFPVSQNLTWIDVPTNVANRATTEVLGKVTQGNFNLGVALAEARSTA 5 | SQLSTQTIALIKAYTAARRGNWRQALRYLALNENRKFNSKSVASRWLELQ 6 | FGWMPLLSDIQGAYEMLTKVHLKAFMPMRAVRQVGQNVSLSGRLTSPAAS 7 | YKSTCNISRRIVIWFYINDARLAWLSSLGILNPLGIVWEKVPFSFLVDWL 8 | LPVGNMLEGLTAPIGCSYQSGTVTDVISGESTITADDIYGWDTVRPATAK 9 | VQISAVHRGVQSVWPTTGVYVKSPFSMVHTLDALALFRQRLWK 10 | 11 | >fig|12017.1.peg.2 [Enterobacteria phage fr] [Phage capsid and scaffold] 12 | MASNFEEFVLVDNGGTGDVKVAPSNFANGVAEWISSNSRSQAYKVTCSVR 13 | QSSANNRKYTVKVEVPKVATQVQGGVELPVAAWRSYMNMELTIPVFATND 14 | DCALIVKALQGTFKTGNPIATAIAANSGIY 15 | 16 | >fig|12017.1.peg.3 [Enterobacteria phage fr] [Phage lysin] 17 | MQQPSQPTRESTKKPVPFQHEEYPCQNQQRSSTLYVLICLAIFLSKFTNQ 18 | LLASLLDLLIRIVTTLQQLLT 19 | 20 | >fig|12017.1.peg.4 [Enterobacteria phage fr] [replicase] 21 | MSKSTKKFNSLCIDLSRDLSLEVYQSIASVATGSSDPHSDDFTAIAYLRD 22 | ELLTKHPNLGDGNDEATRRSLAIAKLLEANDRCGQINRDGFLHDATASWD 23 | PDVLQTSIRSLIGNLLSGYSSQLFRHCTFSNGASMGHKLQDAAPYKKFAE 24 | QATVTPRALKAAVLVKDQCSPWIRHSHVFPESYTFRLVGGNGVFTVPKNN 25 | KIDRAACKEPDMNMYLQKGVGGFIRRRLKTVGIDLNDQTINQRLAQQGSR 26 | DGSLATIDLSSASDSISDRLVWSFLPPELYSYLDMIRSHYGYVNGKMIRW 27 | ELFSTMGNGFTFELESMIFWAIVRATQIHFRNTGTIGIYGDDIICPTEIA 28 | PRVLEALSFYGFKPNLRKTFTSGSFRESCGAHYFRGVDVKPFYIKKPITD 29 | LFSLMLILNRIRGWGVVNGIADPRLYEVWEKLSRLVPRYLFGGTDLQADY 30 | YVVSPPILKGIYSKMNGRREYAEARTTGFKLARIARWRKHFSDKHDSGRY 31 | IAWFHTGGEITDSMKSAGVRVMRTSEWLQPVPVFPQECGPASSPQ 32 | 33 | -------------------------------------------------------------------------------- /old/genomes/12021.1.fas: -------------------------------------------------------------------------------- 1 | >fig|12021.1.peg.1 [Enterobacteria phage KU1] [Phage maturase] 2 | MFPKQNIDRIYHVKLVSYDNKGKVTSDDSFESVENYLLQNRSTTYKPGYI 3 | RKDFRKPTNFWNGYRYFHQPVGTFTRKLSDGGRQEADYGIVNPNKFTANS 4 | QHLGENMVIYPGPFSINIDNRASVEVLNKLSQSNLNIGVAIAEAKMTASL 5 | LSRQSIALIRAYTAAKRGKWREVLSQLLIAEHRFTRPSKDLGGRWLELQY 6 | GWLPLMSDIKAGYDLLTQTHLPAFMPLRVSRTVGATHNYKVRNVESAGDT 7 | WSYSDRLSVNYRIWYFISDPRLAWASSLGLLNPLEIYWEKTPWSFVVDWF 8 | LPVGNLIEAMSNPLGLDIISGTKTWQLESKMNASLKADGWVGTAKLSAYA 9 | NNGDRSTFYSFPTPLPYVKSPLSGLHMANALALINQRLKR 10 | 11 | >fig|12021.1.peg.2 [Enterobacteria phage KU1] [Phage capsid and scaffold] 12 | MATLRSFVLVDNGGTGNVTVVPVSNANGVAEWLSNNSRSQAYRVTASYRA 13 | SGADKRKYTIKLEVPKIVTQSVNGVELPVSAWKAFASIDLTIPIFAATDD 14 | VTLISKSLAGLFKIGNPVADAISSQSGFYA 15 | 16 | >fig|12021.1.peg.3 [Enterobacteria phage KU1] [Phage lysin] 17 | MGQKAFKHKENLCSDSQRSKRLYVWIALAIVLSDFTSIFSHWIWGLLILI 18 | LRTLMDLPTFVMNV 19 | 20 | >fig|12021.1.peg.4 [Enterobacteria phage KU1] [RNA replicase beta chain] 21 | MFRFTEIEKTLCMDRTRDCAVRFHVYLQSLDLGSSDPHSPDFDGLAYLRD 22 | ECLTKHPSLGDSNSDALRKELAYAKLMDSDQRCKIQNSNGYDLSHIDAGV 23 | LNGILLTAKALIAKLLIGFESHFLNDCSFSNGASQGFKLRDAAPFKKIAG 24 | QATVTAPAYDLAVLAVKTCGPWLRYMQETYGDETRWFRRVYGNGLFSVPK 25 | NNKIDRAACKEPDMNMYLQKGAGSFIRRRLRSVNIDLNDQTRNQELARLG 26 | SIDGSLATIDLSSASDSVSDRLVWDLLPPHVYSYLHRIRSSFTMIDGRLH 27 | KWNLFSTMGNGFTFELESMIFWALSNTVMSYLGVTGLLGIYGDDIIVPTK 28 | CAPLLLQVLSAVNFLPNQKKTFTTGYFRESCGAHFFKGASVKPFYCKRPM 29 | ETLPDVLLLCNRIRGWGTIGGISDPRLFPIWKEFADMIPPKFKGGCNLDR 30 | DTYLVSPDKPGVTLVRDATVRSGFNYKFRRRQENGRYIHWLHMGSGEVSE 31 | TISSARFRCKPNSEWRIQIPLFPQEVEACVLS 32 | 33 | -------------------------------------------------------------------------------- /old/genomes/12023.1.fas: -------------------------------------------------------------------------------- 1 | >fig|12023.1.peg.1 [Pseudomonas phage PP7] [Phage maturase] 2 | MLEEHYYSRKTCGSGGGLSVQRTGYPQTDPPVFKAVNSFERAPLIVGDHV 3 | HSLPYWSRKITLECTPYPFTLRWEGGVHKDGIPDKVPHPSCDPGSELVSY 4 | THSREVDCERFIGPVPSSFTDPKVTSAQWKFLEDMADMKALADLNKSLVN 5 | LPMLYKERRETLKMVGNRLGGLVRVAHAAQDRDLKRYFKARRKDRRKVAE 6 | EVANGHLELIFGWLPLIGELEGAIEYAELPDLDFIRCHGLHTLVLQSTPW 7 | DNSVDVRSYPNWERAAGTRITGSVRTRGVVESRASVRTALRFNLETSLAG 8 | DARRLGFEPISTTYDMIPLSFVVGWFSNFDKYVRTLAPLIGVTFETGSQN 9 | RRTTCELVGCTRFYPRTVSPPSGWFARWKDFPDGSLSEVSGLRRTDIRSV 10 | LSTLPDPDVRFHADVGLFEISAGISLLAQRYLKPLQRLLKRKSFFYGRT 11 | 12 | >fig|12023.1.peg.2 [Pseudomonas phage PP7] [Phage capsid and scaffold] 13 | MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGA 14 | KTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASR 15 | KSLYDLTKSLVATSQVEDLVVNLVPLGR 16 | 17 | >fig|12023.1.peg.3 [Pseudomonas phage PP7] [Phage lysin] 18 | MSSTLCRWAVKALRCTRVYKEFIWKPLVALSYVTLYLLSSVFLSQLSYPI 19 | GSWAV 20 | 21 | >fig|12023.1.peg.4 [Pseudomonas phage PP7] [replicase] 22 | METLSSAQLRDVVSSELGLPVPTQLPHRELGGVEKSPEQFAKEYFLYNLL 23 | RKVEPFSRKEEVPDSVXRASLIAFANAEHNCRVMNQCGRYYSVVNEELEL 24 | LFSEASRLAKILISRWLSDFWPDWEEARFTGGASRLSSRKFSLPALKLAG 25 | FSERGQLSITAPALPYYRLYREGITASDRGYTIVDDSRFDFVAKTAKAVR 26 | FIAMEPELNMLLQKSVGDTIRAALRKAGIDLNTQRLNQDLAYHGSVFRNL 27 | GTIDLSSASDTLSIELVRQYLPKRFLRYVLDLRTPYTSVGGKKHRLEKVA 28 | SMGNGFIFELQSLIYAAFAHAMTLVVGGRECDIAIYGDDIIVSECVVEPL 29 | MQFLEWHGFCPNLDKSYWGGDPFRESCGKHYFAGRDVTPVYVKGALDNLP 30 | ALFRLFNSLKRWEEQTGIRIPDTIALVLSYIPKRDRVLVPKTYSITAGLH 31 | FPAKGCVFPRTIYVRRYQRLIRKGRYMTEEQVDISKRLDDEVRYVDWLRN 32 | PPEALLPLEVWRRFSHRARHHGLPRERKRYRCVSSLEASSVWSSYEDWGE 33 | MA 34 | 35 | -------------------------------------------------------------------------------- /old/genomes/12024.2.fas: -------------------------------------------------------------------------------- 1 | >fig|12024.2.peg.1 [unclassified Leviviridae Pseudomonas phage PRR1] [Phage maturase] 2 | MTKRKYRLRRSGILRQTFSAENKSDWTTSTGQRMTQTNISSADVGVEYAT 3 | IYRGKGRWVWVQHPEGFLFPWRMPSSYTRGHQVIDLTSSTSTITWASPFS 4 | KGSGTRTGVPFENLLNRGNWESFMESRLDMRPLLTYNEMARNNVAIRLKV 5 | GDAKVNLSVFAAEMKRAVTGLASNFITVVGLYRAVRKGDFKRVASLIKPD 6 | PRQKGFSSRDVAGRWLELNYAIIPLLNDIRGGYEYISENFEKLMTYSVSS 7 | NLKTPVPLHYVEDSSSVSMQASGFRGVRTKVHYVIDLPGLREASRVGLIN 8 | PLLVGWELVPYSFVIDWLLPVGNMLEAFTATHGTKFISGTRTRWCDIDLN 9 | GTVRSQYEGYVDWPNSGLSEQPFTGKIYSISRDVLYDYPMVLPYVKNPFS 10 | TTHLINAVALIRNLFKR 11 | 12 | >fig|12024.2.peg.2 [unclassified Leviviridae Pseudomonas phage PRR1] [Phage capsid and scaffold] 13 | MAQLQNLVLKDREATPNDHTFVPRDIRDNVGEVVESTGVPIGESRFTISL 14 | RKTSNGRYKSTLKLVVPVVQSQTVNGIVTPVVVRTSYVTIDFDYDARSTT 15 | KERNNFVGMIADALKADKMLVHDTIVNLQGVY 16 | 17 | >fig|12024.2.peg.3 [unclassified Leviviridae Pseudomonas phage PRR1] [hypothetical protein] 18 | MCKVSTKVDSKLTESVGQLTIRSYLWLRNILALAGLLFVILLATNHLSIA 19 | IYSP 20 | 21 | >fig|12024.2.peg.4 [unclassified Leviviridae Pseudomonas phage PRR1] [replicase] 22 | MATEYPSISRTSFRNPSCDQSFIHRYLQSVSPATKPGDPNFSREGYLTAS 23 | FLSKFANPSKESAAERRSRAIGKLLETEKRNLRTIERLDKPTNFGGISSD 24 | SLLYTASRFIADLLGPFSYDVFALGGFSNGASTSRRRVSGDAISKFDGKG 25 | DVTLRALPYISALINLTPSWKRSVTEQCFRMGRDPLRVVEGNVVFTVPKS 26 | DDIDRAAAKEPDLNMFLQKAVGNHIRRRLRGKGIDLNDQSRNQELARLGS 27 | IDGSLATLDLSSASDSVTWKLVLELLPPDWANVMFDLRSPRGLINGEWHE 28 | WATMSTMGNGFTFELESLIFWALARSAAYYFGCPGVISVYGDDIIVPTKL 29 | AKPLINLLGYCGFIVNPDKSFWTGRFRESCGAHWHAGIDVKPFYCKEPLI 30 | GVQRLIWFLNQLRYWSGPTGICDPRYEDLYFKVRDMIPKSLRHKLRGGRD 31 | YGSNTELVTPDTDGYYLHCKMKKVIRSANPSLSEWLCNVTRNRSPESVPS 32 | LGLTVTEKMQLLDDYSLRPIRKERYHWEPAGDVRVFLREL 33 | 34 | -------------------------------------------------------------------------------- /old/genomes/127507.1.fas: -------------------------------------------------------------------------------- 1 | >fig|127507.1.peg.1 [Bacteriophage VfO3K6] [Phage integrase] 2 | MAKSVFVLGMDITWNSARGDSAQLNVSRPLREINSEKFKRRTIGESGDVN 3 | PQWDQPLMIDHEYALLLERTGALVPRREYQLRLEINPEDPLAGAIVTELI 4 | PVDQEIKKHFEASMKPVQG 5 | 6 | >fig|127507.1.peg.2 [Bacteriophage VfO3K6] [Phage protein] 7 | MSVCVTVVNQYGNLKATKTPVADCQEYVLISAVDYQEYKEPVLFNGDLFL 8 | YVSGVLLINMVVGHWVGRVVRLMSKR 9 | 10 | >fig|127507.1.peg.3 [Bacteriophage VfO3K6] [Phage protein] 11 | MKKLELVVTNVKHAVVNKKTAAGAALMAASVSPAFAEVDITGAINSAVSG 12 | GQANVSLVVAGLIGMAALGFGVTMVVGFLRR 13 | 14 | >fig|127507.1.peg.4 [Bacteriophage VfO3K6] [Phage protein] 15 | MNKSLFLLLFSCLFLSLNASAAQPTYKVSDVSAYPDCKLLLGLRVNPASY 16 | VSCYENKFVNYKDFSTKSCYLRHGKYVVDIMCHTTSPSWPLYRAAGFLQN 17 | SAQCPPDYEKVEDEYVVSCEPIVPACEYGENPDGSCMDACQFKQSIGDTV 18 | KLYWHPAIYGELVTGACYGDYGATRCEVTKNESTIICTGVPDGQYTPDSQ 19 | CSLRFAYTGRQCDGGTLFWGVNGPDEPIIPPDTPEDPTHDPDDPTDEIED 20 | PTVLPDDSTNTVNPGVVDDKPDVEDPDTDESTDTAVLSAIKGLNVDVNKG 21 | IHDLNVDINQSHADITNAVIDVKGSLVDNTQAIQEQQINDNKIYNNTKAL 22 | IQQANGDITTAVNNNTNATIGIRDDLKGLGDSVGELDSSLNAIEGLLTGS 23 | EFGTPTGTAITGEIFTAEDFANLQTTIDEKAESIQGYVDDIKGLITIGTN 24 | FNNGTLSDKSFNIKGATVESGLQRFDAVSGYVRPVVLFICALIALWVLFG 25 | NRSK 26 | 27 | >fig|127507.1.peg.5 [Bacteriophage VfO3K6] [Phage protein] 28 | MEYIYSALEFIANIGQTFLDFFDVAIEWIKNAFEYGAMWLISVWLDIKIA 29 | SIQIALKIAQLLLEEYGVYTLVEDRFNALPSDVRYILTEYGVTSGLRVIF 30 | DAFATSLVMRFFNW 31 | 32 | >fig|127507.1.peg.6 [Bacteriophage VfO3K6] [Zona occludens toxin] 33 | MATSFRYGHGGSYKSACAVWFDLLPALREGRICITNIHGMQPLEVIEQRL 34 | GEKFPDTARLIRISSRNPEGFELWKYFFCWAPIGAFILIDECQQIFSVNA 35 | GFKMANIHKRPFTDFEPHLPEGFSELFHSRWLTIDTSSLDNGEIDDCQRT 36 | RFDEQGRIIYPENFNNAFMEHRHYNWDIVLLTPDFAQIPKELKGVAELAK 37 | QHKGKDGIFFSNRKPRILEHDPTRTVTKPSKDDVVYNLKVPLDVHLLYAS 38 | TVTGQITKSGLGKNIFLNPKFLAAMALVVLSFGYLVYALIGMVSDSETTT 39 | AEGTQLHQTSQQSGVSTSQGQARPGQSGSPGSVMGSSGSGCTGSGCGNES 40 | YHDVGTVPAWFPLANSESIYVSAVERWHKATSIHVNVHFEVVTPRGVTYL 41 | DDGFLNKLGVKMEYLDDCLVQLSHGASNFYVTCSPYEQYAQRQEQDIELK 42 | PVGGLFSGDET 43 | 44 | >fig|127507.1.peg.7 [Bacteriophage VfO3K6] [Phage protein] 45 | MKGLDMKYVFRGKSYTTLTSCYRDNTDQVTVGIGTVRTRLKNGWSLNKAL 46 | LHPKQKTIKTKLGSHTVEGKVYENLPSIAEEYGMTLNTIYKRYSRGCRGD 47 | DLVPLKKRKSYVAPDDEANFRFYANGVGYKSAADACRKLNVKYGTYRLHM 48 | SNGFTVEQALGIEKVQDGRKVRGTKFNVDGKEYTINELSILHNVPEATIR 49 | DRLSRGATIIQSIGLDEIPKGTLKKQRDVAKNKRKPIRLTVNGKLYTSYK 50 | ALADAYGLPQYTVRQRIVVYGYSPEDAVTLDGKSKPLTVEGVDFSSKAAA 51 | AEAYGLTPAVLLARLAGGSTIEQALGIEDKETSRTITYEGEMYNSLKDLA 52 | DKKGISVGTLRSRVQSGLSLEEAIKAGNRIINSGRYNLTILQRDNALANK 53 | PAWLYFVRIHIENKERFKVGITTQTVDKRLKQEAYEFQTIKVVDGTLLDC 54 | FLLEQEIIDLLFDKRDLEVTSDMLDGYSEIFILNESDIEIVNEILDI 55 | 56 | >fig|127507.1.peg.8 [Bacteriophage VfO3K6] [Phage protein] 57 | MKYHEMTKNYIFREFECGLTVEEAAKLCLKNVRTVKEWDKGKSIPPECKR 58 | LMRMNKGRELSSCEEWENFVMRHDRLELPTGQLVTAQQVLIGVALLELGA 59 | SNDIKVAHQILKYARALKRFI 60 | 61 | >fig|127507.1.peg.9 [Bacteriophage VfO3K6] [Phage protein] 62 | MYTNKLLDAYKDKMNYVQYKQIAHDLGVSPQMITEVRKGRTFLNENQILM 63 | LADAVGEDKEKALIGLAMDKAKTHEAQTLWQNIGKKFNGLGLSSISMACA 64 | GLALVIASPQEPLYQCALWALMLNAIAYAYPIKCLSFEGQFNEVSRND 65 | 66 | >fig|127507.1.peg.10 [Bacteriophage VfO3K6] [Rolling circle replication protein, phage related] 67 | MSWCPSPTRPLNNVSTWGCLMTTATNILKSFDEQSVHIDYLCFTFAVKDL 68 | RHCHDAVRRLHKHEEYKGFAKSGLLQRHCRAPKFPAPPVFNPTVAQTSDE 69 | IDAYNKAFDICYRNYLEDCLRIFTNQVLGLSLSAPRGLGFQFYTESMKLT 70 | SPDGEDFCGFVGIGGNNDTVHFQINGTGCKHVFARRPTWSLHDWLTNVLG 71 | VQTLARVDLAYDDYDGIFDCEYAYKAWRDDCFRTAERGRGPVLHEDMTIA 72 | SIGKDGKPIYTKEQYSIGSRTSRIYWRIYNKALEQKLANTGLVWYRSEVE 73 | LKKWNVDVLLNPAGAYAALNDFAASISTAKKFNTKPVPTKRAALDLLASA 74 | HWMRRQYGKILNSLIEFHEGDIETVVGSLVRDGTKFTFPDTYGKLVTHIL 75 | ET 76 | 77 | -------------------------------------------------------------------------------- /old/genomes/127508.1.fas: -------------------------------------------------------------------------------- 1 | >fig|127508.1.peg.1 [Bacteriophage VfO4K68] [Phage integrase] 2 | MAKSVFVLGMDITWNSARGDSAQLNVSRPLREINSEKFKRRTIGESGDVN 3 | PQWDQPLMIDHEYALLLERTGALVPRREYQLRLEINPEDPLAGAIVTELI 4 | PVDQEIKKHFEASMKPVQG 5 | 6 | >fig|127508.1.peg.2 [Bacteriophage VfO4K68] [Phage protein] 7 | MSVCVTVVNQYGNLKATKTPVADCQEYVLISAVDYQEYKEPVLFNGDLFL 8 | YVSGVLLINMVVGHWVGRVVRLMSKR 9 | 10 | >fig|127508.1.peg.3 [Bacteriophage VfO4K68] [Phage protein] 11 | MKKLELVVTNVKHAVVNKKTAAGAALMAASVSPAFAEVDITGAINSAVSG 12 | GQANVSLVVAGLIGMAALGFGVTMVVGFLRR 13 | 14 | >fig|127508.1.peg.4 [Bacteriophage VfO4K68] [Phage protein] 15 | MNKSLFLLLFSCLFLSLNASAAQPTYKVSDVSAYPDCKLLLGLRVNPASY 16 | VSCYENKFVNYKDFSTKSCYLRHGKYVVDIMCHTTSPSWPLYRAAGFLQN 17 | SAQCPPDYEKVEDEYVVSCEPIVPACEYGENPDGSCMDACQFKQSIGDTV 18 | KLYWHPAIYGELVTGACYGDYGATRCEVTKNESTIICTGVPDGQYTPDSQ 19 | CSLRFAYTGRQCDGGTLFWGVNGPDEPIIPPDTPEDPTHDPDDPTDEIED 20 | PTVLPDDSTNTVNPGVVDDKPDVEDPDTDESTDTAVLSAIKGLNVDVNKG 21 | IHDLNVDINQSHADITNAVIDVKGSLVDNTQAIQEQQINDNKIYNNTKAL 22 | IQQANGDITTAVNNNTNATIGIRDDLKGLGDSVGELDSSLNAIEGLLTGS 23 | EFGTPTGTAITGEIFTAEDFANLQTTIDEKAESIQGYVDDIKGLITIGTN 24 | FNNGTLSDKSFNIKGATVESGLQRFDAVSGYVRPVVLFICALIALWVLFG 25 | NRSK 26 | 27 | >fig|127508.1.peg.5 [Bacteriophage VfO4K68] [Phage protein] 28 | MEYIYSALEFIANIGQTFLDFFDVAIEWIKNAFEYGAMWLISVWLDIKIA 29 | SIQIALKIAQLLLEEYGVYTLVEDRFNALPSDVRYILTEYGVTSGLRVIF 30 | DAFATSLVMRFFNW 31 | 32 | >fig|127508.1.peg.6 [Bacteriophage VfO4K68] [Zona occludens toxin] 33 | MATSFRYGHGGSYKSACAVWFDLLPALREGRICITNIHGMQPLEVIEQRL 34 | GEKFPDTARLIRISSRNPEGFELWKYFFCWAPIGAFILIDECQQIFSVNA 35 | GFKMANIHKRPFTDFEPHLPEGFSELFHSRWLTIDTSSLDNGEIDDCQRT 36 | RFDEQGRIIYPENFNNAFMEHRHYNWDIVLLTPDFAQIPKELKGVAELAK 37 | QHKGKDGIFFSNRKPRILEHDPTRTVTKPSKDDVVYNLKVPLDVHLLYAS 38 | TVTGQITKSGLGKNIFLNPKFLAAMALVVLSFGYLVYALIGMVSDSETTT 39 | AEGTQLHQTSQQSGVSTSQGQARPGQSGSPGSVMGSSGSGCTGSGCGNES 40 | YHDVGTVPAWFPLANSESIYVSAVERWHKATSIHVNVHFEVVTPRGVTYL 41 | DDGFLNKLGVKMEYLDDCLVQLSHGASNFYVTCSPYEQYAQRQEQDIELK 42 | PVGGLFSGDET 43 | 44 | >fig|127508.1.peg.7 [Bacteriophage VfO4K68] [Phage protein] 45 | MKGLDMKYVFRGKSYTTLTSCYRDNTDQVTVGIGTVRTRLKNGWSLNKAL 46 | LHPKQKTIKTKLGSHTVEGKVYENLPSIAEEYGMTLNTIYKRYSRGCRGD 47 | DLVPLKKRKSYVAPDDEANFRFYANGVGYKSAADACRKLNVKYGTYRLHM 48 | SNGFTVEQALGIEKVQDGRKVRGTKFNVDGKEYTINELSILHKVVRNWSR 49 | RFHERSSNHLLRLAT 50 | 51 | >fig|127508.1.peg.8 [Bacteriophage VfO4K68] [Rolling circle replication protein, phage related] 52 | MSWCPSPTRPLNNVSTWGCLMTTATNILKSFDEQSVHIDYLCFTFAVKDL 53 | RHCHDAVRRLHKHEEYKGFAKSGLLQRHCRAPKFPAPPVFNPTVAQTSDE 54 | IDAYNKAFDICYRNYLEDCLRIFTNQVLGLSLSAPRGLGFQFYTESMKLT 55 | SPDGEDFCGFVGIGGNNDTVHFQINGTGCKHVFARRPTWSLHDWLTNVLG 56 | VQTLARVDLAYDDYDGIFDCEYAYKAWRDDCFRTAERGRGPVLHEDMTIA 57 | SIGKDGKPIYTKEQYSIGSRTSRIYWRIYNKALEQKLANTGLVWYRSEVE 58 | LKKWNVDVLLNPAGAYAALNDFAASISTAKKFNTKPVPTKRAALDLLASA 59 | HWMRRQYGKILNSLIEFHEGDIETVVGSLVRDGTKFTFPDTYGKLVTHIL 60 | ET 61 | 62 | -------------------------------------------------------------------------------- /old/genomes/127509.3.fas: -------------------------------------------------------------------------------- 1 | >fig|127509.3.peg.1 [Bacteriophage Vf33] [rolling circle replication protein, phage related] 2 | MSWCPSPTRPLNNVSIWGCSMTTATNILKSFDEQSVHIDYLCFTFAVKDL 3 | RHCHDAVRRLHKHEEYKGFAKSGLLQRHCRAPKFPAPPVFNPTVAQTSDE 4 | IDAYNKAFDICYRNYLEDCLRIFTNQVLGLSLSAPRGLGFQFYTESMKLT 5 | SPDGEDFCGFVGIGGNNDTVHFQINGTGCKHVFARRPTWSLHDWLTNVLG 6 | VQTLARVDLAYDDYDGIFDCEYAYKAWRDDCFRTAERGRGPVLHEDMTIA 7 | SIGKDGKPIYTKEQYSIGSRTSRIYWRIYNKALEQKLANTGLVWYRSEVE 8 | LKKWNVDVLLNPAGAYAALNDFAASISTAKKFNTKPVPTKRAALDLLASA 9 | HWMRRQYGKILNSLIEFHEGDIETVVGSLVRDGTKFTFPDTYGKLVTHIL 10 | ET 11 | 12 | >fig|127509.3.peg.2 [Bacteriophage Vf33] [Phage integrase] 13 | MAKSVFVLGMDITWNSARGDSAQLNVSRPLREINSEKFKRRTIGESGDVN 14 | PQWDQPLMIDHQYALLLERTGALVPRREYQLRLEINPEDPLAGAIVTELI 15 | PVDDDIKKHFEASLKAK 16 | 17 | >fig|127509.3.peg.3 [Bacteriophage Vf33] [Single stranded DNA-binding protein, phage-associated] 18 | MPVCALPNADGFLAVVPDIEAASCSGYVMVTAQEYDTLMSYTQLTPGEIS 19 | QAFGLGFTLVFVGGYLSTYAIKMAIRLIKLL 20 | 21 | >fig|127509.3.peg.4 [Bacteriophage Vf33] [putative major capsid protein, phage related] 22 | MKRLNALKKFGKQAAATVTVAVLSVPAMAAEGGAADPFSAIDLSGVATKI 23 | GAAGLVIVGITMAYKSITLAKRAVNKA 24 | 25 | >fig|127509.3.peg.5 [Bacteriophage Vf33] [putative adsorption protein, phage related] 26 | MNHYLRFFIALVILCASSHTYALEARIGYMQMRGCGSQGDWVDPYKVNTC 27 | FLDTGYFDSCTFEKTPYSDARYPYQTVCDNGLGLAYYEVRCPENSEFDPS 28 | TLRCKSVCEYGKNPDGTCMDACQFKKSIDETKLLQWVAYVYGEQVTGACY 29 | GDFGATRCELGRVPSDTTLCTDVESGQWTQNTLCHGNFQFTGNQCEGGTL 30 | FWGKDGPDTPIIPDDPIHDPDDPTGDIEDPSVLPDGSTNTVNPPDTEKKP 31 | DVEDPDTDDSTDMAVLNAIKGLNSDVNKALNDMNIDINQASADVQNQIIA 32 | LNASMVTNTQAIQKQQINDNKIYENTKALIQQANADITTAVNKNTNAING 33 | VGDDVEKIAGAMDGIAEDVSGISDTLDGIANTDTSGAGTGGTCIESQTCT 34 | GFYESAYPDGLGGLVSGQLDSLKHNTIDNFVSSFGDLDLSSAKRPSFVLP 35 | VPFFGDFSFEEQISFDWVFGFIRAVLIMTSVFAARRIIFGG 36 | 37 | >fig|127509.3.peg.6 [Bacteriophage Vf33] [VSK receptor, phage related] 38 | MEWLVDLFNKLLVFLYQLLISLVNMLKDLFFWAVEQIMAMVNLLLSGVFS 39 | LFAPVDMSQYMTSIPPTVAWVMAAVGVPQCLSIILAAITVRLMLQLIPFT 40 | RLGS 41 | 42 | >fig|127509.3.peg.7 [Bacteriophage Vf33] [Zona occludens toxin] 43 | MIYAIAGRPGGGKTYEAVAYHIIPAIKDGRKVITNITLNIDWFVKVFGED 44 | VRELIKIVDGRLTDFGSTTRPFSQIEDYSDEWRNEKGQGPLYVVDEAHMS 45 | LPSRGLAAPILEWYSIHRHYGVDIILLTQNIRKVHRDIKDMIEVTYRCTK 46 | NTAMGSTSSYTKKVQDGCAGEVVNTSTRFYKSEYFPFYKSHSQSNKQVQE 47 | AEAKDIRPFWKRWPVVGTGVLLSLGLVFNIWAWWPESEQPPDPVKPPQPV 48 | QAQLPDGTPTVDTAETKAKKKKKASGFGPLEDYDFYITGYAKQIAYAKRL 49 | KYAAELDRDLTFYKIYIDVYDGRDKLFSFDHLDLVKIGYQFEVLSDCVYR 50 | VTWEETERIFTCGQREKPSDILQQNMPVHI 51 | 52 | -------------------------------------------------------------------------------- /old/genomes/127511.3.fas: -------------------------------------------------------------------------------- 1 | >fig|127511.3.peg.1 [Bacteriophage Vf12] [rolling circle replication protein, phage related] 2 | MSWCPSPTRPLNNVSIWGCSMTTATNILKSFDEQSVHIDYLCFTFAVKDL 3 | RHCHDAVRRLHKHEEYKGFAKSGLLQRHCRAPKFPAPPVFNPTVAQTSDE 4 | IDAYNKAFDICYRNYLEDCLRIFTNQVLGLSLSAPRGLGFQFYTESMKLT 5 | SPDGEDFCGFVGIGGNNDTVHFQINGTGCKHVFARRPTWSLHDWLTNVLG 6 | VQTLARVDLAYDDYDGIFDCEYAYKAWRDDCFRTAERGRGPVLHEDMTIA 7 | SIGKDGKPIYTKEQYSIGSRTSRIYWRIYNKALEQKLANTGLVWYRSEVE 8 | LKKWNVDVLLNPAGAYAALNDFAASISTAKKFNTKPVPTKRAALDLLASA 9 | HWMRRQYGKILNSLIEFHEGDIETVVGSLVRDGTKFTFPDTYGKLVTHIL 10 | ET 11 | 12 | >fig|127511.3.peg.2 [Bacteriophage Vf12] [Phage integrase] 13 | MAKSVFVLGMDITWNSARGDSAQLNVSRPLREINSEKFKRRTIGESGDVN 14 | PQWDQPLMIDHQYALLLERTGALVPRREYQLRLEINPEDPLAGAIVTELI 15 | PVDDDIKKHFEASLKAK 16 | 17 | >fig|127511.3.peg.3 [Bacteriophage Vf12] [Single stranded DNA-binding protein, phage-associated] 18 | MPVCALPNADGFLAVVPDIEAASCSGYVMVTAQEYDTLMSYTQLTPGEIS 19 | QAFGLGFTLVFVGGYLSTYAIKMAIRLIKLL 20 | 21 | >fig|127511.3.peg.4 [Bacteriophage Vf12] [putative major capsid protein, phage related] 22 | MKRLNALKKFGKQAAATVTVAVLSVPAMAAEGGAADPFSAIDLSGVATKI 23 | GAAGLVIVGITMAYKSITLAKRAVNKA 24 | 25 | >fig|127511.3.peg.5 [Bacteriophage Vf12] [putative adsorption protein, phage related] 26 | MNHYLRFFIALVILCASSHTYALEARIGYMQMRGCGSQGDWVDPYKVNTC 27 | FLDTGYFDSCTFEKTPYSDARYPYQTVCDNGLGLAYYEVRCPENSEFDPS 28 | TLRCKSVCEYGKNPDGTCMDACQFKKSIDETKLLQWVAYVYGEQVTGACY 29 | GDFGATRCELGRVPSDTTLCTDVESGQWTQNTLCHGNFQFTGNQCEGGTL 30 | FWGKDGPDTPIIPDDPIHDPDDPTGDIEDPSVLPDGSTNTVNPPDTEKKP 31 | DVEDPDTDDSTDMAVLNAIKGLNSDVNKALNDMNIDINQASADVQNQIIA 32 | LNASMVTNTQAIQKQQINDNKIYENTKALIQQANADITTAVNKNTNAING 33 | VGDDVEKIAGAMDGIAEDVSGISDTLDGIANTDTSGAGTGGTCIESQTCT 34 | GFYESAYPDGLGGLVSGQLDSLKHNTIDNFVSSFGDLDLSSAKRPSFVLP 35 | VPFFGDFSFEEQISFDWVFGFIRAVLIMTSVFAARRIIFGG 36 | 37 | >fig|127511.3.peg.6 [Bacteriophage Vf12] [VSK receptor, phage related] 38 | MEWLVDLFNKLLVFLYQLLISLVNMLKDLFFWAVEQIMAMVNLLLSGVFS 39 | LFAPVDMSQYMTSIPPTVAWVMAAVGVPQCLSIILAAITVRLMLQLIPFT 40 | RLGS 41 | 42 | >fig|127511.3.peg.7 [Bacteriophage Vf12] [Zona occludens toxin] 43 | MIYAIAGRPGGGKTYEAVAYHIIPAIKDGRKVITNITLNIDWFVKVFGED 44 | VRELIKIVDGRLTDFGSTTRPFSQIEDYSDEWRNEKGQGPLYVVDEAHMS 45 | LPSRGLAAPILEWYSIHRHYGVDIILLTQNIRKVHRDIKDMIEVTYRCTK 46 | NTAMGSTSSYTKKVQDGCAGEVVNTSTRFYKSEYFPFYKSHSQSNKQVQE 47 | AEAKDIRPFWKRWPVVGTGVLLSLGLVFNIWAWWPESEQPPDPVKPPQPV 48 | QAQLPDGTPTVDTAETKAKKKKKASGFGPLEDYDFYITGYAKQIAYAKRL 49 | KYAAELDRDLTFYKIYIDVYDGRDKLFSFDHLDLVKIGYQFEVLSDCVYR 50 | VTWEETERIFTCGQREKPSDILQQNMPVHI 51 | 52 | -------------------------------------------------------------------------------- /old/genomes/145579.1.fas: -------------------------------------------------------------------------------- 1 | >fig|145579.1.peg.1 [Phage phiMH2K] [Phage capsid protein #Fam0039] 2 | MKLGSRHNQHSFAQIPSVHTTRSKFNRSFGTKDTFKFDDLTPIFIDEILP 3 | GDTINMNTKTFIRLATQVVPVMDRMMLDFYFFFVPCRLVWDNWEKFNGAQ 4 | DNPSDSTDYLIPTITAPAGGFENMSIYDHFGIPTQVANLEINALPFRAYN 5 | LIYNDWFRDQNLIGKIAVPKGDGPDNHADYQLLKAAKPHDYFTSALPWPQ 6 | KGMAVEMPIGNSAPITYVPNAGNGPYPHFNWVQTPGGPGNNGALSQVTFG 7 | GQKAISAAGNDPIGYDPQGTLIADLSSATAATINQLRQAMMMQSLLELDA 8 | RGGTRYVEILKSHFNVISLDFRLQRPEYLSGGTIDLQQNPVPQTSSSTTD 9 | SPQGNLAAFSTASEFGNKIGFSKSFVEHGYVLGFIRARGQVTYQQGLHKM 10 | WSRQTRWDFFWPKFQELGEQAILNKEIYAQGNATDSEIFGYQERYGEYRF 11 | RPSEIKGQFRSNFAESLDVWHLAEYFTVKPSLNKTFIESNTPIERSLVVT 12 | RPDYPDLIGDFWFDYTHVRPMVTYGVPATFGRF 13 | 14 | >fig|145579.1.peg.2 [Phage phiMH2K] [Phage protein] 15 | MGQLGKIQRSTRQPIGLNGLFDPNNHSTRWWLRKHVHLRSLRNSDTSCKS 16 | RDKCSTFQSLQSYL 17 | 18 | >fig|145579.1.peg.3 [Phage phiMH2K] [Phage protein] 19 | MLYLSELTILSITTGSETKILSEKSPFLKETDQTTTRTINYSKPQNRTTT 20 | SQAHYLGHKKAWL 21 | 22 | >fig|145579.1.peg.4 [Phage phiMH2K] [Phage protein] 23 | MLKFLNLTSTSLVLTSAYNVQNIYLAELLISNRIQFHKRLHQQRTAHKVT 24 | SPPSQRPQNSETKSDSQNRS 25 | 26 | >fig|145579.1.peg.5 [Phage phiMH2K] [Phage capsid and scaffold] 27 | MALPALVAAAAPAVIGGIASYFGQQETNAANAKLAVWQTRENQAEAARNR 28 | KWQEQMSNSAHQREANDLQTAGLNRLLTATGGASTPSGGQGQAAGATMEN 29 | SLKAGITTAFEAKQLGMQIERQEKELQNLAAQTRKLNIDAKVAEKRIPES 30 | DLKTKFTTNFSPVIDRVINLEDSNGPRLSNLREEKKPNQMPLKNGKLNT 31 | 32 | >fig|145579.1.peg.6 [Phage phiMH2K] [Phage protein] 33 | MARTNVKLCPPKRSKRPSNSRSKSTSHSNRRSLNSLRRTRTSRRSNNGKF 34 | T 35 | 36 | >fig|145579.1.peg.7 [Phage phiMH2K] [Phage capsid and scaffold] 37 | MKKIELRPNGTKLVHTVNELPPETDQSFGKECDINFIVKKFIKTGQITHL 38 | ARRQGFYGDQSSIPDFQTAMDTVTKAQQAFDELPAHMRKRFANSPHELMQ 39 | FLQDPKNRDEAISLGLMEMVETPQQAPQSTTNQTTTKPAPASGEPTPVPT 40 | P 41 | 42 | >fig|145579.1.peg.8 [Phage phiMH2K] [Phage protein] 43 | MQLKVFSIRDSKTGVYGTPFYQHTHGQAERSFQQLAKDPQSTVANHPEDF 44 | DLFHLGEYDDQTGKLTPLDTPEHCVKAIDLIKQQ 45 | 46 | >fig|145579.1.peg.9 [Phage phiMH2K] [Phage DNA binding protein] 47 | MKRKPMSRKASQKTFKKNTGVQRMNHLNPRAMRGGIRL 48 | 49 | >fig|145579.1.peg.10 [Phage phiMH2K] [DNA replication protein, phage-associated] 50 | MHCIRPIKAGFNATGDIVYSSKKISKELASFAFPCRKCIPCRLNMAREKA 51 | IRAYHESQMWDDNIFLTLTYDDEHLKSDRLQWIDFDLFIKRLNEKLNRGL 52 | SKENRRPLPYMVTGEYGDKTKRPHWHVLIFNFRPDDAKKHYVTELGEQVY 53 | TSEFIRDLWTHGNIEFGSVTLDSASYVARYAAKKLAHGNDQDHDYHPIHN 54 | TSKKHAIGKKWIEKYHEQTFSRGYVVLPNGSQGPIPRYYQDWYKKNHPEK 55 | WMEYDAKVKLKSKELAEMQSRKDQLDDFANFINYRGGTNYPLSRTQVKLA 56 | ILKSKFKQLQEKLKL 57 | 58 | >fig|145579.1.peg.11 [Phage phiMH2K] [Phage protein] 59 | METKPNALTGTSLSSTSGQTTQKSITLQNSENKYIPQNSSETFGLMAILN 60 | LALLLWTLLATLRVTLQKNWPTETTKTTTITQFTTLQKNTPSAKNGLKNT 61 | TNKHSHEDM 62 | 63 | -------------------------------------------------------------------------------- /old/genomes/154784.1.fas: -------------------------------------------------------------------------------- 1 | >fig|154784.1.peg.1 [Bacteriophage AP205] [Phage lysin] 2 | MKKRTKALLPYAVFIILSFQLTLLTALFMYYHYTF 3 | 4 | >fig|154784.1.peg.2 [Bacteriophage AP205] [Phage maturase] 5 | MNMYKWVPESIRDSGEGQPSYSNNGDYAPSGPWVAAGIHTMPQSLRDSMR 6 | NSIMVTAQARRDVIGPEWGPDGRFTGYASVIGTPDPKPADIVNKFTVERR 7 | PVSNGNFQQRVKAGDIVVAPYTSDGKITVKLVAGQKDISSTPDYDYRIDS 8 | SLASSAGFVVAGERWYYTKRHFIIPRYFQNWRMRRRKYVTGWVMPTFYSP 9 | KEIFNRLKDSLVPDTGLVTQVWADNNTKRMDFLTAMAEIPQTLSSFLDAL 10 | GYLGSLIKDFKRRRFFLNKAHQRIRNKLGVSFAERRSQIVSKYDRKIASA 11 | RKPAIIVKLRQRKEKALKALDKMRVREEKKMIREFATQAASLWLSFRYEI 12 | MPLYYQSQDVLDVIANSTSEFMTSRDFVAKAINIGIPLEWNLDQENLVSQ 13 | PRHNVMVKSKLSPENNIGKTLSVNPFTTAWELLTLSFVVDWFVNFGDVIA 14 | GFTGGYSDDSGATASWRFDDKKVFHLKNIPSAMVIVDINFYTRQVIDPRL 15 | CGGLAFSPKLNLFRYLDAMSLSWNRSRLKISRAT 16 | 17 | >fig|154784.1.peg.3 [Bacteriophage AP205] [Phage capsid and scaffold] 18 | MANKPMQPITSTANKIVWSDPTRLSTTFSASLLRQRVKVGIAELNNVSGQ 19 | YVSVYKRPAPKPEGCADACVIMPNENQSIRTVISGSAENLATLKAEWETH 20 | KRNVDTLFASGNAGLGFLDPTAAIVSSDTTA 21 | 22 | >fig|154784.1.peg.4 [Bacteriophage AP205] [RNA-dependent RNA polymerase] 23 | MLNACDQLKSTSIPAFQSNVLSDVLSLSDAADITVKHRIVSKFGEPAGSS 24 | LRDVAFNNYKLFEQHLGSIPQITNLWQEGKEFFFLRKAKANLGKWLKTFK 25 | LDYNSITVEFTPGESYTSATGHVSVFAKLSNLAHWTCTADVVDDVCHLVY 26 | YNRGLKAAARKHIGLMVPIEGESGFDTFSRHLMGVISIVPGARGASVPKN 27 | QETDRFIDVEPTFNMILQRWVAGEITRCLTLAKNHLGASRNINGKVVFHD 28 | AQELHKEMIRDLSYATIDFSNASDSVLLWVVQLLFPKHVSYVLTQYRSST 29 | VQLGSDLIEPNKLSSMGNGFTFEVMTLLLLSIGRIFDPTCRVYGDDVIIK 30 | AEVADDFINTVSSIAFMTNNKKTFLKGLFRESCGAFQFDTFDIQSFEFEW 31 | ADNFTDVIAICNKLKLIIDAAQCNEAVIAILRNAHTVICECIPVLCKGPQ 32 | PPDFNLFLSQYVYDDNWKKKQMKSDLAITKLNRLVDKQWGFFSATHHHPE 33 | ELCYVNIPVYVPRRDSVHAGQNLFVDLSNLYALRFTKSTVRGKGKWVNVP 34 | HWVTPVGSIYRASRIRQQYPNIGELPTCYWSPHQLDLITS 35 | 36 | -------------------------------------------------------------------------------- /old/genomes/180503.1.fas: -------------------------------------------------------------------------------- 1 | >fig|180503.1.peg.1 [Bacteriophage VSKK] [Phage protein] 2 | MKADLINKRPKRYSTMFLNLVFSKKLPQAIRRTGQRASVGQVSRREWQPR 3 | RD 4 | 5 | >fig|180503.1.peg.2 [Bacteriophage VSKK] [rolling circle replication protein, phage related] 6 | MPCKHPHHDTVRPVKVDHLAFTFAYADLRHLDKSNDQDFINLQMPVYHEP 7 | KTRTKEQGAVCSTLEQIEHHMEAHRNKVSKMLFHRFDLFMSKIMGFRLSP 8 | MRGRGLHGYNDSMVILDMTGQVECGLVGIGGNNDTVFVQINGTGCTKLFD 9 | RIDSKKLHWWLAQVLGITRLVRLDLAVDDYTGNFDAKYAEKCFYEGAFRT 10 | APRGQGPSMVPHKRITENGALMEEATIVGSRSSAIYWRIYNKKLEQKITD 11 | PDLIWYRNEVELKKCDIELLANPAASFAGICPFAASIECTPPVKFSRNKK 12 | AQGLEFMARIAWVRRQCGVALAEVIAMTQGDLGEAFGMLIPHKHRRPDFE 13 | LLGVPDSYAQLKNTLWS 14 | 15 | >fig|180503.1.peg.3 [Bacteriophage VSKK] [Phage integrase] 16 | MANITGIVIKTFPKSGTTIAELNVLRPVETVNVEKFAQYGLGLNTDIPFN 17 | KQPLRIEPTYAKRLIETRAFVPNREYDIRFGSNPDDPLEVVAVELIPKDD 18 | DLKKYLLKH 19 | 20 | >fig|180503.1.peg.4 [Bacteriophage VSKK] [putative major capsid protein, phage related] 21 | MQVWPLVLVLWLYLLSVICPPMPSMSAKNSLTFYRSSTMQEIFAAIDFAG 22 | IAALVTAAGVAIIGINMAFKGITLGKRAVNKA 23 | 24 | >fig|180503.1.peg.5 [Bacteriophage VSKK] [putative adsorption protein, phage related] 25 | MNEDMNELLTRLNSDNNKQLDDVNNQLLQLNTQSQRIVAQIAKQEKQDAA 26 | IYENTKALIQNLNKDVTTAVNKTTNAVNALGSKVDGLSDAVDGLGEDVSA 27 | IKDAITNVDTSGAGISGTCIESDTCTGFYESGYPDGISGIFSQHFETVSE 28 | SVHDTVKDFMKIDLSHAQRPSFSIPVLHFGKFQL 29 | 30 | >fig|180503.1.peg.6 [Bacteriophage VSKK] [Zona occludens toxin] 31 | MFGYDYVSNHCSYLITTCSIYSFRFLTMIYAIVGRPRSGKSYESVVYHII 32 | PAIQSGRKVITNIPLNIPMFEKVFGESAKYLIKVIDAQFTEYGSMNRPFS 33 | KVEHYLDDWRDGKNRAPLYVIDEAHMVIPTRLGDPKILEFYSMHGHYGID 34 | IIILTQNLRKIHADIRAMIEMTYYCAKNTAFGSKKTYTKKVRIGDTREDI 35 | NIEQRTYKEHYFGFYQSHTQSSGAVDEAQAFDITPIWKRWPFWGSLICFI 36 | IVILILGYYFQSRKSKTIDAQPLPSEQVEQVPLSVPPQSPSSKPQQTIKT 37 | VPVSEPLKDFNLYVSGHAKQIAYKKMSFSREIDTKLTFYHVYISAYQDDQ 38 | FSFSLNNIDLEKMGYQFEALTECVYRITWGSNSCVITCIDESRFNQQKAE 39 | TVFDHVPKLGI 40 | 41 | -------------------------------------------------------------------------------- /old/genomes/181604.1.fas: -------------------------------------------------------------------------------- 1 | >fig|181604.1.peg.1 [Vibrio phage VSK] [Transcriptional regulator] 2 | MLIKLPLLGVLSMNRSEMTKNFVFREFECGLSVEEAAKLCFKTESEVKQW 3 | HAGEKIPPICKRLMRGTQKRAETGDVGI 4 | 5 | >fig|181604.1.peg.2 [Vibrio phage VSK] [Transcriptional regulator] 6 | MQKTVRTLQKAKTRSKTSKLHTTRTCRPQKISKMRTGVRGYISDEEAIFL 7 | AESAGIDPEIALLGCHADRNENPRTKAIWESIAKKQNGLGLRTISMLCGD 8 | LAVSISQFNEAVSYFAVCRLMVKVAINNAYKTSAFGSFINESKRNDKEFC 9 | FS 10 | 11 | >fig|181604.1.peg.3 [Vibrio phage VSK] [DNA primase; involved in replication, phage related] 12 | MANSARNKPLSQSVNPFVTIQLTSGALPRFLAYGGFNSDGSQRFSVTSVS 13 | TDAHKMPLPTANAILPKIKRNWPLAQISYQVK 14 | 15 | >fig|181604.1.peg.4 [Vibrio phage VSK] [Phage protein] 16 | MGISSTTTTNPTSGSTCISFGGIVSLKTGLSLSNTLPFTMALTHINWLKS 17 | LTKTTTNCC 18 | 19 | >fig|181604.1.peg.5 [Vibrio phage VSK] [rolling circle replication protein, phage related] 20 | MPCNHPHHDTVRPVKVDHLAFTFAYADLRHLDKSNDQDFINLQMPVYHEP 21 | KTRTKEQGAVCSTLEQIEHHMEAHRNKVSKMLFHRFDLFMSKIMGFRLSP 22 | MRGRGLHGYNDSMVISIMTGQVECGLVGIGGNNDTAFCPNQRHGVHPNTF 23 | RPYRTLRSFIGARSGLGITRLVRLDLAVDDYTGNFDAKYAEKCFYEGAFR 24 | TAPRGQGPSMVPHKRITGPGALMEEATIVGSRSSAIYWRIYNKKLEQKIT 25 | DPDLIWYRNEVELKKCDIELLANPAASFAGICPFRPSIECTPPVKFSRNK 26 | KAQGLEFMARIAWVRRQCGVALAEVIAMTQGDLGEAFGMLIPHKHRRPDF 27 | ELLGVPDSYAQLKNTLWS 28 | 29 | >fig|181604.1.peg.6 [Vibrio phage VSK] [Phage integrase] 30 | MAKSLVSSSKHSPSRGTTIAELNVLRPVETVNVEKFAQYGLGLNTDIPFN 31 | KQPLRIEPTYAKRLIETRAFVPNREYDIRFGSNPDDPLEVVAVELIPKDD 32 | DLKKYFT 33 | 34 | >fig|181604.1.peg.7 [Vibrio phage VSK] [Single stranded DNA-binding protein, phage-associated] 35 | MPVCALPNSQGFLAVTDKPLNECDGGYVAVTIQDYDYLMSYTRITPTDAG 36 | LAFSFGFMAVFALGYLSTKALYVGKKLINL 37 | 38 | >fig|181604.1.peg.8 [Vibrio phage VSK] [Phage capsid and scaffold] 39 | MPLCKKFSLQSTLLVSLLSLLLLVLPSLASTWLSKASLSANALSTKPNR 40 | 41 | >fig|181604.1.peg.9 [Vibrio phage VSK] [putative adsorption protein, phage related] 42 | MSGFIAALNSDNKGANAPFFMVMFMRKLFIISLVISLYFTALPEFAAYQL 43 | PFDQTKTFPTVQAAAEYYANLLGGTSCKADGNRFKIYRVKSISDPSFVIF 44 | QQETYLDNKCQVFSSKGDISVTLIVVDDPTTPCEASKGQTGKVGWNSYFW 45 | GSATPSRDICSSALMGGCVALTGDHLCVNIDPEHKIDPSLYECEALYIVQ 46 | DTPWSPSE 47 | 48 | >fig|181604.1.peg.10 [Vibrio phage VSK] [putative adsorption protein, phage related] 49 | MRIALLFFLSRILTLNPEPEPEPEPQPDPRTQSSDPTAPLPGSGGEVINP 50 | TVPPKPPTEETPKPDVETPDPTPDSNSDVVQSVTGMNEDMNELLTRLNSD 51 | NNKQLDDVNNQLLQLNTQSQRIVAQIAKQEKQDAAIYENTKALIQNLNKD 52 | VTTAVNKTTNAVNALGSKVDGLSDAVDGLGEDVSAIKDAITNVGYFWGLV 53 | FLALVIESDTCTGFYESGYPDGIQAYFHIILKPSLKVLLIPSKTLMKIDL 54 | SHAQRPSFSIPVLHFGNFSFDDYINLDWIFGFVRVCMMVSTAFLCRKIIF 55 | GG 56 | 57 | >fig|181604.1.peg.11 [Vibrio phage VSK] [VSK receptor, phage related] 58 | MDWVIDLFNKLIEFLYRLLITLIDMLKDVFLWLIDGVLSAVNLLLEKALS 59 | LIEPMDVSSYLTGIPSGAAWVISAIGIPQCLGMIMSAIIVRILLQLVPFT 60 | RLGS 61 | 62 | >fig|181604.1.peg.12 [Vibrio phage VSK] [Zona occludens toxin] 63 | MIYAIVGRPRSGKSYESVVYHIIPAIQSGRKVITNIPLRIPMFEKVFGES 64 | AKYLIKVIDAQFTEYGSMNRPFSKVEHYLDDWRDRARIEPLLYVIDEAHM 65 | VIPTRLGDPKRLEFYSMHGHYGIDIIILTQNLRKIHADIRATMIR 66 | 67 | >fig|181604.1.peg.13 [Vibrio phage VSK] [Zona occludens toxin] 68 | MIESDYIYCAKNTAFGSKKTLYKKVRIGDTREDINIEQRTYKGTLFRFLS 69 | ISHTQSSGAVDEAQAFDITPIWKRWPFWGSLICFIIVILILGYYFQSRKS 70 | KTIDAQPLPSEQVEQVPLSVPPQSPSSKPQQTIKTVPVSEPLKDFNLYVS 71 | GHAKQIAYKKMSFSREIDTKLTFYHVYISAYQDDPIFSFSLNNIDLEKMG 72 | YQFEALTECVYRITWGSNSRVITCIDESRFNQQKAETVFDHVS 73 | 74 | >fig|181604.1.peg.14 [Vibrio phage VSK] [Phage protein] 75 | MKADLINKRPKRYSTMFPKLVFSKKLPQAIRRTGQRASPVGQVSRREWQP 76 | RRDGHNVSSNTL 77 | 78 | -------------------------------------------------------------------------------- /old/genomes/185959.1.fas: -------------------------------------------------------------------------------- 1 | >fig|185959.1.peg.1 [Spiroplasma phage 1-C74] [Phage protein] 2 | MVKMINLLVVENNNSNWDKIFSFVFDIFLFIFDVIWNTKLPMTNTSIAYF 3 | LVFFMVIKLSIYAIHGTSTQYNNLGSTVNNGVSQVYSSTVRKGINVGKNV 4 | YQNSNKQQVKKELKRQSIRYQAKNIRSTKFKGDKK 5 | 6 | >fig|185959.1.peg.2 [Spiroplasma phage 1-C74] [Phage protein] 7 | MIKLVLLVAAIAIFGTGFITVIINQFTSAKNIIMDLYNSDTWLIWLFGRM 8 | AVLFSHPLMLTISSLYIVGFIVSKTLYS 9 | 10 | >fig|185959.1.peg.3 [Spiroplasma phage 1-C74] [Phage protein] 11 | MKIKILKFLKRKKWWEILVYILVVGFGFALFIGSIYDKWDKLIKWERYFI 12 | LIYVSCKFVFLIWISLMYFIYN 13 | 14 | >fig|185959.1.peg.4 [Spiroplasma phage 1-C74] [Phage capsid protein #Fam0081] 15 | MRKSLSLFSIFILIFLGLVIPFITLTAFRPLNEEQYTLKQESSTGKGINE 16 | TDFINTMFLRSSFFENWSETNYFINPTLKTSKNLLFNDKWYLDFLQDSYS 17 | TGVVYDKPNEVFLNYYQQWHSLKNRYMVEKFYDVKKENFLNDLIDFIYAF 18 | AVKYKMFNVSKEIVKNVDRYKENHYPRVKLNQDNWKLIDDIENVDKYKWE 19 | DETYIGITKIWKNKEWNWIIEDWKLHPPFSNVYLSSYKAIYRWTGVGKPQ 20 | LPTIDKNTGEITDWNSYQQTRVKEFIDLSLYSVLLENTRVQQGGSADYEN 21 | PNKVGTKRIIFDFETVDELDVKNIKKAIYRMILTVDEANLIISGSLELNN 22 | INNDDLSFNFSFMRTGMGEVFNFNGSIYSSLNSKDLKYYQQFSGQFDLSK 23 | FLQSFFASALVPVFQNRSSFIENGYIDNLQYDTVLVNFFALKLQNFNNIL 24 | LSENINDKLQFDKLLNSMFKISQKFYTNYLRTIFDLENNTYVQGYNKKYG 25 | LLVNNGFKIYPRYFYFSDKYKQLDIKLYSAFKNRFYTINNYGSVFNYDFS 26 | VANNYNISLNSGYVFGGDLQNKYGLQYKKIEEQKIGYNVFELQAQKENDM 27 | YRYYDFNFGIYNWQEINNGGLFPDKQWWQVQYITPKGWWDFGAHIKNAVI 28 | WIVNTIPGVKQVNELASGVGKVFETVYSFFSQIFEVWKFNPALYSTITNI 29 | FLLIIFMKFVRLI 30 | 31 | >fig|185959.1.peg.5 [Spiroplasma phage 1-C74] [putative transposase] 32 | MKYIINNFNLFDLQAKLKNFLSKNYKNKYYKRIKQKIFSYINLCNDYYNG 33 | NFLLKDLIKKYFKNKFSTFYYWANKILIAYKSNDFAELLLKSTIPNNINY 34 | QYSNDVRQNICDLYFKYCNKHAGGVLSLFYNLKKGIHGEELKNKAPKNLK 35 | TFFRWLKKDERWLKIKNKIKEIKKQHSRYEVKEIGLLQMDAKYFVPSKFS 36 | VDKKYYVYDFIDEKTRLALGYVYDKLSTDNAIDAVKKAISDFKNIFGIII 37 | TRIRTDNGSEFINNYRNNQKISVKKTNFTQFLTDKNILHQTTPVRSPQSN 38 | GKIERFHQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQT 39 | PFNFLNSLSLIK 40 | 41 | >fig|185959.1.peg.6 [Spiroplasma phage 1-C74] [Phage protein] 42 | MQTKQYFILRSLVKKYGKDNVINTVNKIAKDIEIKK 43 | 44 | >fig|185959.1.peg.7 [Spiroplasma phage 1-C74] [Phage protein] 45 | MPTWLTTIFSVVIILGIFAWIGLSIYQKIKQIRGKKKDKKEIERKESNK 46 | 47 | >fig|185959.1.peg.8 [Spiroplasma phage 1-C74] [Phage protein] 48 | MLGMYLTTAFNFLTAPTPKTMTEGMTGIWTGLTSALWKVKEGITNIFPEI 49 | MVFLGEAWIILIPFAIFCIIKILNFFRVMVKGF 50 | 51 | >fig|185959.1.peg.9 [Spiroplasma phage 1-C74] [Phage protein] 52 | MIKLSNFVKKNQNVENYFISKEFIPFTTDKASFINLPNHNRHIGFWLSNK 53 | FIYSSEKHSEQVAIGLIYDNSYPIVKYDENLKRNIWKYLTGTELINLYNQ 54 | YKQNYFTKMKKALFLSEPKKVKANNNNNNLTNWSVEKEEQLINDLESLN 55 | 56 | >fig|185959.1.peg.10 [Spiroplasma phage 1-C74] [Phage protein] 57 | MSLYDYWVQFVSYIIGANAPEFLYVISFVLFIVLFFGMFFKLIQKMWSF 58 | 59 | >fig|185959.1.peg.11 [Spiroplasma phage 1-C74] [Phage protein] 60 | MIIEFNLLVILLVQMPLSFYMLYRLCYLLFCFLECFLNLFKKCGVFKNAK 61 | WLTRIQRVFYLYLFVYR 62 | 63 | >fig|185959.1.peg.12 [Spiroplasma phage 1-C74] [Phage protein] 64 | MQNDWQEFKEFFIYIFLFIDKANVESIIMWNLTQNEYLTLMVGVWVVILF 65 | LTWFFLWMVFKIVGYFK 66 | 67 | >fig|185959.1.peg.13 [Spiroplasma phage 1-C74] [Phage protein] 68 | MKKFIFFFKNYCYISGSMLLFSLIDLLLWIISLYCVGLVFWILFALQCVY 69 | FVWWLWKNIFYQLNAFRLVNFVWDNPLSVIIGKLGTGKTLLLTYLSQTMK 70 | LLTDEIYSNYPLEDDKVKVLTFKNLDFTDRTKPVPPDDSVILFDESYLYI 71 | DGTSPHDEKKVHSGKIPWIVLARHFRHRALFTAQREGMIWNNIRQLASGI 72 | IIPISLKKPVAKKGFNFFNRFFIMRMGIFQDITDYEIWKTKSVERTAEGK 73 | RAKHKSDVGLGIRFFKIIIPLEFANKYDSEWLKFVRDLKNDEIVNEKFYY 74 | WSEITKLSVKERLELFDIDILKKNLKPRKEKGNGKDD 75 | 76 | -------------------------------------------------------------------------------- /old/genomes/189836.1.fas: -------------------------------------------------------------------------------- 1 | >fig|189836.1.peg.1 [Propionibacterium phage phiB5] [Phage protein] 2 | MIILCGTVADTSVRHVEPANGAPFDVQLVHILMGRWVDAVALAKDFQGDA 3 | PGLGEVVALEVIATPFARRKGGAGIQYTALRRVSSLPTASRAVAAA 4 | 5 | >fig|189836.1.peg.2 [Propionibacterium phage phiB5] [Phage protein] 6 | MPGVVPVPVVGSAGVEPWCARVGSSWTGLVGGTAVCAPPRSRRLLAWCCP 7 | CCRRWWRCHPRHHRRRRRGCLCRVVRPGCSGWSGAWGGQASAWRWLWVVA 8 | STRIGWLTDACQLAAVAWSFVFPWYFAVPGGQFVSDSGAYGYCHGVPVLA 9 | LVAVAGACGVIGAGRRVAGVLVPGAGLCGSVPRDDRGAGPGMSVVVTASV 10 | VCGALWVLVSSVVTMDRGL 11 | 12 | >fig|189836.1.peg.3 [Propionibacterium phage phiB5] [Phage capsid and scaffold] 13 | MTVASAVVIVGVVLTFRIASILWRVGRGLAWT 14 | 15 | >fig|189836.1.peg.4 [Propionibacterium phage phiB5] [Phage capsid and scaffold] 16 | MDVATACLVLIAFLVGGVLIGFLDSVF 17 | 18 | >fig|189836.1.peg.5 [Propionibacterium phage phiB5] [Phage capsid and scaffold] 19 | MLPMVILEAPSDVGGTVSAAITALGPQITPIIGVAIGVSLIPFAAKWIFR 20 | KAKSLVS 21 | 22 | >fig|189836.1.peg.6 [Propionibacterium phage phiB5] [Phage capsid and scaffold] 23 | MFGVKRSWLRRWVRAVAAFAVGALVVVGVGVASFAPRASAAIGTERVNGV 24 | GGCSPGMVFATNNTPILWGGPASSDFDGMILAQSRTWNLGWSVSDQMALC 25 | NFAMGAAILRQLRGMSSGSSGMTDTEMRSWLEPILGAVRAIQGETKPTDM 26 | SGVINGLSDVANKTQGLADGTAAGLRGLQSSVSAIAGRSGDGPGTLAAVN 27 | GLQGMVANSCKQNPTQQDQWTWLGLPWTPSAPVGGTDCAGVGSLLKDLGR 28 | KLGEALHGQGNDQRTGVDKISDLIGQARDAVKGAASGISGAVDQAVQAVK 29 | DAGQGILSGLQGLGDRIVQGVQGASQAVQDEIRRAAGGLIEAIKNSRGGD 30 | GGKGGDGGQGGQGGQGGRGGDGGSVIIGGGDVPGDLQGAAPGAWQAMPRL 31 | QRWVDAMGSVRHALTISGGAECGGGPTINLPGAVSWRPLSWCGGEVGWGS 32 | VRTILAAMVIIAAFWLGVRMLLASISLDVPGGGDR 33 | 34 | >fig|189836.1.peg.7 [Propionibacterium phage phiB5] [Phage capsid and scaffold] 35 | MFAWLFKMLAKAWTGLLARVDGLVPDVPDGVSSGIGGLAGAAHFIAPIWG 36 | WLPGGALLIALTILVVCLAASVSIRIIRIIASFLTLGGGA 37 | 38 | >fig|189836.1.peg.8 [Propionibacterium phage phiB5] [Phage protein] 39 | MSWQSKRDLRRRFGIVGYVGSNGSGKSLMAVLDTMPTLEAGRQVLSTVRL 40 | LDWENPRPCDDPGCDLPGHPDHLAAHPLWVPLRELSQMLDFEGGDILLDE 41 | VTGVASSRESMSLPPQIANMLVQLRRRDVVLRWTTPAWSRADLIIRETTQ 42 | AVVLCRGAMSKTLPGRVWPSHRLIMSRVVSAADATALSAGGQTAGRVSSL 43 | ARSVIRLEQCPAIQAYDTLDRVLSVPVAEGGRCVVCGGRRSVPGCSCGDD 44 | GDSCGTGRGAGPLGVARDPSRAGRPVTALRAVESTSSDLAVRLGKKSEAE 45 | GMNPPASA 46 | 47 | >fig|189836.1.peg.9 [Propionibacterium phage phiB5] [Replication protein, phage-associated] 48 | MWYQHMSQTSTIIHADGSNRRRRVRWSARRTLWTGSGLQRVRNCGRVPRS 49 | LSSGVAIMVRRDSSTGNVIDAGYSGLQHCNSVWACPVCAAQIASQRQMLV 50 | SEVLSRWHARGGRAMMITLTVRHDRTQSLKIVWDAVAKGWSKATNGRSWD 51 | VLGSLFGVDGRLPWLRFVEVTHGKSGWHVHVHALVLLGEGARGREADAVE 52 | QIRARMWGSWNRAVVRQGLKSGLESLSEAHLIEPDAGDGLGGLAAYFSKA 53 | AFELTLGGATKAAQGDNCTPFEILRLLTGDLNGEVGLRLSGKERTRLWRV 54 | WHEWEEFSSGRRQMGVSKGLFDMLGLDSSWTPSDDEIIEDNDLDGDELFV 55 | IGHEEWTALRDRGLALDVLEAVAGDLEKQEAERVLVAALGLQPARAVIDR 56 | LARGA 57 | 58 | >fig|189836.1.peg.10 [Propionibacterium phage phiB5] [Phage protein] 59 | MQALCREHFQLLPCRDRGQVAVRAAPAGSVDCCEYLKTEPGRPGRGLRSP 60 | DATRWGVTSTPAGVRGRPAARRVSLRRLEASYPGSFTRGAGVWLNLCQRW 61 | S 62 | 63 | -------------------------------------------------------------------------------- /old/genomes/223524.1.fas: -------------------------------------------------------------------------------- 1 | >fig|223524.1.peg.1 [Vibrio cholerae phage VGJphi] [rolling circle replication protein, phage related] 2 | MIRFALSKLTTWLLLSPMRTCATWTKATTKTLSIYRCPFITSQRPEPRNK 3 | ARCALPWNKSSIIWKRTETKCPRCSFIALICSCPKSWLSLSPMRGRGLHG 4 | YNDSMVILDMTGQVECGLVGIGGNNDTVFVQINGTGCTKLFDRIDSKKLH 5 | WWLAQVLGITRLVRLDLAVDDYTGNFDAKYAEKCFYEGAFRTAPRGQGPS 6 | MVPHKRITENGALMEEATIVGSRSSAIYWRIYNKKLEQKITDPDLIWYRN 7 | EVELKKCDIELLANPAASFAGICPFAASIECTPPVKFSRNKKAQGLEFMA 8 | RIAWVRRQCGVALAEVIAMTQGDLGEAFGMLIPHKHRRPDFELLGVPDSY 9 | TQLKNTLWS 10 | 11 | >fig|223524.1.peg.2 [Vibrio cholerae phage VGJphi] [Phage integrase] 12 | MANITGIVIKTFPKSGTTIAELNVLRPVETVNVEKFAQYGLGLNTDIPFN 13 | KQPLRIEPTYAKRLIETRAFVPNREYDIRFGSNPDDPLEVVAVELIPKDD 14 | DLKKYFTETLKK 15 | 16 | >fig|223524.1.peg.3 [Vibrio cholerae phage VGJphi] [Single stranded DNA-binding protein, phage-associated] 17 | MPVCALPNSQGFLAVTDKPLNECDGGYVAFTIQDYDYLMSYTRITPTDAG 18 | TAFSFGFMAVFALGYLYTYAVYIGKKLINLL 19 | 20 | >fig|223524.1.peg.4 [Vibrio cholerae phage VGJphi] [putative major capsid protein, phage related] 21 | MADIFGAIDFAGVAALVTAAGVAIIGITMAFKGISLGKRAVNKA 22 | 23 | >fig|223524.1.peg.5 [Vibrio cholerae phage VGJphi] [putative minor capsid protein, phage related] 24 | MLIALHDIQLIIFALLGGMSGFIAALNFR 25 | 26 | >fig|223524.1.peg.6 [Vibrio cholerae phage VGJphi] [putative adsorption protein, phage related] 27 | MVMFMRKFFIISLVISLYFTVLPAFAAYQLPFDQTKTFSTVQAAAEYYVN 28 | LLGGTSCKADGNRFKIYRVKSIGDPSFVIQQETYLDNKCQVFSSKGDISV 29 | TLIVVDDPTTCEASKGQTGKVGWNSYFWGSATPSRYICSSAYGGCVALTG 30 | DHLCINIDPEALKNDPSLYDCDALYIVQDTPCSPSGDYPFCTDENCSSFL 31 | PEPNPNPNPEPEPEPEPQPDPEHNPSDPTAPLPGSGGEVINPTVPPKPPT 32 | EETPKPDVETPDPTPDSNSDVVQSVTGMNEDMNELLTRLNSDNNKQLDDV 33 | NNQLLQLNTQSQRIVAQIAKQEKQDAAIYENTKALIQNLNKDVTTAVNKT 34 | TNAVNALGSKVDGLSDAVDGLGEDVSAIKDVITNVDTSGAGISGTCIESD 35 | TCTGFYESGYPDGISGIFSQHFEIVSESVTDTVKDFMKIDLSHAQRPSFS 36 | IPVLHFGNFSFDDYINLDWIFGFVRVCMMVSTAFLCRKIIFGG 37 | 38 | >fig|223524.1.peg.7 [Vibrio cholerae phage VGJphi] [VSK receptor, phage related] 39 | MLKDVFLWLIDGVLSAVNLLLEKALSLIEPMDVSSYLTGIPSGAAWVISA 40 | IGIPQCLGMIMSAIIVRILLQLVPFTRLGS 41 | 42 | >fig|223524.1.peg.8 [Vibrio cholerae phage VGJphi] [Zona occludens toxin] 43 | MIYAIVGRPRSGKSYESVVYHIIPAVKSGRKVITNIPLNMDMFVKVFGDS 44 | VRDLIRIVDAKFNEYGSMNRPFSKVDDYLDDWRDDKNRAPLYVIDEAHMV 45 | IPTRLGDQRYLSSIQCTVHYGIDIIILTQNLRKIHADIRAMIEMTYYCAK 46 | NTAFGSKKTYTKKVRIGDTREDLHIEQRTYKEHYFGFYQSHTQSAGSVVE 47 | AQAFDITPIWKRWPFWGSLVCFIIVILILAYYFQSRKSKHAEDVPPVPEH 48 | SQQTPSSDSSISHPPKPLQTIKAAPLSEPLRDFQLYVSGHAKQIAYKKMS 49 | FSREIDTRLTFYHVYISAYQDDKFSFSLNNIDLEKMGYQFEALTECVYRI 50 | TWGSNSRVITCIDESRFNQQKAETVFDHVPKLDI 51 | 52 | >fig|223524.1.peg.9 [Vibrio cholerae phage VGJphi] [Phage protein] 53 | MLRADCCPSKAQTRRKRKGAARKPAPSQLKRVPVPLIPIIDRIISQYKSC 54 | DLTSFSLLALYDYLVTQSFSLCEGSVFKGLFLDDVTFEPLDDPEHNPPSI 55 | QKGF 56 | 57 | >fig|223524.1.peg.10 [Vibrio cholerae phage VGJphi] [Transcriptional regulator] 58 | MLIKLPLLGVLSMNRSEMTKNFVFREFECGLSVEEAAKLCFKTVSEVKQW 59 | DAGEKIPPICKRLMRWHSRKELYYGDEWWGFRMEGGRLIFPTGDRVAPQQ 60 | LLAAIAILQIQAPDDAMTRSKLLKYARAMARIKGIK 61 | 62 | >fig|223524.1.peg.11 [Vibrio cholerae phage VGJphi] [Transcriptional regulator] 63 | MYANELLDAYKKAKNYVQDKQIAHDLNLSPQKISKMRTGVRYISDEEAIF 64 | LAESAGIDPEIALLGCHADRNENPRIKAIWESIAKKQNGLGLRTISMLCG 65 | GLAVSISQFNEAVSYFALCRLMVKVAINSNAYKTSAFGSFINESKRNDKE 66 | FCFS 67 | 68 | >fig|223524.1.peg.12 [Vibrio cholerae phage VGJphi] [Phage protein] 69 | MVTNGLTDCDRVCFFAEFAMITALTGWGDHQGEELRSSAQGGQIPIYEDS 70 | SPIFGDCK 71 | 72 | >fig|223524.1.peg.13 [Vibrio cholerae phage VGJphi] [Phage protein] 73 | MGDFIYYDNEPNIGINVYFVWGHRFFKNWPELEQYLAIHYGADPYQLVEI 74 | TNENYNELLLKGVFHAM 75 | 76 | -------------------------------------------------------------------------------- /old/genomes/225067.3.fas: -------------------------------------------------------------------------------- 1 | >fig|225067.3.peg.1 [Chlamydia phage 3] [Phage capsid protein #Fam0039] 2 | MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFNAGYLIPIFCDE 3 | VLPGDTFSLKEAFLARMATPIFPLMDNLRLDTQYFFVPLRLIWSNFQKFC 4 | GEQDNPDDSTDFLTPVLTAPTGGFTEGSIHDYLGLPTKVAGVQCAAFWHR 5 | AYNLIWNQYYRDENIQESVEVQMGDTTTDEVKNYELLKRGKRYDYFTSCL 6 | PWPQKGPAVTIGVGGKAPIEGLYMNVNSNNPVGKFVLDSQSTPRVLQDLQ 7 | GNKLSGIAAYNQTGKHVYVNSAWYTVTPQSEPGATLENGNYYTTQKPQIY 8 | ADLGATSPVTINSLREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDAR 9 | LQRAEYLGGSSTPVNISPIPQTSSTDSTSPQGNLAAYGTAIGSKRVFTKS 10 | FTEHGVILGLASVRADLNYQQGLDRMWSRRTRWDFYWPALSHLGEQAVLN 11 | KEIYCQGPSVKNSGGEIVDEQVFGYQERFAEYRYKTSKITGKFRSNATSS 12 | LDSWHLAQEFENLPTLSPEFIEENPPMDRVLAVSNEPHFLLDGWFSLRCA 13 | RPMPVYSVPGFIDHF 14 | 15 | >fig|225067.3.peg.2 [Chlamydia phage 3] [Nonstructural protein] 16 | MSKSLDIRRDLRSIAIRLRKLPASSDQMLQVL 17 | 18 | >fig|225067.3.peg.3 [Chlamydia phage 3] [Nonstructural protein] 19 | MWRIYESRTTYEYSRFSSFWSCARIILSPWNSFRSFRISWCTKAKCDCEA 20 | NC 21 | 22 | >fig|225067.3.peg.4 [Chlamydia phage 3] [Protein VP2] 23 | MNPEQLTNTLGSAVSGVAQGLSFLPGIASGVLGYLGAQKQNATAKQIARE 24 | QMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSKGGASSPAGASWSPNNPV 25 | ESAMNSGLAVQRLTYERKKMQAELQNLREQNRLIRNQAIREGYLAERDKY 26 | MRVAGVPVATEMLDRTSGLISSSARAFKNLFSRKGR 27 | 28 | >fig|225067.3.peg.5 [Chlamydia phage 3] [Phage capsid and scaffold] 29 | MFKSAYSEKKSVKMKFTQKSLTQQHNKDECDINNIVAKLNATGVLEHVER 30 | RSPRYMDCMDPMEYSEALNVVIEAQEQFDSLPAKIRERFGNDPEAMLDFL 31 | SREENYEEAKALGFVYEDGTSGAPQTLFEAGPKDDQNVANQEPGLAQK 32 | 33 | >fig|225067.3.peg.6 [Chlamydia phage 3] [Nonstructural protein] 34 | MRLKMARRRYRLPRRRSRRLFSRTALRMHPRNRLRRIMRGGIRF 35 | 36 | >fig|225067.3.peg.7 [Chlamydia phage 3] [Nonstructural protein] 37 | MTCAYPFVCFIDSDNQLFFPKGVKSSKPWDKVRELNALEQAQPEEYRVRW 38 | VVKPCLKCRFCRVQNAKIWSYRCMHEASLYSQNCFLTLTYEDRHLPENGS 39 | LVRDHPRLFLRRLREHIYPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPD 40 | KKLLSKKRGNPLFVSEKLMQLWPFGFSTVGSVTRQSAGYVARYSLKKVNG 41 | DSSQDHYGQRLPEFLMCSLKPGIGADWYEKYKRDVYPQDYLVVQDKGKSF 42 | KTRPPRYYDKLHSRFDPEEMEEIKQRRVEKFMALPELTQDKAEVKQYIFN 43 | DRTKRLFRDYEEESY 44 | 45 | >fig|225067.3.peg.8 [Chlamydia phage 3] [Nonstructural protein] 46 | MKVFTVFDIKTEIYQQPFFMQATGAAIRAFSDMVNEDPTKNQFAAHPEDY 47 | ILYEIGSYDDSTGTFIPLDVPKALGTGLDFKHKQ 48 | 49 | -------------------------------------------------------------------------------- /old/genomes/247080.1.fas: -------------------------------------------------------------------------------- 1 | >fig|247080.1.peg.1 [Ralstonia phage p12J] [Single stranded DNA-binding protein, phage-associated] 2 | MQKNRVVVDIHAITVREGTSKKNGQPYHMEECACMTTTEYVNPEGVVVTE 3 | TMPGMVMLPKHLNGKVRPGKFEATVGLGQFEGKLTLRIVDLSPVAVQQSG 4 | TVTSGSAIGATATKPEKVAA 5 | 6 | >fig|247080.1.peg.2 [Ralstonia phage p12J] [Phage minor capsid protein # based on annotation but no sims] 7 | MGPFSEFDPVRAAVGMFFMGASCFLTLIVGVNFFSWMEARADAARRRASV 8 | WREHCRWARSDFLDDLRMREEAYLELDGSKLDLADEFLREDLHQLGGLAG 9 | AW 10 | 11 | >fig|247080.1.peg.3 [Ralstonia phage p12J] [Phage minor capsid protein # based on annotation but no sims] 12 | MAQCVQIVSGQFQLDSAAASSCTGYLLLTADEVTLLHAVPPLSVSDGALI 13 | GSGMLGLWALAFVFRSAARAIYQREEE 14 | 15 | >fig|247080.1.peg.4 [Ralstonia phage p12J] [possible major coat protein] 16 | MNSNFKKGAFAVGAAVAAGSAMAEGVDVSAVVTTLGTGVAAIGLIGVAIL 17 | GLAAVVAIYNWVRKPIK 18 | 19 | >fig|247080.1.peg.5 [Ralstonia phage p12J] [Phage-encoded hemagglutinin-like protein] 20 | MPWSFFLRRARIWIRFRLARVLLAIALVFGPTLGFSATDSGSNGHMWVSG 21 | GQTGSSAVAACSAYVAVAYPGMVIDGYGGSGYCSGHWPSDPNQCGGSCNI 22 | GVQQLSDCAPGYQLQSDGSCKSNTPPPPNCADPSLMNKYRGAGYTTSSSP 23 | DSVPDYICIKGCQYDPGGVTVTYPNPNSVTGYTSGGRAGASSGKSCDMTN 24 | WPQITLDVDLSNATDPKNLPPSPEVCAAQGRFYGQVNGVDVCSPAIPPGG 25 | SVSTNNGSTTTQPGGTGASAPAGTPPDTSSSNTTCDGQNCTTTTVVVGGG 26 | GRTVNCGSVHVSAASVPAASGPATNDTCSTTVTVPQQQFCQQNPNAVVCK 27 | DDSAAGGADCSAPPSCSGDAISCAILSQQWNTRCELQKANDFSDYGVKLV 28 | NGQDPMSGQLPTPAKADQVDLSSKLSNVDDMGIAAQCLGNIDVPLSLPGG 29 | GWNLHIDTTPLCDIGKLLGYLNMLGTLMLCAYMLKGSF 30 | 31 | >fig|247080.1.peg.6 [Ralstonia phage p12J] [possible minor coat protein] 32 | MPFAALLASAIVGFLAQACVSLVGRVLVALGIGFVMFTGVDAMMTGMKTL 33 | FMQYVNGIGSISSVSVVGILGVLKVGTSMNMILTTLGIRASLSGLSGGSI 34 | RKMVQK 35 | 36 | >fig|247080.1.peg.7 [Ralstonia phage p12J] [possible phage assembly protein] 37 | MLTLITGQPGNGKSLYTIAFVEAKRKAESRPVFYFGIPELSLPWTMLDDP 38 | TKWHECPEKSIIVIDEVQKVMPPRPSSSKAPLHVSELETHRHKGFDLFFM 39 | TQDPSLVDNHLKKLAGEHIHLIRQWGRQKADLFKMQKVQDPTNANLKRAL 40 | HSSFPYPKEVFGWYKSADAHTHKKAIPLKYYMMYALPVVALAAALFGGWK 41 | LWKISHPDVPQVQVPRFWCRSCVN 42 | 43 | >fig|247080.1.peg.8 [Ralstonia phage p12J] [Phage protein] 44 | MTAKEYVASYVPRVPGLQYTAPAYDELTKPSRVPVPAACVQIRGGCECWT 45 | QQGTRLETTPQICDQVVKRGFFEAFEANGQMARSQERVQPAPQPVPAPPA 46 | QAQEVRVVGRRFQARASGPGASQTHRHRFGQGSAR 47 | 48 | >fig|247080.1.peg.9 [Ralstonia phage p12J] [Phage protein] 49 | MRDVTDNVTGELPGVXEQKRGRGRPRKAHALTNAERQAAFRARRKKEQGG 50 | SDRSVTVTKKPADVDAYDECRLEVEELRERVDELLFELREATAQHNEMVE 51 | QLALARRTIHSYKHELLKAYGKVGGGDPVKSVTRRRVTKKPAEEKVVTKV 52 | CTLEEWPFPVDPKRP 53 | 54 | >fig|247080.1.peg.10 [Ralstonia phage p12J] [Phage protein] 55 | MRTTTIEQNYQPRQFDSGFYRRLHRCAPLTSLAVPFDQRRAVQLRHDGFG 56 | EESSRDDIIVRVRRWPDGQREVVGYPVRRHYQNPFEGKFDVNVPKVRAKR 57 | GESDDQEKSMASAMQRARRKVRELAKTARLDHLLTLTYRGLMADRERAAR 58 | DWKAFVRRVRKDSRLVRDGESFPLRCCHRTSPERWHPISHVGVRGWRDAI 59 | ALRDAWHAVVGKGQGNVDIQGPKSKGRKRIVGVHRVAAYLSKYITKGTHH 60 | KLNERRYWSSKGIEIPERETIGQFRSENDDGSFRAGMDATMRYLVDTGAN 61 | WQGMCTYVSHGRKCFWFSLAEDGFDGDPFEPDDDDSFAIEV 62 | 63 | -------------------------------------------------------------------------------- /old/genomes/290650.2.fas: -------------------------------------------------------------------------------- 1 | >fig|290650.2.peg.1 [Anellovirus TT virus genotype 6] [hypothetical protein] 2 | MWQPPTQNGTQLERHWFESVWRSHAAFCSCGDCIGHLQHLATNLGRPPAP 3 | QPPRDQHPPHIRGLPALPAPPSNRNSWPGTGGDAAGGEAGGSRGAGDGGD 4 | GELADEDLLDAIALAADPQTQTPQERHPGQRKNARKRLRFSSPTQKTPAL 5 | DPLQSRNKRRRGGDTGGPGTRTTSPAAPAAATPQSPARVHCPRSPQNQEG 6 | AQPPPPTIFPCINKVFMFNPPGPKRITGYEAWRDEYETCKAWNRPPRSFY 7 | TDIPTYTWMPKAQDQFRVSFKLGFH 8 | 9 | >fig|290650.2.peg.2 [Anellovirus TT virus genotype 6] [hypothetical protein] 10 | MWQPPTQNGTQLERHWFESVWRSHAAFCSCGDCIGHLQHLATNLGRPPAP 11 | QPPRDQHPPHIRGLPALPAPPSNRNSWPGTGGDAAGGEAGGSRGAGDGGD 12 | GELADEDLLDAIALAAESSDTPATDRPPQAIECLAQYKQLTRNTSHSNSC 13 | GTRGTSEEASLARQVLRECNKNQMLLHFLQSTDPNAPRETPRSKKKRPKK 14 | TQIQQSNSEDSSPGSTPVKKQKTKRRRYRRARYKNNFSSSSSSSDSSESS 15 | SSPLPKKSSKSGGGTASTPYYLPMHKQGLYV 16 | 17 | >fig|290650.2.peg.3 [Anellovirus TT virus genotype 6] [hypothetical protein] 18 | MWQPPTQNGTQLERHWFESVWRSHAAFCSCGDCIGHLQHLATNLGRPPAP 19 | QPPRDQHPPHIRGLPALPAPPSNRNSWPGTGGDAAGGEAGGSRGAGDGGD 20 | GELADEDLLDAIALAAE 21 | 22 | >fig|290650.2.peg.4 [Anellovirus TT virus genotype 6] [hypothetical protein] 23 | MAWYWWRRRRRRGWWKPRRRRWRRRRARRRGPARRHRARRRSTDPNAPRE 24 | TPRSKKKRPKKTQIQQSNSEDSSPGSTPVKKQKTKRRRYRRARYKNNFSS 25 | SSSSSDSSESSSSPLPKKSSKSGGGTASTPYYLPMHKQGLYV 26 | 27 | >fig|290650.2.peg.5 [Anellovirus TT virus genotype 6] [hypothetical protein] 28 | MAWYWWRRRRRRGWWKPRRRRWRRRRARRRGPARRHRARRRVRRRRGRWR 29 | RRYRRWRRRGGRRRHRKKLIIKQWQPNFIRHCYIIGYMPLIICGENTFSH 30 | NYATHSDDMLSTGPYGGGMTTTKFTLRILFDEYQRHLNFWTVSNQDLDLA 31 | RYLGTKIIFFRHPTVDFVVQIHTQPPFQDTEITAPSIHPGMLILSKKHIL 32 | IPSLKTRPSKKHYVKVRVGAPRLFQDKWYPQSELCDVTLLVIYATACDLQ 33 | YPFGSPQTDNVCVNFQILGQPYYQHLKTALGLTEKTTYENHYKNNLYKKI 34 | KFYNTTETIAQLKPLVDATTNQTWSHYVNPNKLTTTPTSEITHNNTWYRG 35 | NAYNDKITDLPEIVKKSYYKATELAIPEAVKPTTDLFEYHAGIYSSIFLS 36 | PGRAYFETPGAYQDIIYNPFTDKGIGNIVWIDWLSKSDAVYSEKQSKCGI 37 | FDLPLWAAFFGYAEFCSKSTGDTAIAYNSRVCVRCPYTEPQLLNHNNPSQ 38 | GYVFYSYNFGKGKMPGGSSQVPIRMRWKWYVCMFHQLEVMEAICQSGPFA 39 | YHSDEKKAVLGIKYKFDWKWGGNPISQQIVRHPCNGQTSSGNRVPRSVQA 40 | VDPKYVSLQLVWHSWDFRRGLFGQAGIKRMQQESDALTLSPVHRPKRPKR 41 | DTQVKEKTPEKDSDSAVQLRRLQPWIHSSQETKDEEEEIPEGPVQEQLLQ 42 | QLQQQRLLRVQLESIAQEVLKIRRGHSLHPLLSSHA 43 | 44 | >fig|290650.2.peg.6 [Anellovirus TT virus genotype 6] [hypothetical protein] 45 | MAWYWWRRRRRRGWWKPRRRRWRRRRARRRGPARRHRARRRIVRHPCNGQ 46 | TSSGNRVPRSVQAVDPKYVSLQLVWHSWDFRRGLFGQAGIKRMQQESDAL 47 | TLSPVHRPKRPKRDTQVKEKTPEKDSDSAVQLRRLQPWIHSSQETKDEEE 48 | EIPEGPVQEQLLQQLQQQRLLRVQLESIAQEVLKIRRGHSLHPLLSSHA 49 | 50 | -------------------------------------------------------------------------------- /old/genomes/292443.3.fas: -------------------------------------------------------------------------------- 1 | >fig|292443.3.peg.1 [Vibrio cholerae phage KSF-1phi] [Rolling circle replication protein, phage related] 2 | MPCKHPHHDTVRPVKVDHLAFTFAYADLRHLDKSNDQDFINLQMPVYHEP 3 | KTKTKEQGAVCSTLEQIERHMEAHKNKVSKMLFHRFDLFMSKIMGFRLSP 4 | MRGRGLHGYNDSMVILDMTGQVECGLVGIGGNNDTVFVQINGTGCTKLFD 5 | RIDSKKLHWWLAQVLGITRLVRLDLAVDDYTGNFDAKYAEKCFYEGAFRT 6 | APRGQGPSMVPHKRITENGALMEEATIVGSRSSAIYWRIYNKKLEQKITD 7 | PDLIWYRNEVELKKCDIELLANPAASFAGICPFAASIECTPPVKFSRNKK 8 | AQGLEFMARIAWVRRQCGVALAEVIAMTQGDLGEAFGMLIPHKHRRPDFE 9 | LLGVPDSYTQLKNTLWS 10 | 11 | >fig|292443.3.peg.2 [Vibrio cholerae phage KSF-1phi] [Phage integrase] 12 | MANITGIVIKTFPKSGTTIAELNVLRPVETVNVEKFAQYGLGLNTDIPFN 13 | KQPLRIEPSYAKRLIETRAFVPNPWNMTFALVATLTTH 14 | 15 | >fig|292443.3.peg.3 [Vibrio cholerae phage KSF-1phi] [Phage protein] 16 | MLAPQALNALPGSHSSDLNEIKNFVWLFNKTYNFI 17 | 18 | >fig|292443.3.peg.4 [Vibrio cholerae phage KSF-1phi] [Phage protein] 19 | MNPITENFKGAIASGQANYTMVVNGVIGLAAIALGLGWYPWYLEVIVMVA 20 | FVSDALTVVVAVAYFMAFAYGFYTGVNAS 21 | 22 | >fig|292443.3.peg.5 [Vibrio cholerae phage KSF-1phi] [Phage protein] 23 | MLRSMTNTFLALLLFITLFLSLFPFKANAEIQCQIGISSGSVSWPGVTFG 24 | DKPYTCVRTCRYNLATVAVCFVNNGTCHGEFISNGNHCLNGAGQIDGSDG 25 | LRFGGNTVIPDPSADPQKPWDPNAPSPMPNKVQNVLNRMPTDTTSGRQQA 26 | QALKDMAFIEGMGVMTLDNILIKNSQLLDINKGYSSLMSTMSGQLYSIRN 27 | LSDYIEKNTSQTAAYSQMSANTLGNILNKLSDSGSGGGDSETYLKNISNA 28 | ISNHFIGNSYSALAHLDNTVSRLDSVKRTLDDNHNSFTNFFAYRMDSLEK 29 | ALSGIGWRRW 30 | 31 | >fig|292443.3.peg.6 [Vibrio cholerae phage KSF-1phi] [Phage protein] 32 | MGEDAFPNSIRKLPISKTFLKKTKDFKSLFLSNSNMKAALQRPFFNVKSH 33 | GPHD 34 | 35 | >fig|292443.3.peg.7 [Vibrio cholerae phage KSF-1phi] [Phage protein] 36 | MTKFTSGVFPALVDNAALISSVILFLAAFAGIKTIMGERE 37 | 38 | >fig|292443.3.peg.8 [Vibrio cholerae phage KSF-1phi] [Accessory cholera enterotoxin] 39 | MQFLLDLLGAIANAGDTVTEFFKSIPDYFGQLVVWGNAWYVKLKFLWLIY 40 | SLELAYKTAEYLLNDIGFNDMLASFFNALPDEIRYYAFIFKIPQAIGIYF 41 | NCLATAFVWKITRF 42 | 43 | >fig|292443.3.peg.9 [Vibrio cholerae phage KSF-1phi] [Zona occludens toxin] 44 | MAIFIRTGANGSYKSAYVAYFVILEALKAGRVVVTNMQGFETLDVIEKRF 45 | DITFPSTTRLIRIFSRDKNGIELWQHFFCWCPIGALIVIDECQDIFSKNI 46 | GFRMEKVFYRPLSDFLPMLPPDYESFFNARYLPADMSKLQACEMDDRGIA 47 | EYDETGRIIYPLSFNEGFMRHRHYNWDIHLLSPDWGQIDSAIRACAEECY 48 | FHKGRDAYFFARRKPLIYRHPKNVATLVIPKGKDPNVFPQKIPLDAHLLY 49 | KSTSTGQANQSGAINMLLKNPTILGSLLLGILSIGYFIYAFSGLVFGSSK 50 | TVADTSAQTSNTSVSQSPDSVPQTGGQNAPALSTGGDGHQASSVSPAPSH 51 | RIDTIKQMLGLYDLQTLYYTGHTTRQSQTKGFQFFVTLEAKTPEGTYYLD 52 | DTFLRANDIAYVHYDDCLLKLTKENITINVTCKPILREAVPDASQPPQVK 53 | LGALF 54 | 55 | >fig|292443.3.peg.10 [Vibrio cholerae phage KSF-1phi] [Phage protein] 56 | MEQIVITVDQLATLIEASYFYNFVAVLSALLFYDVLTYFLALGIRGFKAQ 57 | LDKRNCK 58 | 59 | >fig|292443.3.peg.11 [Vibrio cholerae phage KSF-1phi] [Phage protein] 60 | MRRRSTFNTTMCAFLMIFTKSQELRLNVNLKKIEMSFIRQPTH 61 | 62 | >fig|292443.3.peg.12 [Vibrio cholerae phage KSF-1phi] [Phage protein] 63 | MILSDNTTFLVGRKGTGKSTIILRLESEYRKKDDYLPCYIDTKTVFESTK 64 | SEYQNLDYLKGRIPDEALGRYLIAQISYQAK 65 | 66 | -------------------------------------------------------------------------------- /old/genomes/310953.3.fas: -------------------------------------------------------------------------------- 1 | >fig|310953.3.peg.1 [Coliphage ID11] [A protein] 2 | MFKTHSDYFNKPNIDAIKPLVETAGMSVLTQSPNLRIWKQCNTRIKLLEE 3 | ILAHYTNGIRRDDNGDFWMNPNSQLATTIAYRAHHKGHNPKFKQYPESFT 4 | LDDIITGKPIPQSAPDELQLSDEIGEDYRLTVLSIIEELQECYDVLGQLD 5 | INNTIDHKPLGNDHWDLLYEKPVYKHWYQLVSKRPLKDIRADYNYAKAKG 6 | VKDECSKILEESTMKSRRGFTVQRLMNAMRTAHTQGWYVVFDTLTLADDR 7 | LKDFYDNPNALRDYFRDIGRMVLTAEGRSVHDSSADCYQYFCVPEYGTQH 8 | GRLHFHAVHLMRTLPLGSLDPNFGKLVRTNRQINSLQNTWPYGYSMPIAV 9 | RYSQDAFSRAGWLWPVDSKGEPLKATSYMAVGFYVAKYVNKKSDIDMAAK 10 | GLGNKEWNNSLKTKINLIPKKVFRIRMSRNFGMKLLSMSHLSAETLMELT 11 | QVGYDVTPFNNILKQNAKKELKSRLAKKSVADVLEAQPVTTNLLKFMRNL 12 | TRTIGASSLQSFIASMTTKLTSTDISDETKNYVAAAGIAVANLRIKSKWT 13 | AGGK 14 | 15 | >fig|310953.3.peg.2 [Coliphage ID11] [A protein] 16 | MKSRRGFTVQRLMNAMRTAHTQGWYVVFDTLTLADDRLKDFYDNPNALRD 17 | YFRDIGRMVLTAEGRSVHDSSADCYQYFCVPEYGTQHGRLHFHAVHLMRT 18 | LPLGSLDPNFGKLVRTNRQINSLQNTWPYGYSMPIAVRYSQDAFSRAGWL 19 | WPVDSKGEPLKATSYMAVGFYVAKYVNKKSDIDMAAKGLGNKEWNNSLKT 20 | KINLIPKKVFRIRMSRNFGMKLLSMSHLSAETLMELTQVGYDVTPFNNIL 21 | KQNAKKELKSRLAKKSVADVLEAQPVTTNLLKFMRNLTRTIGASSLQSFI 22 | ASMTTKLTSTDISDETKNYVAAAGIAVANLRIKSKWTAGGK 23 | 24 | >fig|310953.3.peg.3 [Coliphage ID11] [Scaffolding protein B] 25 | MEQFTQNQNQPHTQESVQNTNVPQFRNETAINVSPVSGNPDGTDPSGLRR 26 | DPVQQHLEAERQERAQIEAGKEICRRRFGGATCDDQSAKIHAQFDPNNRS 27 | VQPTEFYRFNDHEINKYGYF 28 | 29 | >fig|310953.3.peg.4 [Coliphage ID11] [K protein] 30 | MKPKTTLLLQELLLLTYELNRSGLLVENEEIQSQLKKLEVVLLRNLSPSS 31 | QRAGKD 32 | 33 | >fig|310953.3.peg.5 [Coliphage ID11] [C protein] 34 | MRKFNLNLKNSRSSYFATFRHHLNVLAKTDALDEEKYLNMLGALLKDWFR 35 | YEEHFVHGKQSMLDILKERGLLSTSSTDTNHKGN 36 | 37 | >fig|310953.3.peg.6 [Coliphage ID11] [Scaffolding protein D] 38 | MSKSNESAVAFQTAIASIKLIQASSVLDLTEDDFDFLTRDRVWIATDRSR 39 | ARRAIEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 40 | AEFTENIVNGVERPVKASELFAFTLLVRAGNKDLIGHAETNIREQLRAQG 41 | VM 42 | 43 | >fig|310953.3.peg.7 [Coliphage ID11] [Phage lysozyme] 44 | MEHWTLSGILAFLLLLSLLLPSLLIMFIPLTFKPPASSWKALSLPKTSSM 45 | VLNAQLKPLNCSPSLFSFAPETKILSVTLKQTSVNNYVLKVLCKDL 46 | 47 | >fig|310953.3.peg.8 [Coliphage ID11] [Phage protein] 48 | MKKSIRRSGGKSKGARLWYVGGTQY 49 | 50 | >fig|310953.3.peg.9 [Coliphage ID11] [Phage major capsid protein #Fam0055] 51 | MSNVQTSADRVPHDLSHLVFEAGKIGRLKTISWTPVVAGDSFECDMVGAI 52 | RLSPLRRGLAVDSRVDVFSFYIPHRHIYGQQWIDFMKDGINAAPLPPVTC 53 | SSGWDAAAYLGTIPSSNLKVPKFLHQGYLNIYNNYFKPPWSDDLTYANPS 54 | NMPSEDYKWGVRVANLKSIWTAPLPPDTRTSENMTTGTSTIDIMGLQAAY 55 | AKLHTEQERDYFMTRYRDIMKEFGGHTSYDGDNRPLLLMRSEFWASGYDV 56 | DGTDQSSLGQFSGRVQQTFNHKVPRFYVPEHGVIMTLAVTRFPPTHEMEM 57 | HYLVGKENLTYTDIACDPALMANLPPREVSLKEFFHSSPDSAKFKIAEGQ 58 | WYRTQPDRVAFPYNALDGFPFYSALPSTKLKDRVLVNTDNYDEIFQSMQL 59 | AHWNMQTKFNINVYRHMPTTRDSIMTS 60 | 61 | >fig|310953.3.peg.10 [Coliphage ID11] [Major spike protein] 62 | MFQKFISKHNAPINSTQLAATKTPAVTAPVLSVPDLSRSTIQINATTTAV 63 | TTHSGLCHVVRIDETNPTNHHALSIAGSLSNVPADMIAFAIRFEVADGVV 64 | PTAVPALYDVYPIETFNNGKAISFKDAVTIDSHPRTVGNDVYAGIMLWSN 65 | AWTASTISGVLSVNQVNREATVLQPLK 66 | 67 | >fig|310953.3.peg.11 [Coliphage ID11] [Minor spike protein] 68 | MFGAIAGGIASALAGGLTGKLFGGGQSANSTGIQGNVLASDNNVVGANDA 69 | GIKSAIQGSTVPNSQEAAPSAISGILADTGKHALSSLTNAGTNKLMEAVG 70 | LSKSASDKGKDTKDYLASAFPELNPWERAGAGASGAGMQDAGFQNQKELT 71 | KMQLDNQKEIAKMQNETQKEIAGLQSVTSRENTKDTVYAQNEMLAYNQKE 72 | SMSRVGAILENTSLTKQQQTSEIMRQMLTQAQTAGQYFTNDQIKELTRKV 73 | GADIDAVRANTARTYVETDRSKQEVQNSRYASSQVGKTAKDVSNAVTDTA 74 | SSIVDYFRGVDQKVADVYNNYFKDGKSKGIESNHRSK 75 | 76 | -------------------------------------------------------------------------------- /old/genomes/313629.2.fas: -------------------------------------------------------------------------------- 1 | >fig|313629.2.peg.1 [unclassified Chlamydiamicrovirus Chlamydia phage 4] [Phage capsid protein #Fam0039] 2 | MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDE 3 | VLPGDTFSLKEAFLARMATPIFPLMDNLRLDTQYFFVPLRLLWSNFQKFC 4 | GEQDDPGDSTDFLTPILTAPQNGGFAEGSIHDYLGLPTKVAGVQCVAFWH 5 | RAYNLIWNQYYRDENIQDSVEVQMGDTTADEVNNYKLLKRGKRYDYFTSC 6 | LPWPQKGPAVTIGVGGIVPVQGLGIQWGGSTGPNPITASDWRDSVNPTYV 7 | NSATQTPTGTNKILSYGQAYYIKKPGEPATDPAPRAYVDLGSTSPVTINS 8 | LREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTP 9 | VNISPIPQTSSTDSTSPQGNLAAYGTAIGSKRVFTKSFTEHGVILGLASV 10 | RADLNYQQGLDRMWSRRTRWDFYWPALSHLGEQAVLNKEIYCQGPAVKDA 11 | QNGNVVVDEQVFGYQERFAEYRYKTSKITGKFRSNATSSLDSWHLAQEFE 12 | NLPTLSPEFIEENPPMDRVLAVNTEPDFLLDGWFSLRCARPMPVYSVPGL 13 | IDHF 14 | 15 | >fig|313629.2.peg.2 [unclassified Chlamydiamicrovirus Chlamydia phage 4] [Phage protein] 16 | MSKSLDIRRDLRSIAIRLRKLLASSDQMLQVL 17 | 18 | >fig|313629.2.peg.3 [unclassified Chlamydiamicrovirus Chlamydia phage 4] [Phage protein] 19 | MWRIYESRTTYEHSRFSSFWSCARIILSPWNSFRSFRISWCTKAKCHCEA 20 | NC 21 | 22 | >fig|313629.2.peg.4 [unclassified Chlamydiamicrovirus Chlamydia phage 4] [Phage capsid and scaffold] 23 | MNPEQLTNTLGSAVSGVAQGLSFLPGIASGVLGYLGAQKQNATAKQIARE 24 | QMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSKGGASSPAGASWSPNNPV 25 | ENAMNSGLAVQRLTYERKKMQAELQNLREQNRLIRNQAIREGYLAERDKY 26 | MRVAGVPVATEMLDKTSGLISSSAKAFKNLFSRKGR 27 | 28 | >fig|313629.2.peg.5 [unclassified Chlamydiamicrovirus Chlamydia phage 4] [Phage capsid and scaffold] 29 | MFKSAYSEKKSVKMKFTQKSLTQQHNKDECDINNIVAKLNATGVLEHVER 30 | RSPRYMDCMDPMEYSEALNVVIEAQEQFDSLPAKIRERFGNDPEAMLDFL 31 | SREENYEEAKALGFVYEDGTSGAPQTFFEADPKDDQNVANQEPGLAQK 32 | 33 | >fig|313629.2.peg.6 [unclassified Chlamydiamicrovirus Chlamydia phage 4] [hypothetical protein] 34 | MARRYRLSRRRSRRLFSRTALRMHRRNRLRRIMRGGIRF 35 | 36 | >fig|313629.2.peg.7 [unclassified Chlamydiamicrovirus Chlamydia phage 4] [Phage protein] 37 | MTCISPFVCFIDPCNQLWFPKGEKSSKPWDKVRELNAFEQTQPEEYRKRW 38 | ILMPCRRCKFCRVQNAKIWSYRCMHEASLYSQNCFLTLTYEDQHLPENGS 39 | LVRNHPTLFLRRLREHISPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPD 40 | KKLLSKKRGNPLFVSEKLMQLWPYGFSTVGSVTRQSAGYVARYSLKKVSR 41 | DISQDHYGQRLPEFLMCSLKPGIGADWYEKYKRDVYPQDYLVVQDKGKSF 42 | TTRPPRYYDKLHSRFDPEEMDEVKQKRVEKVMALPELSQDKAEVKQYIFN 43 | DRTKRLFRDYEEESY 44 | 45 | >fig|313629.2.peg.8 [unclassified Chlamydiamicrovirus Chlamydia phage 4] [Phage protein] 46 | MKVFTVFDIKTEIYQQPFFMQATGAAIRAFSDMVNEDPTKNQFAAHPEDY 47 | ILYEIGSYDDSTGTFIPLDVPKALGTGLDFKHKQ 48 | 49 | -------------------------------------------------------------------------------- /old/genomes/329852.2.fas: -------------------------------------------------------------------------------- 1 | >fig|329852.2.peg.1 [Levivirus Enterobacteria phage MS2] [Phage maturase] 2 | MRAFSTLDRENETFVPSVRVYADGETEDNSFSLKYRSNWTPGRFNSTGAK 3 | TKQWHYPSPYSRGALSVTSIDQGAYKRSGSSWGRPYEEKAGFGFSLDARS 4 | CYSLFPVSQNLTYIEVPQNVANRASTEVLQKVTQGNFNLGVALAEARSTA 5 | SQLATQTIALVKAYTAARRGNWRQALRYLALNEDRKFRSKHVAGRWLELQ 6 | FGWLPLMSDIQGAYEMLTKVHLQEFLPMRAVRQVGTNIKLDGRLSYPAAN 7 | FQTTCNISRRIVIWFYINDARLAWLSSLGILNPLGIVWEKVPFSFVVDWL 8 | LPVGNMLEGLTAPVGCSYMSGTVTDVITGESIISVDAPYGWTVERQGTAK 9 | AQISAMHRGVQSVWPTTGAYVKSPFSMVHTLDALALIRQRLSR 10 | 11 | >fig|329852.2.peg.2 [Levivirus Enterobacteria phage MS2] [Phage capsid and scaffold] 12 | MASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVR 13 | QSSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNMELTIPIFATNS 14 | DCELIVKAMQGLLKDGNPIPSAIAANSGIY 15 | 16 | >fig|329852.2.peg.3 [Levivirus Enterobacteria phage MS2] [Phage lysin] 17 | METRFPQQSQQTPASTNRRRPFKHEDYPCRRQQRSSTLYVLIFLAIFLSK 18 | FTNQLLLSLLEAVIRTVTTLQQLLT 19 | 20 | >fig|329852.2.peg.4 [Levivirus Enterobacteria phage MS2] [replicase] 21 | MSKTTKKFNSLCIDLPRDLSLEIYQSIASVATGSGDPHSDDFTAIAYLRD 22 | ELLTKHPTLGSGNDEATRRTLAIAKLREANGDRGQINREGFLHDKSLSWD 23 | PDVLQTSIRSLIGNLLSGYRSSLFGQCTFSNGAPMGHKLQDAAPYKKFAE 24 | QATVTPRALRAALLVRDQCAPWIRHAVRYNESYEFRLVVGNGVFTVPKNN 25 | KIDRAACKEPDMNMYLQKGVGAFIRRRLKSVGIDLNDQSINQRLAQQGSV 26 | DGSLATIDLSSASDSISDRLVWSFLPPELYSYLDRIRSHYGIVDGETIRW 27 | ELFSTMGNGFTFELESMIFWAIVKATQIHFGNAGTIGIYGDDIICPSEIA 28 | PRVLEALAYYGFKPNLRKTFVSGLFRESCGAHFYRGVDVKPFYIKKPVDN 29 | LFALMLILNRLRGWGVVGGMSDPRLYKVWVRLSSQVPSMFFGGTDLAADY 30 | YVVSPPTAVSVYTKTPYGRLLADTRTSGFRLARIARERKFFSEKHDSGRY 31 | IAWFHTGGEITDSMKSAGVRVIRTSEWLTPVPTFPQECGPASSPR 32 | 33 | -------------------------------------------------------------------------------- /old/genomes/329853.2.fas: -------------------------------------------------------------------------------- 1 | >fig|329853.2.peg.1 [Levivirus Enterobacteria phage BZ13] [Phage maturase] 2 | MFPKSNIDRNYKVKLISYDKKGKLVSDDSFEQVENYLFQNRSTTYKPGYI 3 | RRDFRRPTNFWNGYRCFNQPVGTFTRKLSDGGRQVADYGIVNPNKFTANS 4 | QHLGDNMVIYPGPFSINIDQRASVEVLNKLSQSNLNIGVAIAEAKMTASL 5 | LAKQSIALIRAYTAAKRGNWREVLSQLLISEHRFRAPAKDLGGRWLELQY 6 | GWLPLMSDLKAAYDLLTQTKLPAFMPLRVTRTVGGTHNYKVRNVESAGDT 7 | WSYRHRLSVNYRIWYFISDPRLAWASSLGLLNPLEIYWEKTPWSFVVDWF 8 | LPVGNLIEAMSNPLGLDIISGTKTWQLESKLNATLPASGWSGTAKLTAYA 9 | KAYDRSTFYSFPTPLPYVKSPLSGLHLANALALINQRLKR 10 | 11 | >fig|329853.2.peg.2 [Levivirus Enterobacteria phage BZ13] [Phage capsid and scaffold] 12 | MATLRSFVLVDNGGTGNVTVVPVSNANGVAEWLSNNSRSQAYRVTASYRA 13 | SGADKRKYAIKLEVPKIVTQVVNGVELPGSAWKAYASIDLTIPIFAATDD 14 | VTVISKSLAGLFKVGNPIAEAISSQSGFYA 15 | 16 | >fig|329853.2.peg.3 [Levivirus Enterobacteria phage BZ13] [Phage lysin] 17 | MGLKAKHKENLCSDSERSKRLYVWIALAIVLSDFTSIFSHWIWGLLILYL 18 | QTLMDLPTFVMNV 19 | 20 | >fig|329853.2.peg.4 [Levivirus Enterobacteria phage BZ13] [replicase] 21 | MFRFREIEKTLCMDRTRDCAVRFHVYLQSLDLGSSDPLSPDFDGLAYLRD 22 | ECLTKHPSLGDSNSDARRKELAYAKLMDSDQRCKIQNSNGYDYSHIESGV 23 | LSGILKTAQALVANLLTGFESHFLNDCSFSNGASQGFKLRDAAPFKKIAG 24 | QATVTAPAYDIAVAAVKTCAPWYAYMQETYGDETKWFRRVYGNGLFSVPK 25 | NNKIDRAACKEPDMNMYLQKGAGSFIRKRLRSVGIDLNDQTRNQELARLG 26 | SIDGSLATIDLSSASDSISDRLVWDLLPPHVYSYLARIRTSFTMIDGRLH 27 | KWGLFSTMGNGFTFELESMIFWALSKSIMLSMGVTGSLGIYGDDIIVPVE 28 | CRPTLLKVLSAVNFLPNEEKTFTTGYFRESCGAHFFKDADMKPFYCKRPM 29 | ETLPDVMLLCNRIRGWQTVGGMSDPRLFPIWKEFADMIPPKFKGGCNLDR 30 | DTYLVSPDKPGVSLVRIAKVRSGFNHAFPYGHENGRYVHWLHMGSGEVLE 31 | TISSARYRCKPNSEWRTQIPLFPQELEACVLS 32 | 33 | -------------------------------------------------------------------------------- /old/genomes/329855.2.fas: -------------------------------------------------------------------------------- 1 | >fig|329855.2.peg.1 [Allolevivirus Enterobacteria phage FI sensu lato] [Phage maturase] 2 | MPTLPRGLRFGSNGEVLNDFEALWFPERHTVDLSNGTCKLTGYITNLPGY 3 | SDIFPNKGVTAARTPYRSTVPVNHLGYRPVTTVEYIPDGTYVRLDGHVKF 4 | EGDLVNGSVDLTNFVISLAAQGGFDYQSVIGPRFSARFSAFSTKYGVLLG 5 | EGRETLKYLLLVVRRMREGYRAVRRGDLKRLRNVISTFEPSTIKGKRARA 6 | EFSQTYRDKLTGNKVEVRPSEGKWNSSSASDLWLEFRYGLMPLFYDIQSV 7 | MEDFMRVHKKIAKIQRFSAGHGKLETVSSRFYPDVHFSLEVTAVLQRRHR 8 | WGVIYQDTGSFATFNNGRLVPVKDWKTAAFALLNPAEVAWEVTPYSFVVD 9 | WFVNVGDMLEQMGQLYRHVDVVDGFDRKDIKLKSVSVRVLTNDVAHVASF 10 | QLRQAKLLHSYYSRVHTVAFPQISPQLDTEIRSVKHVIDSIALLTQRVKR 11 | 12 | >fig|329855.2.peg.2 [Allolevivirus Enterobacteria phage FI sensu lato] [Phage capsid and scaffold] 13 | MAKLNQVTLSKIGKNGDQTLTLTPRGVNPTNGVASLSEAGAVPALEKRVT 14 | VSVAQPSRNRKNFKVQIKLQNPTACTRDACDPSVTRSAFADVTLSFTSYS 15 | TDEERALIRTELAALLADPLIVDAIDNLNPAYXAALLVASSGGGDNPSDP 16 | DVPVVPDVKPPDGTGRYKCPFACYRLGSIYEVGKEGSPDIYERGDEVSVT 17 | FDYALEDFLGNTNWRNWDQRLSDYDIANRRRCRGNGYIDLDATAMQSDDF 18 | VLSGRYGVRKVKFPGAFGSIKYLLNIQGDAWLDLSEVTAYRSYGMVIGFW 19 | TDSKSPQLPTDFTQFNSANCPVQTVIIIPSL 20 | 21 | >fig|329855.2.peg.3 [Allolevivirus Enterobacteria phage FI sensu lato] [Phage capsid and scaffold] 22 | MAKLNQVTLSKIGKNGDQTLTLTPRGVNPTNGVASLSEAGAVPALEKRVT 23 | VSVAQPSRNRKNFKVQIKLQNPTACTRDACDPSVTRSAFADVTLSFTSYS 24 | TDEERALIRTELAALLADPLIVDAIDNLNPAY 25 | 26 | >fig|329855.2.peg.4 [Allolevivirus Enterobacteria phage FI sensu lato] [replicase] 27 | MPKTASRRREITQLLGKVDINFEDDIHMSIANDLFEAYGIPKLDSAEECI 28 | NTAFPSLDQGVDTFRVEYLRAEILSKFDGHPLGIDTEAAAWEKFLAAEEG 29 | CRQTNERLSLVKYHDNSILSWGERVIHTARRKILKLIGESVPFGDVALRC 30 | RFSGGATTSVNRLHGHPSWKHACPQDVTKRAFKYLQAFKRACGDVVDLRV 31 | NEVRTSNKAVTVPKNSKTDRCIAIEPGWNMFFQLGVGAVLRDRLRLWKID 32 | LNDQSTNQRLARDGSLLNHLATIDLSAASDSISLKLVELLMPPEWYDLLT 33 | DLRSDEGILPDGRVVTYEKISSMGNGYTFELESLIFAAIARSVCELLEID 34 | QSTVSVYGDDIIIDTRAAAPLMDVFEYVGFTPNRKKTFCDGPFRESCGKH 35 | WFQGVDVTPFYIRRPIRCLADMILVLNSIYRWGTVDGIWDPRALTVYEKY 36 | LKLLPRNWRRNRIPDGYGDGALVGLATTNPFVIVKNYSRLYPVLVEVQRD 37 | VKRSEEGSYLYALLRDRETRYSPFLRDADRTGFDEAPLATSLRRKTGRYK 38 | VAWIQDSAFIRPPYLITGIPEVKLAS 39 | 40 | -------------------------------------------------------------------------------- /old/genomes/334856.3.fas: -------------------------------------------------------------------------------- 1 | >fig|334856.3.peg.1 [Phage phiSMA9] [Phage-related protein] 2 | MAVDRARFRMAVEGGAGGFSPLSPGEKGRRAAAEIGPGSNTGQKGQQDAI 3 | IDYLTIVVPLSALEEVNCKKLDLLLFRIFGFRGEVVAGAIREKNWNFYEQ 4 | SAVLIDRENEVVGRVGIGGKKSTVCLSLTGMGCKWIRDWARVYKQCAMLD 5 | AKITRVDCAHDDYEGERLDVHALREVAAQGGFTEGGCPPRHRFISDEGHN 6 | TGCTLYVGGKGHKELCVYEKGKAEGLPSSRWVRAEVRLYGKHMEIPLDVL 7 | LNPGAYLRGSYSALQDLIKGVCTRLRTIRKHVEVSAEAAVNWLSRQGGPF 8 | LNVLHGAFGDSFTDFLLARVVRDGHPGRFRGIAKGEPLHRYVREELCLSA 9 | A 10 | 11 | >fig|334856.3.peg.2 [Phage phiSMA9] [Phage protein] 12 | MSASYDLFCRWKHVQKIQSDNAGALALGVSRATVSLWKQGKNAKIHYIER 13 | MAVDIGDSPEMWSAVVMAERSNSEDEKAAWRRIAQKLATVVMALCLFVGA 14 | ALPHDVQAMPQAGNALHDIHYAKSRIRRIWAFVGSAWQWLGLWLGSCLRP 15 | QSPAKDEIAA 16 | 17 | >fig|334856.3.peg.3 [Phage phiSMA9] [PI protein] 18 | MLVFNEGVPRAGKSYDAVKNHILPTIKKGRRVFARLNGLNHERIAEYLGM 19 | QVDDVQQLLTLVDTKDVAATFACYKDDVTGQWCIPDQFKDSLCVIDEVHE 20 | FYVAQRQPLPDAVENFWALLGQNGGDAVIMTQWINRVHQAVRARIERKNV 21 | FQKLTAVGMKNRYRVTFFHTTSPGKYERVGGKTEKYDPAIYPLYHGYAVG 22 | AENTEVYEEGGTNVWKALALKGGVMGVVGIVGAVAFIGFFLSGGGLVPEE 23 | EKSKEKQLHGVTAAAPADQSTIPNLPGVPAPKAAPDPMDALTPEQRYVAQ 24 | LSKGNRIRLALTAVFGDRQVGMVEWVDSSNNTVDQLTFDALIALGFRVRV 25 | FAYGANISADNYKLVATPWPRQAPRREEDPTLYRLDKPDAGTGIATAGSE 26 | AGAGVRVIGAQGAVSTAGGTLVRVGERPMGTFPESKPYPPSF 27 | 28 | >fig|334856.3.peg.4 [Phage phiSMA9] [Minor coat protein] 29 | MMNFLAFLMPHAGWLTDLTQWLLRQIQRFWDALVAFFNDLLILAIQTMLA 30 | LMIKMIGALPVPDVLKNYSIGTLLGNAGSTVGWFVQTFKLGECLALIGSA 31 | VAFRILRKVMTMGKW 32 | 33 | >fig|334856.3.peg.5 [Phage phiSMA9] [Adsorption protein] 34 | MSRLALLMLATAALMLSPRVLAADASCSTSPSVLESSCPDEGLAYAAAWA 35 | TANAQAAKSNTGSSGWCAGVKKQGVGSFLAYVTPCSSPGPAYETRTRSFS 36 | ALCSARAEEFGWQGGETAASVNACHNGCMYTSSLDPKGTAGVSFTPTGGT 37 | CTEADAPAPTPAGDGGDPGEGGGGDGGGNDPGGGDGGGDNGGGDGDGGGN 38 | NPGGGDGGSGGGDGDGDGDGDGDGDGDGGGPGPGPGPGEGDGDGPGEVGS 39 | DGGPLYERDKNLTLDKVFNDFKQQAEKLPIIQATKSFFTVSVGGSCPVFT 40 | LPASQYWDTMTFDLHCYGVIYESFLLMGWVLLAIAAFMAAKIALT 41 | 42 | >fig|334856.3.peg.6 [Phage phiSMA9] [Phage protein] 43 | MPICRVKSAAVEERHNSKTNSIIRSQMVGLDFGNGFELPFRVGLGSRPPY 44 | PPGEYDIDPQSFALSQYGDLILKRYVDLVPLSAKALPVAAKA 45 | 46 | >fig|334856.3.peg.7 [Phage phiSMA9] [Phage-related protein] 47 | MIEFDPHHRIDLTGPWAGFSFLGDRLITPEGRELLPEDLAWLSLTACQAQ 48 | EWRRMMEAARSVPSIDSSKRGGNLPAVTWDRPATVVNLRDVVSRRKQRSA 49 | VAMAGPDAEPPAVDLPILGPMPRQRV 50 | 51 | -------------------------------------------------------------------------------- /old/genomes/338101.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338101.2.peg.1 [Microvirus Enterobacteria phage ID21] [A protein] 2 | MATEIFSDVVKSVWSHATAKHSHLRMAVQVDNRSRLLSDLVYQLEKRLSE 3 | ETHLDDETYALYESQTGLLEDHMALVRKCAAQLDNSNTIDHRTPLDSECV 4 | FLFEMICPGVRYGKTLNSLWTKYVAQWPEKLIRQELDMVKPLSFKDEVAK 5 | YMEKMQEKTRKNRMTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNEN 6 | PNALRDYFRTVGRAVLRAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHV 7 | VHMVRTLPLGSHDPNFGRKVRNYRQINSFRGMWPYGFTQPIAVRYQHDAY 8 | SRKGWLWHVDKSGKAMQSKPYQAVAWYVTKYVAKQSDQRQKAITERQKKC 9 | KNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPLY 10 | QIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKNIRRLMKKTPEFNWQ 11 | SSIASMTVTLKNGDISNEARQYIIDAGITPSDLRAKATQTFGGK 12 | 13 | >fig|338101.2.peg.2 [Microvirus Enterobacteria phage ID21] [Phage capsid assembly] 14 | MQESTYGNMSEKGIQSSQQPEARNGVAVDGASQQQGTSGTESNQLRFQPS 15 | VSDSERERQKAIDLEHRRAAFTRHFGCAPGSEKYVEKYPSFDEKDTRVQL 16 | AEFYRFNDGHLKKWGYF 17 | 18 | >fig|338101.2.peg.3 [Microvirus Enterobacteria phage ID21] [Phage protein] 19 | MKHVNTLLMQELRLLICELKRLKLSAVSDPDFSQEKIHAELNSLLCKLSR 20 | YFDEAADVSYKG 21 | 22 | >fig|338101.2.peg.4 [Microvirus Enterobacteria phage ID21] [DNA maturase, phage-associated] 23 | MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQWFEIEQ 24 | WKGNHKKLLDDLKKRNYI 25 | 26 | >fig|338101.2.peg.5 [Microvirus Enterobacteria phage ID21] [Phage capsid assembly] 27 | MSNLVATDVNFATSVAALKMLQASAVLDITEEDFDFLTGDKIWIATDRNR 28 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 29 | AEFTENIVNGVERPVKAAELFAYTLRVKAGFKETVLSAEDNARQKLRASG 30 | VM 31 | 32 | >fig|338101.2.peg.6 [Microvirus Enterobacteria phage ID21] [Phage endolysin] 33 | MGHWTLSGILAFLLLLSLLLPSLLIMFIPLTFRRPASSWKARSLQKILLM 34 | ASSVRLKPLSSSRIPCVLRPDSKRRF 35 | 36 | >fig|338101.2.peg.7 [Microvirus Enterobacteria phage ID21] [Phage protein] 37 | MKKARRSPSRKKGARLWYVGGSQF 38 | 39 | >fig|338101.2.peg.8 [Microvirus Enterobacteria phage ID21] [Phage major capsid protein #Fam0055] 40 | MSNVQTSAERIPHDLSHLVFDAGKIGRLKVVSWTPVVAGDSFELDMIGAI 41 | RLSPLRRGLAVDSRVDLFTFYVPHRHVYGEQWIEFMKQGVDAAPLAPVQC 42 | SRGWDSAQYLATIPSSNLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPS 43 | NMEGEDVRFGVRACNLKTIWTAPLPPDTETSHSMETETNSIDIMGLQAAY 44 | AQLHTEQERDYFMTRYRDIVNEFGGSTSYDADNRPLLVMHSEFWASGYDV 45 | DGTDQSSLGQFSGRVQQTFKHSVPRFFCPEHGTMFTLALVRFPPTHEMEM 46 | HYLVGKEDLTYTDLACDPALMANLPPREVNMSQFFHSGSTSAKFKIAEGQ 47 | WYRMQPDRVALPYNYLDGFPFYSAIPSDDIKQRVLVNTDNYDEVFQSMQL 48 | AHWNMQTKFNCTIYRNMPTTRDSIMTS 49 | 50 | >fig|338101.2.peg.9 [Microvirus Enterobacteria phage ID21] [Phage capsid and scaffold] 51 | MFQVYVAKHVAPFTSMNRAFSISPAADPQVVNSGEIVAGRSTFRIASSID 52 | SASNGNGFAFVQMMDPNSPDSQQVFSVAASLSFSVDSNYVPCVVRFESSA 53 | AQPGRFAISKADFIPVEASALSARALSVRDCVTVDVKPRTEGNNVFVGLF 54 | LSSAAANAGNVTGVISMAQVDHEVTALQPLK 55 | 56 | >fig|338101.2.peg.10 [Microvirus Enterobacteria phage ID21] [Phage capsid and scaffold] 57 | MLGAVVGGIASALAGGAASKLFGGKSAPQAATESAGLSNGQGVIGMDQDA 58 | GIQSAIQGSNVPNGQIPAPTTTGGVMSDAGNMIKNAGKDLLDGVMTAGSD 59 | RVKQALIDKLGGNNAKKQGQATRDYLAAAFPELNAWERAGAGASGAGLES 60 | SSQDQQKELMRMQLDNQKDIAKMQMQNNLQIAGIQSATSRQNTKDSVYAQ 61 | NEMLQYNQRESQARVESILANTDLTAKQATHEIMRMALTRAQETGQHLTN 62 | SQVMALEKKVYAEIGKIHQDTQNARYGSSQVTAAAKDVTNMISDAAGGVA 63 | DWASQQWNSFFKDGKSNGIPLNTRK 64 | 65 | -------------------------------------------------------------------------------- /old/genomes/338102.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338102.2.peg.1 [Microvirus Enterobacteria phage ID32] [A protein] 2 | MATELFSDVVKATWSHATAKHPHLRMAVQVDNRSRLLSDLVYQLEKRLSE 3 | ETHLDDETYALYESQTGLLEDHMALVRKCAAQLDNSNTIDHRTPLDAECV 4 | FLFEMICPGVRYGKTLNSLWTKYVAQWPEKLIRQELDMVKPLSFKDEVAK 5 | YMEKMQEKTRKNRMTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNEN 6 | PNALRDYFRTVGRAVLRAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHV 7 | VHMVRTLPLGSHDPNFGRKVRNYRQINSFRGMWPYGFTQPIAVRYQHDAY 8 | SRKGWLWPVDKTGKAMQSKPYQAVAWYVTKYVAKQSDQRQKAITERQKKC 9 | KNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPLY 10 | QIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKNIRRLMKKTPEFNWQ 11 | SSIASMTVTLKNGDISDEARQYIIDAGITPFDLRAKATQTFGGK 12 | 13 | >fig|338102.2.peg.2 [Microvirus Enterobacteria phage ID32] [Phage capsid assembly] 14 | MQESTYGNLSEKGIQSSQQPEARNGVTVDGASQQQSASGAEPNQLRFQPS 15 | VSDSERERQKAIDLEHRRAAFARHFGCAPGSEKYVEKYPSFDEKDTRVQL 16 | AEFYRFHDGHLKKWGYF 17 | 18 | >fig|338102.2.peg.3 [Microvirus Enterobacteria phage ID32] [Phage protein] 19 | MKHVNTLLMQELRLLICELKRLKLSAVSDPDFSQEKIHAELDSLLRKLSR 20 | YFD 21 | 22 | >fig|338102.2.peg.4 [Microvirus Enterobacteria phage ID32] [DNA maturase, phage-associated] 23 | MLSSTRYYASYRATLTKQLMFLTKADFTDDDEKWLNAFGNLLRQWFQIED 24 | WKGNHKKLLDDLKKRDYI 25 | 26 | >fig|338102.2.peg.5 [Microvirus Enterobacteria phage ID32] [Phage capsid assembly] 27 | MSNLVATDVNFATSVAALKMLQASAVLDITEEDFDFLTGDKIWIATDRNR 28 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 29 | AEFTENIVNGVERPVKAAELFAYTLRVKAGFKETVLSAEENARQKLRASG 30 | VM 31 | 32 | >fig|338102.2.peg.6 [Microvirus Enterobacteria phage ID32] [Phage endolysin] 33 | MERWTLWDTLAFLLLLSLLLPSLLIMFIPSTFRRPASSWKALSLRKTLLM 34 | ASSVRLKPLSSSRTPCVLRLDSKKRF 35 | 36 | >fig|338102.2.peg.7 [Microvirus Enterobacteria phage ID32] [Phage protein] 37 | MKKARRSPSRKKGARLWYVGGSQF 38 | 39 | >fig|338102.2.peg.8 [Microvirus Enterobacteria phage ID32] [Phage major capsid protein #Fam0055] 40 | MSNVQTSAERIPHDLSHLVFDAGKIGRLKVVSWTPVVAGDSFELDMIGAI 41 | RLSPLRRGLAVDSRVDLFTFYVPHRHVYGEQWIEFMKQGVDAAPLAPVQC 42 | SRGWDSAQYLATIPSSNLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPS 43 | NMEGEDVRFGVRACNLKTIWTAPLPPDTETSHSMETETNSIDIMGLQAAY 44 | AQLHTEQERDYFMTRYRDIVNEFGGSTSYDADNRPLLVMHSEFWASGYDV 45 | DGTDQSSLGQFSGRVQQTFKHSVPRFFCPEHGTMFTLALVRFPPTHEMEM 46 | HYLVGKEDLTYTDLACDPALMANLPPREVNMSQFFHSGSASAKFKIAEGQ 47 | WYRMQPDRVALPYNYLDGFPFYSAIPSNDIKQRVLVNTDNYDEVFQSMQL 48 | AHWNMQTKFNCTIYRNMPTTRDSIMTS 49 | 50 | >fig|338102.2.peg.9 [Microvirus Enterobacteria phage ID32] [Phage capsid and scaffold] 51 | MFQVYVSKHVAPFTSVNRAFSIAPAANPQVVNSGEIVAGRSTFRIASSIG 52 | APSNGSGFSFVQMMDPNSPDSQQVFSVAASLSFSVDSNYIPCVVRFESTV 53 | AQPTSFDIATADFIPVEASALSPRALSVRDCVTVDVKPRTEGNNVFVGVV 54 | FFSAAANAGNVTGVVSMAQVDHEVTALQPLK 55 | 56 | >fig|338102.2.peg.10 [Microvirus Enterobacteria phage ID32] [Phage capsid and scaffold] 57 | MLGAVVGGIASALAGGAASKLFGGKPAAQAATESSGLSNGQGVIGMDQDA 58 | GIQSAIQGSNVPNGQIPAPTTTGGVMSDAGNMIKNAGKDLLDGVMTAGSD 59 | RVKQALIDKLGGNNAKRQGQATRDYLAAAFPELNAWERAGAGASGAGLES 60 | SSQDQQKELMRMQLDNQKDIAKMQMQNNLQIAGIQSATSRQNTKDSVYAQ 61 | NEMLQYNQRESQARVESILANTDLTAKQATHEIMRMALTRAQETGQHLTN 62 | SQIMALEKKVYAEIGKIHQDTQNARYGSSQVTAAAKDVTNMISDAAGGVA 63 | DWASQQWNSFFKDGKSNGIPLNTRK 64 | 65 | -------------------------------------------------------------------------------- /old/genomes/338103.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338103.2.peg.1 [Microvirus Enterobacteria phage NC35] [A protein] 2 | MATEVFSDVVKTVWSHATAKHAHLRMAVQVDNRSRLLSDLVYQLEKRLSE 3 | ETHLDDETLAVYESQTALLEDHMALVRKCAAQLDNSNTIDHRTPLDAECV 4 | FLFEMICPGVRYGKTLNSLWSKYVAQWPEKLIRQELDMVKPLSFKDEVAK 5 | YMEKMQEKTRKNRMTQKVINDMRIAHQKGWFFVFDTLTLADDRLQAFNEN 6 | PNALRDYFRTVGRAVLRAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHV 7 | VHMVRTLPLGSHDPNFGRKVRNYRQINSFRGMWPYGFTQPIAVRYQHDAY 8 | SRKGWLWPVDKSGKAMQSKPYQAVAWYVTKYVAKQSDQRQKAITERQKKC 9 | KNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPLY 10 | QIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKNIRRLMKKTPEFNWQ 11 | SSIASMTVTLKNGDISDEARQYIIDAGITPFDLRAKATQTFGGK 12 | 13 | >fig|338103.2.peg.2 [Microvirus Enterobacteria phage NC35] [Phage capsid assembly] 14 | MQESTYGNLSEKGIQSSQQPEARNGVTFDGASQQQSASGTEPNQLRFQSS 15 | VSDSERERQKAIDLEHRRTAFARHFGCAPGSEKYVEKYPSFDEKDTRVQL 16 | AEFYRFNDGHLKKWGYF 17 | 18 | >fig|338103.2.peg.3 [Microvirus Enterobacteria phage NC35] [Phage protein] 19 | MKHVNTLLMQELRLLICELKRLKLSAVSDPDFSQEEIHAELDSLLRKLSR 20 | YFD 21 | 22 | >fig|338103.2.peg.4 [Microvirus Enterobacteria phage NC35] [DNA maturase, phage-associated] 23 | MLSSTRYYASYRATLTKQLMFLTKADFTDDDEKWLNAFGNLLRQWFQIED 24 | WKGNHKKLLDDLKKRDYI 25 | 26 | >fig|338103.2.peg.5 [Microvirus Enterobacteria phage NC35] [Phage capsid assembly] 27 | MSNLVATDVNFATSVAALKMLQASAVLDITEEDFDFLTGDKIWIATDRNR 28 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 29 | AEFTENIVNGVERPVKAAELFAYTLRVKAGFKETVLSAEENARQKLRASG 30 | VM 31 | 32 | >fig|338103.2.peg.6 [Microvirus Enterobacteria phage NC35] [Phage endolysin] 33 | MERWTLWDTLAFLLLLSLLLPSLLIMFIPSTFRRPASSWKALSLRKTLLM 34 | ASSVRLKPLSSSRTPCVLRPDSKKRF 35 | 36 | >fig|338103.2.peg.7 [Microvirus Enterobacteria phage NC35] [Phage protein] 37 | MKKARRSPSRKKGARLWYVGGSQF 38 | 39 | >fig|338103.2.peg.8 [Microvirus Enterobacteria phage NC35] [Phage major capsid protein #Fam0055] 40 | MSNVQTSAERIPHDLSHLVFDAGKIGRLKVVSWTPVVAGDSFELDMIGAI 41 | RLSPLRRGLAVDSRVDLFTFYVPHRHVYGEQWIEFMKQGVDAAPLAPVQC 42 | SRGWDSAQYLATIPSSNLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPS 43 | NMKGEDVRFGVRACNLKTIWTAPLPPDTETSHSMETESNSIDIMGLQAAY 44 | AQLHTEQERDYFMTRYRDIVNEFGGSTSYDADNRPLLVMHSEFWASGYDV 45 | DGTDQSSLGQFSGRVQQTFKHSVPRFFCPEHGTMFTLVLVRFPPTHEMEM 46 | HYLVGKEDLTYTDLACDPALMANLPPREVNMSQFFHSGSASAKFKIAEGQ 47 | WYRMQPDRVALPYNYLDGFPFYSAIPSDDIKQRVLVNTDNYDEVFQSMQL 48 | AHWNMQTKFNCTIYRNMPTTRDSIMTS 49 | 50 | >fig|338103.2.peg.9 [Microvirus Enterobacteria phage NC35] [Phage capsid and scaffold] 51 | MFQVYVSKHVSPFTSMNRAFGITPSSNPTVVNSGEIQAGRSTFRIASSIG 52 | AASNGQGFAFVQMMDPYSPDNQQVFSVAASLSFSVDSNYVPCVIRFETAS 53 | TQPTNIDVSTADFIPLESSALSARALSVRDCVTVDVKPRIEGNNVFVGVV 54 | FCSAGASAGNVTGAVSMAQVDHEVTALQPLK 55 | 56 | >fig|338103.2.peg.10 [Microvirus Enterobacteria phage NC35] [Phage capsid and scaffold] 57 | MLGAVVGGIASALAGGAASKLFGGKSAPQAATESAGLSNGQGVIGMDQDA 58 | GIQSAIQGSNVPNGQIPAPTQTGGVMSDAKNMIKNAGKDLLDGVMTAGSD 59 | RVKQALVDGLSGNNAKKQGQATRDYLAAAFPELNAWERAGAGASGAGLES 60 | SSQDQQKELMRMQLDNQKDIAKMQMQNNLQIAGIQSATSRQNTKDSVYAQ 61 | NEMLQYNQRESQARVESILANTDLTVKQATHEIMRMALTRAQETGQHLTN 62 | SQIMALEKKVYAEIGKIHQDTQNSRYGSSQVTAAAKDVTNMISDAVGGFA 63 | DWASQQWNSFFKDGKSNGIPLNTRK 64 | 65 | -------------------------------------------------------------------------------- /old/genomes/338105.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338105.2.peg.1 [Microvirus Enterobacteria phage WA45] [A protein] 2 | MASEIFSDVVKSVWSHATAKHAHLRMAVQVDNRSRLLSDLVYQLEKRLSE 3 | ETHLDDETYALYESQTGLLEDHMALVRKCAAQLDNSNTIDHRTPLDAECV 4 | FLFEMICPGVRYGKTLNSLWTKYVAQWPEKLIRQELDMVKPLSFKDEVAK 5 | YMEKMQEKTRKNRMTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNEN 6 | PNALRDYFRTVGRAVLRAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHV 7 | VHMVRTLPLGSYDPNFGRKVRNYRQINSFRGMWPYGFTQPIAVRYQHDAY 8 | SRKGWLWPVDKSGKAMQSKPYQAVAWYVTKYVAKQSDQRQKAITERQKKC 9 | KNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPLY 10 | QIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKNIRRLMKKTPEFNWQ 11 | SSIASMTVTLKNGDISDEARQYIIDAGITPFDLRAKATQTFGGK 12 | 13 | >fig|338105.2.peg.2 [Microvirus Enterobacteria phage WA45] [Phage capsid assembly] 14 | MQESTYGNLSEKGIQSSQQPETRNGVTVDGASQQQSASGAEPNQLRFQPS 15 | VSDSERERQKAIDLEHRRAAFARHFGCAPGSEKYVEKYPSFDEKDTRVQL 16 | AEFYRFNDGHLKKWGYF 17 | 18 | >fig|338105.2.peg.3 [Microvirus Enterobacteria phage WA45] [Phage protein] 19 | MKHVNTLLMQELRLLICELKRLKLSAVSDPDFSQEKIHAELDSLLRKLSR 20 | YFD 21 | 22 | >fig|338105.2.peg.4 [Microvirus Enterobacteria phage WA45] [DNA maturase, phage-associated] 23 | MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQWFQIED 24 | WKGNHKKLLDDLKKRDYI 25 | 26 | >fig|338105.2.peg.5 [Microvirus Enterobacteria phage WA45] [Phage capsid assembly] 27 | MSNLVATDVNFATSVAALKMLQASAVLDITEEDFDFLTGDKIWIATDRNR 28 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 29 | AEFTENIVNGVERPVKAAELFAYTLRVKAGFKETVLSAEENARQKLRASG 30 | VM 31 | 32 | >fig|338105.2.peg.6 [Microvirus Enterobacteria phage WA45] [Phage endolysin] 33 | MERWTLWDTLAFLLLLSLLLPSLLIMFIPSTFRRPASSWKALSLRKTLLM 34 | ASSVRLKPLSSSRTPCVLRPDSKKRF 35 | 36 | >fig|338105.2.peg.7 [Microvirus Enterobacteria phage WA45] [Phage protein] 37 | MKKARRSPSRKKGARLWYVGGSQF 38 | 39 | >fig|338105.2.peg.8 [Microvirus Enterobacteria phage WA45] [Phage major capsid protein #Fam0055] 40 | MSNVQTSAERIPHDLSHLVFDAGKIGRLKVVSWTPVVAGDSFELDMIGAI 41 | RLSPLRRGLAVDSRVDLFTFYVPHRHVYGEQWIDFMKQGVDAAPLAPVQC 42 | SRGWDSAQYLATIPSSNLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPS 43 | NMEGEDVRFGVRACNLKTIWTAPLPPDTETSHSMETETNSIDIMGLQAAY 44 | AQLHTEQERDYFMTRYRDIVNEFGGSTSYDADNRPLLVMHSEFWASGYDV 45 | DGTDQSSLGQFSGRVQQTFKHSVPRFFCPEHGTMFTLALVRFPPTHEMEM 46 | HYLVGKEDLTYTDLACDPALMANLPPREVTMQQFFHSGNANAKFKIAEGQ 47 | WYRMQPDRVALPYNYLDGFPFYSAIPSDDIKQRVLVNTDNYDEVFQSMQL 48 | AHWNMQTKFNCTIYRNMPTTRDSIMTS 49 | 50 | >fig|338105.2.peg.9 [Microvirus Enterobacteria phage WA45] [Phage capsid and scaffold] 51 | MFQVYVSKHVAPFTSVNRAFSIAPAANPQVVNSGEIVAGRSTFRIASSIA 52 | SASNGSGFAFVQMMDPNSPDSQQVFSVAASLSFSVDSNYIPCVVRFESTV 53 | AQPTSFDIATADFIPVEASALSPRALSVRDCVTVDVKPRTEGNNVFVGVV 54 | FFSAAANAGNVTGVVSMAQVDHEVTALQPLK 55 | 56 | >fig|338105.2.peg.10 [Microvirus Enterobacteria phage WA45] [Phage capsid and scaffold] 57 | MLGAVVGGIASALAGGAASKLFGGKPAAQAATESSGLSNGQGVIGMDQDA 58 | GIQSAIQGSNVPNGQIPAPTQTGGVMSDAKNMIKNAGKDLLDGVMTAGSD 59 | RIKQALVDKLSGNDAKKQGQATRDYLAAAFPELNAWERAGAGASGAGLES 60 | SGQNQQKELMRMQLDTQKDIAKMQMHNNLQIAGIQSATSRENTKDSVYAQ 61 | NEMLKFNQQESQARVESILANTDLTAKQAAHEIMRMALTRAQETGQHLTN 62 | SQIMALEKKVYAEIGKIHQDTQNARYGSSQVTAAAKDVTNMITDAASGAA 63 | DWVSQQWNSFFKDGKSNGIPLNTRK 64 | 65 | -------------------------------------------------------------------------------- /old/genomes/338106.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338106.2.peg.1 [Microvirus Enterobacteria phage NC28] [A protein] 2 | MATELFSDVVKATWSHVTAKHPHLRMAVQVDNRSRLLSDLVYQLEKRLSE 3 | ETHLDDETYALYESQTGLLEDHMALVRKCAAQLDNSNTIDHRTPLDPECV 4 | FLFEMICPGVRYGKALNSLWSKYVAQWPEKLIRQELDMVKPLSFKDEVAK 5 | YMEKMQEKTRKNRMTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNEN 6 | PNALRDYFRTVGRAVLRAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHV 7 | VHMVRTLPLGSHDPNFGRKVRNYRQINSFRGMWPYGFTQPIAVRYQHDAY 8 | SRKGWLWPVDKTGKAMQSKPYQAVAWYVTKYVAKQSDQRQKAITERQKKC 9 | KNPLMAICLKKEFRVRSSRKLGMELPSMVHLSNKVLLELSRISFDSSPLY 10 | QIVKENAKKQLSLNIGVVPLHVIMDVRPQVRSMLKNIRRLMKKTPEFNWQ 11 | NSIASMTVTLKNGDISNEARQYIVDAGITPFDLRAKATQTFGGK 12 | 13 | >fig|338106.2.peg.2 [Microvirus Enterobacteria phage NC28] [Phage capsid assembly] 14 | MQKSFDGNLLEERIQGSQQPEARNGVTFNGSPEQQGPSGTEQNQLRFQPA 15 | LSDSERERQKAIELEHRRSAFARHYGCAPASEKYVEKYPSFDEKDTRIQL 16 | AEFYRFNDGHLKKWGYF 17 | 18 | >fig|338106.2.peg.3 [Microvirus Enterobacteria phage NC28] [Phage protein] 19 | MKHVNTLLMQELRLLICELKRLKLSAVSDPDFSQEKIHAELDSLLRKLSR 20 | HFD 21 | 22 | >fig|338106.2.peg.4 [Microvirus Enterobacteria phage NC28] [DNA maturase, phage-associated] 23 | MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQWFQIED 24 | WKGNHKKLFDDLKKREYI 25 | 26 | >fig|338106.2.peg.5 [Microvirus Enterobacteria phage NC28] [Phage capsid assembly] 27 | MSNLVATDVNFATSVAALKMLQSSAVLDITEEDFDFLTGDKIWIATDRNR 28 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 29 | AEFTENIVNGVERPVKAAELFAYTLRVKAGLKETVLNAEENARQKLRASG 30 | VM 31 | 32 | >fig|338106.2.peg.6 [Microvirus Enterobacteria phage NC28] [Phage endolysin] 33 | MERWTLLDTLAFLLLLSLLLPSLLIMFIPSTFRRPASSWKALSLRKTLLM 34 | VSSVRLKPLSSSRTPCVLKPDSKRRF 35 | 36 | >fig|338106.2.peg.7 [Microvirus Enterobacteria phage NC28] [Phage protein] 37 | MKKARRSPSRKKGARLWYVGGSQF 38 | 39 | >fig|338106.2.peg.8 [Microvirus Enterobacteria phage NC28] [Phage major capsid protein #Fam0055] 40 | MSNVQTSAERIPHDLSHLVFDAGKIGRLKVVSWTPVVAGDSFELDMIGAI 41 | RLSPLRRGLAVDSRVDLFTFYVPHRHVYGEQWIDFMKAGVDAAPLAPVTC 42 | SRGWDSAQYLATIPSSNLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPS 43 | NMEGEDVRFGVRACNLKTIWTAPLPPDTETSHSMETETNSIDIMGLQAAY 44 | AQLHTEQERDYFMTRYRDIVNEFGGSTSYDADNRPLLVMHSEFWASGYDV 45 | DGTDQSSLGQFSGRVQQTFKHSVPRFFCPEHGTMFTLALVRFPPTHEMEM 46 | HYLVGKEDLTYTDLACDPALMANLPPREVNMSQFFHSGSASAKFKIAEGQ 47 | WYRMQPDRVALPYNYLDGFPFYSAIPSDDINHRVLVNTDNYDEVFQSMQL 48 | AHWNMQTKFNCTIYRNMPTTRDSIMTS 49 | 50 | >fig|338106.2.peg.9 [Microvirus Enterobacteria phage NC28] [Phage capsid and scaffold] 51 | MFQVYVSKHVAPFTSKNRAFSIAPAANPQVVNSGEIVAGRSTFRIASSIA 52 | SAVNGSGFAFVQMMDPNSPDSQQVFSVAASLSFSVDSNYIPCVVRFEDNA 53 | AQPTDFDIATADFIPVEVSAISPRALSVRDCVTVDVKPRTQGNNVFVGVV 54 | FFSASANAGNVTGVVSMAQVDHEVTALQPLK 55 | 56 | >fig|338106.2.peg.10 [Microvirus Enterobacteria phage NC28] [Phage capsid and scaffold] 57 | MLGAVVGGIVSALAGGAASKLFGGKPAAQAATESSGLSNGQGVIGMDQDA 58 | GIQSAIQGSNVPNGQIPAPTQTGGVMSDAKNMIKNAGKDLLDGVMTAGSD 59 | RIKQALVDKLSGNNAKRQGQATRDYLASAFPELNPWERSGAGASGAGLES 60 | SGQDQQKELMRMQLDNQKDIAKMQMDNNLQIAGIQSATSRQNTKDTVYAQ 61 | NEMLQYNQRESQARVESILANTNLTDKQATHEIMRMALTRAQETGQHLTN 62 | SQIMALEKKVYAEIGKINQDTQNARYGSSQVTAAAKDVTNMITDATSGAA 63 | DWVSQQWNSLFKDGKSNGIPLNTRK 64 | 65 | -------------------------------------------------------------------------------- /old/genomes/338107.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338107.2.peg.1 [Microvirus Enterobacteria phage ID62] [A protein] 2 | MATEIFSDVVKAVWSHATAKHAHLRMAVQVDNRSRLLSDLVYQLEKRLSE 3 | ETHLDDETLAVYEFQTALLEDHMALVRKCAAQLDNSNTIDHRTPLDAECV 4 | FLFEMICPGVRYGKTLNSLWTKYVVQWPEKLIRQELDMVKPLSFKDEVAK 5 | YMEKMQEKTRKNRMTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNEN 6 | PNALRDYFRTVGRAVLRAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHV 7 | VHMVRTLPLGSHDPNFGRKVRNYRQINSFRGMWPYGFTQPIAVRYQHDAY 8 | SRKGWLWPVDKLGKAMQSKPYQAVAWYVTKYVAKQSDQRQKAITERQKKC 9 | KNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPLY 10 | QIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKNIRRLMKKTPEFNCQ 11 | SSIASMTVTLKNGDISDEARRYIIDAGITPFDLRAKATQTFGGK 12 | 13 | >fig|338107.2.peg.2 [Microvirus Enterobacteria phage ID62] [Phage capsid assembly] 14 | MQESTHGNLSEKGIQSSQQPEARNGAPFDGSPQQQGSSGTEPNQLRFQSS 15 | VSDSERERQKAIDLEHRRAAFARHFGCAPGSEKYVEKYPSFDEKDTRVQL 16 | SEFYRFNDGHLKKWGYF 17 | 18 | >fig|338107.2.peg.3 [Microvirus Enterobacteria phage ID62] [Phage protein] 19 | MKHVDTLLMQELRLLICELKRLRLSAVSDPDFSQEKIHAELDSLLCKLSR 20 | YFD 21 | 22 | >fig|338107.2.peg.4 [Microvirus Enterobacteria phage ID62] [DNA maturase, phage-associated] 23 | MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQWFQIED 24 | WKGNHKKLLDDLKKRNYI 25 | 26 | >fig|338107.2.peg.5 [Microvirus Enterobacteria phage ID62] [Phage capsid assembly] 27 | MSNLVATDVNFATSVAALKMLQSSAVLDITEEDFDFLTGDKIWIATDRNR 28 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 29 | AEFTENIVNGVERPVKAAELFAYTLRVKAGLKETVLNAEENARQKLRASG 30 | VM 31 | 32 | >fig|338107.2.peg.6 [Microvirus Enterobacteria phage ID62] [Phage endolysin] 33 | MERWTLWDTLAFLLLLSLLLPSLLIMFIPSIFRQPASSWRALSLRKTLLM 34 | ASSVRLKPLNSSRTPCVLKPDLKKRF 35 | 36 | >fig|338107.2.peg.7 [Microvirus Enterobacteria phage ID62] [Phage protein] 37 | MKKIRRSPSRKKGARLWYVGGSQF 38 | 39 | >fig|338107.2.peg.8 [Microvirus Enterobacteria phage ID62] [Phage major capsid protein #Fam0055] 40 | MSNVQTSAERIPHDLSHLVFEAGKIGRLKVVSWTPVVAGDSFELDMVGAI 41 | RLSPLRRGLAVDSRVDLFTFYVPHRHIYGEEWIQFMKDGVNAKPLAPVTC 42 | SRGWDSAQYLGTIPSSTLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPS 43 | NMEGEDVRFGVRACNLKTIWTAPLPPGTETSHSMKTEANSIDIMGLQAAY 44 | AQLHTEQERDYFMTRYRDIVNEFGGSTSYDADNRPLLVMHSEFWASGYDV 45 | DGTDQSSLGQFSGRVQQTFKHSVPRFFCPEHGTMFTLALVRFPPTHEMEM 46 | HYLVGKEDLTYTDLACDPALMANLPPREVNMKQFFHSGDANAKFKIAEGQ 47 | WYRMQPDRVALPYNYLDGFPFYSAIPSSDIKQRVLVNTDNYDEVFQSMQL 48 | AHWNMQTKFNCTIYRNMPTTRDSIMTS 49 | 50 | >fig|338107.2.peg.9 [Microvirus Enterobacteria phage ID62] [Phage capsid and scaffold] 51 | MFQVYVSKHVAPFTSKNRAFSISPAANPQVVNSGEIVAGRSTFRVASSIG 52 | AASNGSGFAFVQMMDPNSPDSQQVFSVAASLSFSVDSNYIPCVVRFESTA 53 | AQPTGFNIATSDFIPVEASALSPRALSVRDCVTVDVKPRAEGNNVFVGVV 54 | FFSASANAGNVTGVVSMAQVDHEVTALQPLK 55 | 56 | >fig|338107.2.peg.10 [Microvirus Enterobacteria phage ID62] [Phage capsid and scaffold] 57 | MIGAVVGGIASALASGAASKLFGGKPAAQAATESSGLSNGQGVIGMDNDA 58 | GIQSAIQGSNVPNGQIPAPTQTGGVMADAKNMIKNAGKDLLDGVMTAGSD 59 | RVKQALVDKLSGNNAKKQGQATRDYLAAAFPELNAWERAGAGASGAGLES 60 | SGQDQQKELMRMQLDTQKDIAKMQMQNNLQIAGIQSATSRQNTKDSVYAQ 61 | NEMLQYNQRESQARVESILANTDLTAKQATHEIMRMALTRAQETGQHLTN 62 | SQIMALEKKVYAEIGKIHQDTQNARYGSSQVTATAKDVSNMITDAASGFG 63 | DWASQQWNSFFKDGKSNGIPLNTRK 64 | 65 | -------------------------------------------------------------------------------- /old/genomes/338109.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338109.2.peg.1 [Microvirus Enterobacteria phage NC3] [A protein] 2 | MATEIFSDVVKAVWSHATAKHAHLRLAVQVDNRSRLLSDLVHQLEKRLSE 3 | ETHLDDETLAVYEYQTALLEDHMALVRKCAAQLDNSNTIDHRTPLDAECV 4 | FLFEMICPGVRYGKTLNSLWTKYVAQWPEKLIRQELDMVKPLSFKDEVAK 5 | YMEKMQEKTRKNRMTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNEN 6 | PNALRDYFRTVGRAVLRAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHV 7 | VHMVRTLPLGSHDPNFGRKVRNYRQINSFRGMWPYGFTQPIAVRYQHDAY 8 | SRKGWLWPVDKSGKAMQSKPYQAVAWYVTKYVAKQSDQRQKAITERQKKC 9 | KNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPLY 10 | QIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKNIRRLMKKTPEFNWQ 11 | SSIASMTVTLKNGDISDEARQYIIDAGITPFDLRAKATQTFGGK 12 | 13 | >fig|338109.2.peg.2 [Microvirus Enterobacteria phage NC3] [Phage capsid assembly] 14 | MQESTYGNLSEKGIQSSQQPEARNGVAVDGASQQQSASGTEPNQLRFQPS 15 | VSDSERERQKAIDLEHRRAAFARHFGCAPGSEKYVEKYPSFDEKDTRVQL 16 | AEFYRFNDGHLKKWGYF 17 | 18 | >fig|338109.2.peg.3 [Microvirus Enterobacteria phage NC3] [Phage protein] 19 | MKHVNTLLMQELRLLICELKRLKLSAASDPDFSQEKIHAELDSLLRKLSR 20 | YFD 21 | 22 | >fig|338109.2.peg.4 [Microvirus Enterobacteria phage NC3] [DNA maturase, phage-associated] 23 | MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQWFQIED 24 | WKGNHKKLLDDLKKRDYI 25 | 26 | >fig|338109.2.peg.5 [Microvirus Enterobacteria phage NC3] [Phage capsid assembly] 27 | MSNFVATDVNFATSVAALKMLQASAVLDITEEDFDFLTGDKIWIATDRNR 28 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 29 | AEFTENIVNGVERPVKAAELFAYTLRVKAGFKETVLSAEENARQKLRASG 30 | VM 31 | 32 | >fig|338109.2.peg.6 [Microvirus Enterobacteria phage NC3] [Phage endolysin] 33 | MERWTLWDTLAFLLLLSLLLPSLLIMFIPSTFRRPASSWKALSLRKTLLM 34 | ASSVRLKPLSSSRTPCVLRPDSKKRF 35 | 36 | >fig|338109.2.peg.7 [Microvirus Enterobacteria phage NC3] [Phage protein] 37 | MKKARRSPSRKKGARLWYVGGSQF 38 | 39 | >fig|338109.2.peg.8 [Microvirus Enterobacteria phage NC3] [Phage major capsid protein #Fam0055] 40 | MSNVQTSAERIPHDLSHLVFDAGKIGRLKVVSWTPVVAGDSFELDMIGAI 41 | RLSPLRRGLAVDSRVDLFTFYVPHRHVYGEQWIEFMKQGVDAAPLAPVEC 42 | SRGWDSAQYLATIPSSNLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPS 43 | NMEGEDVRFGVRACNLKTIWTAPLPPDTETSHSMETETNSIDIMGLQAAY 44 | AQLHTEQERDYFMTRYRDIVNEFGGSTSYDADNRPLLVMHSEFWASGYDV 45 | DGTDQSSLGQFSGRVQQTFKHSVPRFFCPEHGTMFTLALVRFPPTHEMEM 46 | HYLVGKENLTYTDLACDPALMANLPPREVNMSQFFHSGSASAKFKIAEGQ 47 | WYRMQPDRVALPYNYLDGFPFYSAIPSDDIKQRVLVNTDNYDEVFQSMQL 48 | AHWNMQTKFNCTIYRNMPTTRDSIMTS 49 | 50 | >fig|338109.2.peg.9 [Microvirus Enterobacteria phage NC3] [Phage capsid and scaffold] 51 | MFQVYVAKHVAPFTSMNRAFSISPAADPQVVNSGEIVAGRSTFRIASSIG 52 | SASNGNGFAFVQMMDPNSPDSQQVFSVAASLSFSVDSNYVPCVVRFESSA 53 | AQPGRFAISEADFIPVEASALSARALSVRDCVTVDVKPRTEGNNVFVGLF 54 | LSSAAANAGNVTGVISMAQVDHEVTALQPLK 55 | 56 | >fig|338109.2.peg.10 [Microvirus Enterobacteria phage NC3] [Phage capsid and scaffold] 57 | MLGAVVGGIASALAGGAASKLFGGKPAAQAATESSGLSNGQGVIGMDQDA 58 | GIQSAIQGSNVPNGQIPAPTQTGGVMSDAKNMIKNAGKDLLDGVMTAGSD 59 | RIKQALVDKLSGNDAKKQGQATRDYLAAAFPELNAWERAGAGASGAGLES 60 | SGQNQQKELMRMQLDTQKDIAKMQMHNNLQIAGIQSATSRENTKDSVYAQ 61 | NEMLKFNQQESQARVESILANTDLTAKQATHEIMRMALTRAQETGQHLTN 62 | SQTMALEKKVYAEIGKIHQDTQNARYGSSQVTAAAKDVTNMISDAAGGFA 63 | DWASQQWNSFFKDGKSNGIPLNTRK 64 | 65 | -------------------------------------------------------------------------------- /old/genomes/338110.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338110.2.peg.1 [Microvirus Enterobacteria phage NC29] [A protein] 2 | MATENFFDVVKTVWSHATAKHAHLRMAVQVDNRSRLLSDLVYQLEKRLSE 3 | ETHLDDETYSLYESQTGFLEDHMSLVRKCAAQLDNSNTIDHRTSLDAECV 4 | FLFEMICPGVRYGKTLNSLWTKYVAQWPEKLIRQELDMVKPLSFKDEVAR 5 | YMEKMQEKTRKNRMTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNEN 6 | PNALRDYFRTVGRAVLRAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHV 7 | VHMVRTLPLGSHDPNFGRKVRNYRQINSFRGMWPYGFTQPIAVRYQHDAY 8 | SRKGWLWPVDKSGKAMQSKPYQAVAWYVTKYVAKQSDQRQKAITERQKKC 9 | KNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPLY 10 | QIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKNIRRLMKKTPEFNWQ 11 | SSIASMTVTLKNGDISDEARQYIIDAGITPFDLRAKATQTFGGK 12 | 13 | >fig|338110.2.peg.2 [Microvirus Enterobacteria phage NC29] [Phage capsid assembly] 14 | MQESTYGNLSEKGIQSSQQPEARNGVTVDGASQQQSASGAESNQLRFQPS 15 | VSDSERERQKAIDLEHRRAAFARHFGCAPGSEKYVEKYPSFDEKDTRVQL 16 | AEFYRFNDGHLKKWGYF 17 | 18 | >fig|338110.2.peg.3 [Microvirus Enterobacteria phage NC29] [Phage protein] 19 | MKHVNTLLMQELRLLICELKRLKLSAVSDPNFSQEKIHAELDSLLRKLSR 20 | YFD 21 | 22 | >fig|338110.2.peg.4 [Microvirus Enterobacteria phage NC29] [DNA maturase, phage-associated] 23 | MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQWFQIED 24 | WKGNHKKLLDDLKNRHYI 25 | 26 | >fig|338110.2.peg.5 [Microvirus Enterobacteria phage NC29] [Phage capsid assembly] 27 | MSNLVATDVNFATSVAALKMLQASAVLDITEEDFDFLTGDKIWIATDRNR 28 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 29 | AEFTENIVNGVERPVKAAELFAYTLRVKAGFKETVLSAEDNARQKLRASG 30 | VM 31 | 32 | >fig|338110.2.peg.6 [Microvirus Enterobacteria phage NC29] [Phage endolysin] 33 | MERWTLLDTLAFLLLLSLLLPSLLIMFIPSTFRRPVSSWKALSLRRTLLM 34 | ASNVRLKPLNSLRTPCVLRLDSKKRF 35 | 36 | >fig|338110.2.peg.7 [Microvirus Enterobacteria phage NC29] [Phage protein] 37 | MKKARRSPSRKKGARLWYVGGSQF 38 | 39 | >fig|338110.2.peg.8 [Microvirus Enterobacteria phage NC29] [Phage major capsid protein #Fam0055] 40 | MSNVQTSAERIPHDLSHLVFEAGKIGRLKVVSWTPVVAGDSFELDMIGAI 41 | RLSPLRRGLAVDSRVDLFTFYVPHRHVYGEQWIEFIKEGVNAPPLAPVQC 42 | SRGWDSAQYLATIPSSNLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPS 43 | NMEGEDVRFGVRACNLKTIWTAPLPPDTETSHSMETETNSIDIMGLQAAY 44 | AQLHTEQERDYFMTRYRDIVNEFGGSTSYDADNRPLLVMHSEFWASGYDV 45 | DGTDQSSLGQFSGRVQQTFKHSVPRFFCPEHGTMFTLALVRFPPTHEMEM 46 | HYLVGKENLTYTDLACDPALMANLPPREVNMSQFFHSGSASAKFKIAEGQ 47 | WYRMQPDRVALPYNYLDGFPFYSAIPSHDIKQRVLVNTDNYDEVFQSMQL 48 | AHWNMQTKFNCTIYRNMPTTRDSIMTS 49 | 50 | >fig|338110.2.peg.9 [Microvirus Enterobacteria phage NC29] [Phage capsid and scaffold] 51 | MFQVYVAKHVAPFTSMNRTFSISPAAAPQVVNSGEIVAGRSTFRIASSIG 52 | SASNGNGFAFVQMMDPNSPDSQQVFSVAASLSFSVDSNYVPCVVRFESSF 53 | SQPGQFAIAEADFIPVESSALSARALSVRDCVTVDVKPRAEGNNVFVGLF 54 | LSSAAANAGNVTGVISMAQVDHEVTALQPLK 55 | 56 | >fig|338110.2.peg.10 [Microvirus Enterobacteria phage NC29] [Phage capsid and scaffold] 57 | MLGAVVGGIASALAGGAASKLFGGKPASQAATESAGLSNGQGVIGMDQDA 58 | GIQSAIQGSNVPNGQIPAPTTTGGVMSDAGNMIKNAGKDLLDGVMTAGSD 59 | RVKQALIDRLGGNNAKRQGKATRDYLAAAFPELNAWERAGAVASGSGLES 60 | SSQDQQKELMRMQLDNQKDIAKMQMQNNLQIAGIQSATSRQNTKDSVYAQ 61 | NEMLQYNQRESQARVESILANTNLTDKQATHEIMRMALTRAQETGQHLTN 62 | SQIIALEKKVYAEIGKIHQDTQNSRYGSSQVTAAAKDVTNMITDAASGAA 63 | DWASQQWNSFFKDGKSNGIPLNTRK 64 | 65 | -------------------------------------------------------------------------------- /old/genomes/338111.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338111.2.peg.1 [Microvirus Enterobacteria phage ID1] [A protein] 2 | MVRSYYPSECHADYFDFERIDALKPAIEACGISTLSQSPMLGFHKQMDNR 3 | IKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFESVTEKLMDELAQ 4 | WYNVLPQLDINNTIDHRPEGDEKWFLENEKRVTQFCRKLAAERPLKDIRD 5 | GYNYPKKKGIKDECSKLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVF 6 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKANDSHADCYQYF 7 | CVPEYGSANGRLHFHAVHFMRTLPSGSVDPNFGRRVRNRRQLNSLQNTWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMRLRLAKVTVADVLAAQPVTT 11 | NLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338111.2.peg.2 [Microvirus Enterobacteria phage ID1] [A protein] 15 | MKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD 16 | YFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGSANGRLHFHAVHFMRT 17 | LPSGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMTNLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMRLRLAKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQSFI 21 | ASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK 22 | 23 | >fig|338111.2.peg.3 [Microvirus Enterobacteria phage ID1] [Phage capsid assembly] 24 | MEQLTKNQTIATSQEAVQNQNEPQLRDENAHNDQSVNGMLNPTYQAGLRR 25 | DAVQPDSEAERKKRDEIAAGKSYCSRRFGGATCDDKSAQIYARFDKNDRR 26 | VQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338111.2.peg.4 [Microvirus Enterobacteria phage ID1] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLRDLSPST 30 | NDSVKD 31 | 32 | >fig|338111.2.peg.5 [Microvirus Enterobacteria phage ID1] [DNA maturase, phage-associated] 33 | MRKFDLSLRNSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 34 | YESHFVHGRDSLVDILKERGLLSDSDAVQPLIGKKS 35 | 36 | >fig|338111.2.peg.6 [Microvirus Enterobacteria phage ID1] [Phage capsid assembly] 37 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLIDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338111.2.peg.7 [Microvirus Enterobacteria phage ID1] [Phage endolysin] 43 | MVRWTLWDILAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALSLRKTLLM 44 | ASSVRLRPLNCSRLPCVYAQETLTFLLTQKRTSAKNYAQKE 45 | 46 | >fig|338111.2.peg.8 [Microvirus Enterobacteria phage ID1] [Phage protein] 47 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338111.2.peg.9 [Microvirus Enterobacteria phage ID1] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIQFMKDGVNASPLPTVNT 52 | TGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMADRTEANPN 53 | ELNEDDARYGFRCCHLKNIWTAPLPPETELSRLMTTSTTSIDIMGLQAAY 54 | ANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDASKKFKIAEGQ 57 | WYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 59 | 60 | >fig|338111.2.peg.10 [Microvirus Enterobacteria phage ID1] [Phage capsid and scaffold] 61 | MFQTFISRHNSNFFSDKLFASSVTPASLAPVLQTPKAASSTLYFDSLTVN 62 | AANGGFLHCIQMDTSVNAANQVVSVGADIAFDSDPKFFACLVRFESASVP 63 | TTLPTYYDVYPLDGRHDSGHYTVKDCVTIDILPRTPSNNVYVGFMVWSNF 64 | TATKCRGLISLNQVIKEIICLQPLK 65 | 66 | >fig|338111.2.peg.11 [Microvirus Enterobacteria phage ID1] [Phage capsid and scaffold] 67 | MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDA 68 | GIKSAIQGSNVPNPDEAAPNFVSGAMAKAGKGLLEGTLQAGTSAVSDKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSAGMVDAGFEN 70 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | LTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/338112.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338112.2.peg.1 [Microvirus Enterobacteria phage ID22] [A protein] 2 | MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFHKQMDNR 3 | IKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSFTEKLMDELAQ 4 | CYNVLSQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRD 5 | EYNYPKKKGIKDECSKLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVF 6 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKANDSHADCYQYF 7 | CVPEYGSANGRLHFHAVHFMRTLPSGSVDPNFGRRVRNRRQLNSLQNTWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMKLRLAKVTVADVLAAQPVTT 11 | NLLKFMRASIKMIGVSNLQNFIASMTQKLTLLDISDESKNYLDKAGITTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338112.2.peg.2 [Microvirus Enterobacteria phage ID22] [A protein] 15 | MKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD 16 | YFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGSANGRLHFHAVHFMRT 17 | LPSGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMTNLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMKLRLAKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQNFI 21 | ASMTQKLTLLDISDESKNYLDKAGITTACLRIKSKWTAGGK 22 | 23 | >fig|338112.2.peg.3 [Microvirus Enterobacteria phage ID22] [Phage capsid assembly] 24 | MEQLTKNQTIATSQEAVQNQNESQLRDENAHNDQSVNGMLNPTYQAGLRR 25 | DAVQPDSEAERKKRDEIAAGKSYCSRRFGGATCDDKSAQIYARFDKNDRR 26 | VQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338112.2.peg.4 [Microvirus Enterobacteria phage ID22] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILARLEKLLLRDLSPST 30 | NDSVKD 31 | 32 | >fig|338112.2.peg.5 [Microvirus Enterobacteria phage ID22] [DNA maturase, phage-associated] 33 | MRKFDLSLRGSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 34 | YESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS 35 | 36 | >fig|338112.2.peg.6 [Microvirus Enterobacteria phage ID22] [Phage capsid assembly] 37 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338112.2.peg.7 [Microvirus Enterobacteria phage ID22] [Phage endolysin] 43 | MVLWTLLDTLAFLLLLSLLLPSLLIMFIPSTFKRPASSWKALNLRKTLLM 44 | VSSVRLKPLNCSRLPCVYAQETLTFLLMQKKTCVKNYAQKE 45 | 46 | >fig|338112.2.peg.8 [Microvirus Enterobacteria phage ID22] [Phage protein] 47 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338112.2.peg.9 [Microvirus Enterobacteria phage ID22] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEKWIQFMKDGVNASPLPTVNT 52 | TRYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMADRTEANPN 53 | ELNEDDARYGFRCCHLKNIWTAPLPPETELSRLMTTSTTSIDIMGLQAAY 54 | ANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDASKKFKIAEGQ 57 | WYRYAPSYVSPAYHLLEGFPFIQEPPSGDLPERVLIRHHDYDQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 59 | 60 | >fig|338112.2.peg.10 [Microvirus Enterobacteria phage ID22] [Phage capsid and scaffold] 61 | MFQTFISRHNSNFFSDKLVSSSVTPASSAPVLQTPKAASSTLYFNELTVN 62 | AGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVP 63 | TTLPTTYDVYPLDGRHDGGCYTVKDCVTIDVLPRTPGNNVYVGFMVWSNF 64 | TATKCRGLVSLNQVIKEIICLQPLK 65 | 66 | >fig|338112.2.peg.11 [Microvirus Enterobacteria phage ID22] [Phage capsid and scaffold] 67 | MFGAIAGGIASALAGGAMSKLFGGGQKVASGGIQGDVLATDNNTVGMGDA 68 | GIKSAIQGSNVPNPDEAAPNFVSGAMAKAGKGLLEGTLQAGTSAVSGKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSAGMDDAGFEN 70 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | ITRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/338113.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338113.2.peg.1 [Microvirus Enterobacteria phage ID34] [A protein] 2 | MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLAFHKQMDNR 3 | IKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQ 4 | CYNVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRD 5 | EYNYPKKKGIKDECSRLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVF 6 | DTLTLADDRLESFYDNPNALRDYFRDIGRMVLAAEGRKANDSHADCYQYF 7 | CVPEYGSANGRLHFHAVHFMRTLPTGSVDPNFGRRVRNRRQLNSLQNTWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMRLRLAKVTVADVLAAQPVTI 11 | NLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338113.2.peg.2 [Microvirus Enterobacteria phage ID34] [A protein] 15 | MKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLESFYDNPNALRD 16 | YFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGSANGRLHFHAVHFMRT 17 | LPTGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMTNLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMRLRLAKVTVADVLAAQPVTINLLKFMRASIKMIGVSNLQSFI 21 | ASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK 22 | 23 | >fig|338113.2.peg.3 [Microvirus Enterobacteria phage ID34] [Phage capsid assembly] 24 | MEQLTKNQAVATSQEIIQNPNEPQLRDENAHNDQPVNGMLNPAYQAGLRR 25 | DAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWR 26 | VQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338113.2.peg.4 [Microvirus Enterobacteria phage ID34] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLCDLSPST 30 | NDSVKN 31 | 32 | >fig|338113.2.peg.5 [Microvirus Enterobacteria phage ID34] [DNA maturase, phage-associated] 33 | MRKFDLSLRNSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 34 | YESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS 35 | 36 | >fig|338113.2.peg.6 [Microvirus Enterobacteria phage ID34] [Phage capsid assembly] 37 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338113.2.peg.7 [Microvirus Enterobacteria phage ID34] [Phage endolysin] 43 | MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALSLRKTLLM 44 | ASSVRLRPLNCSRLPCVYAQETLMFLLTQKRTSVKNYAQKE 45 | 46 | >fig|338113.2.peg.8 [Microvirus Enterobacteria phage ID34] [Phage protein] 47 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338113.2.peg.9 [Microvirus Enterobacteria phage ID34] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNAAPLPTVNT 52 | TGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPN 53 | QLNEDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAY 54 | ANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDASKKFKIAEGQ 57 | WYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 59 | 60 | >fig|338113.2.peg.10 [Microvirus Enterobacteria phage ID34] [Phage capsid and scaffold] 61 | MFQTFISRHNSNFFSDKLVATSVTPASLAPVLQTPKATSSTLFFDSLTIN 62 | AGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESASVP 63 | TTLPTAYDVYPLDGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNF 64 | TATKCRGLVSLNQVIKEIICLQPLK 65 | 66 | >fig|338113.2.peg.11 [Microvirus Enterobacteria phage ID34] [Phage capsid and scaffold] 67 | MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDA 68 | GIKSAIQGSNVPNPDEAAPNFVSGAMAKAGKGLLEGTLQAGTSAVSDKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSAGMVDAGFEN 70 | QKELTKMQLDNQKEIAEMQNEAQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | MTRKVSAEVDLVHQQTQNQRYGSSQIGATAKDISNVVTDAASGVVDIFHG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/338114.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338114.2.peg.1 [Microvirus Enterobacteria phage ID45] [A protein] 2 | MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFYKQMDNR 3 | IKLLEEILSFRMRGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQ 4 | CYNVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRD 5 | EYDYPKKKGIKDECSRLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVF 6 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKVNGSHADCYQYF 7 | CVPEYGTANGRLHFHAVHFMRTLPSGSVDPNFGRRVRNRRQLNSLQNTWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTT 11 | NLLKFMRASIKMIGVSNLQNFIASMTQKLTLSDISDESKNYLDKAGITTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338114.2.peg.2 [Microvirus Enterobacteria phage ID45] [A protein] 15 | MKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD 16 | YFRDIGRMVLAAEGRKVNGSHADCYQYFCVPEYGTANGRLHFHAVHFMRT 17 | LPSGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMTNLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMRLRLGKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQNFI 21 | ASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK 22 | 23 | >fig|338114.2.peg.3 [Microvirus Enterobacteria phage ID45] [Phage capsid assembly] 24 | MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGMLNPTYQAGLRR 25 | DAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWR 26 | IQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338114.2.peg.4 [Microvirus Enterobacteria phage ID45] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLCDLSPST 30 | NDSVKN 31 | 32 | >fig|338114.2.peg.5 [Microvirus Enterobacteria phage ID45] [DNA maturase, phage-associated] 33 | MRKFDLSLRNSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 34 | YESHFVHGRDSLVDILKERGLLSDSDAVQPLIGKKS 35 | 36 | >fig|338114.2.peg.6 [Microvirus Enterobacteria phage ID45] [Phage capsid assembly] 37 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338114.2.peg.7 [Microvirus Enterobacteria phage ID45] [Phage endolysin] 43 | MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALSLRKTLLM 44 | ASSVRLRPLNCSRLPCVYAQETLTFLLTQKRMSAKNYAQKE 45 | 46 | >fig|338114.2.peg.8 [Microvirus Enterobacteria phage ID45] [Phage protein] 47 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338114.2.peg.9 [Microvirus Enterobacteria phage ID45] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNT 52 | TGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPN 53 | ELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAY 54 | ANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDSSKKFKIAEGQ 57 | WYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHHYDQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 59 | 60 | >fig|338114.2.peg.10 [Microvirus Enterobacteria phage ID45] [Phage capsid and scaffold] 61 | MFQTFISRHNSNFFSDKLVASSVTPASLAPVLQTPKATSSTLYFDSLTIN 62 | AGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVP 63 | TTLPAVYDVYPLDGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNF 64 | TATKCRGLVSLNQVIKEIICLQPLK 65 | 66 | >fig|338114.2.peg.11 [Microvirus Enterobacteria phage ID45] [Phage capsid and scaffold] 67 | MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDA 68 | GIKSAIQGSNVPNPDEAAPNFVSGAMAKAGKGLLEGTLQAGTSAVSDKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSAGMVDAGFEN 70 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | MTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/338115.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338115.2.peg.1 [Microvirus Enterobacteria phage NC1] [A protein] 2 | MVRSYYPSECHADYFDFERIEALKPAIEACGISNLSQSPMLAFHKQMENR 3 | IKLLEEILSFRMQGVEFDNGDMYVDGHKVASDVRDEFVSVTEKLMDELAQ 4 | SYNVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRD 5 | EYNYPKKKGIKDECSRLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVF 6 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKANDSHADCYQYF 7 | CVPEYGTANGRLHFHAVHFMRTLPTGSVDPNFGRRVRNRRQLNSLQNTWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTDL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMRLRLAKVTVADVLAAQPVTT 11 | NLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338115.2.peg.2 [Microvirus Enterobacteria phage NC1] [A protein] 15 | MKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD 16 | YFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRT 17 | LPTGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMTDLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMRLRLAKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQSFI 21 | ASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK 22 | 23 | >fig|338115.2.peg.3 [Microvirus Enterobacteria phage NC1] [Phage capsid assembly] 24 | MEQLTKNQAVATSQEIIQNSNEPQLRDENAHNDRPVNGMLNPAYQAGLRR 25 | DAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWR 26 | IQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338115.2.peg.4 [Microvirus Enterobacteria phage NC1] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLCDLSPST 30 | NDSVKN 31 | 32 | >fig|338115.2.peg.5 [Microvirus Enterobacteria phage NC1] [DNA maturase, phage-associated] 33 | MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 34 | YESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS 35 | 36 | >fig|338115.2.peg.6 [Microvirus Enterobacteria phage NC1] [Phage capsid assembly] 37 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338115.2.peg.7 [Microvirus Enterobacteria phage NC1] [Phage endolysin] 43 | MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALSLRKTLLM 44 | ASSVRLRPLSCSRLPCVYAQETLMFLLTQKRTSAKNYAQKE 45 | 46 | >fig|338115.2.peg.8 [Microvirus Enterobacteria phage NC1] [Phage protein] 47 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338115.2.peg.9 [Microvirus Enterobacteria phage NC1] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVDT 52 | TGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPN 53 | QLNQDDARYGFRCCHLKNIWTAPLPPETKLSCQMTTSTTSIDIMGLQAAY 54 | ANLHTDQEREYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDSSKKFKIAEGQ 57 | WYRYAPSYVSPAYHLLEGFPFIHEPPSGDLQERVLIRHHDYDQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 59 | 60 | >fig|338115.2.peg.10 [Microvirus Enterobacteria phage NC1] [Phage capsid and scaffold] 61 | MFQTFISCHNSNFFSDKLVASSVIPASLAPVLQTPKATSSTLYFDSLTVN 62 | AGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVP 63 | TTLPNAYDVYPLDGRHNGGYYTVKDCVTIDVLPRTSGNNVYVGFMVWSNF 64 | TATKCRGLVSLNQVIKEIICLQPLK 65 | 66 | >fig|338115.2.peg.11 [Microvirus Enterobacteria phage NC1] [Phage capsid and scaffold] 67 | MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDA 68 | GIKSAIQGSNVPNPDEAAPNFVSGAIAKAGKGLLEGTLQAGTSAVSDKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSAGMVDAGFEN 70 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | MTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/338116.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338116.2.peg.1 [Microvirus Enterobacteria phage NC5] [A protein] 2 | MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFHKQMDNR 3 | IKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQ 4 | CYNVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLPAERPLKDIRD 5 | EYNYPKKKGIKDECSRLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVF 6 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLDAEGRKANDSHADCYQYF 7 | CVPEYGTANGRLHFHAVHFMRTLPSGSVDPNFGRRVRNRRQLNSLQNTWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTT 11 | NLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338116.2.peg.2 [Microvirus Enterobacteria phage NC5] [A protein] 15 | MKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD 16 | YFRDIGRMVLDAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRT 17 | LPSGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMTNLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMRLRLGKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQSFI 21 | ASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK 22 | 23 | >fig|338116.2.peg.3 [Microvirus Enterobacteria phage NC5] [Phage capsid assembly] 24 | MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGMLNPTYQAGLRR 25 | DAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWR 26 | IQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338116.2.peg.4 [Microvirus Enterobacteria phage NC5] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLCDLSPST 30 | NDSVKN 31 | 32 | >fig|338116.2.peg.5 [Microvirus Enterobacteria phage NC5] [DNA maturase, phage-associated] 33 | MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 34 | YESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS 35 | 36 | >fig|338116.2.peg.6 [Microvirus Enterobacteria phage NC5] [Phage capsid assembly] 37 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338116.2.peg.7 [Microvirus Enterobacteria phage NC5] [Phage endolysin] 43 | MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPASSWKALSLRKTLLM 44 | ASSVRLRPLNCSRLPCVYAQETLMFLLTQKRMSAKNYAQKE 45 | 46 | >fig|338116.2.peg.8 [Microvirus Enterobacteria phage NC5] [Phage protein] 47 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338116.2.peg.9 [Microvirus Enterobacteria phage NC5] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNT 52 | TGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTDANPN 53 | ELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAY 54 | ANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGHASKKFKIAEGQ 57 | WYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 59 | 60 | >fig|338116.2.peg.10 [Microvirus Enterobacteria phage NC5] [Phage capsid and scaffold] 61 | MFQTFISRHNSNFFSDKLVATSVTPASLAPVLQTPKATSSTLFFDSLTIN 62 | AGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESASVP 63 | TTLPTAYDVYPLDGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNF 64 | TATKCRGLVSLNQVIKEIICLQPLK 65 | 66 | >fig|338116.2.peg.11 [Microvirus Enterobacteria phage NC5] [Phage capsid and scaffold] 67 | MFDAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDA 68 | GIKSAIQGSNVPNPDEAAPNFVSGAMAKAGKGLLEGTLQAGTSAVSDKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSAGMVDAGFEN 70 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | MTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFYG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/338117.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338117.2.peg.1 [Microvirus Enterobacteria phage NC7] [A protein] 2 | MVRSYYPSECHADYFDFERIEALKPAIEACGISNLSQSPMLAFHKQMENR 3 | IKLLEEILSFRMQGVEFDNGDMYVDGHKVASDVRDEFVSVTEKLMDELAQ 4 | SYNVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRD 5 | EYNYPKKKGIKDECSRLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVF 6 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKANDSHADCYQYF 7 | CVPEYGTANGRLHFHAVHFMRTLPTGSVDPNFGRRVRNRRQLNSLQNTWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTDL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMRLRLAKVTVADVLAAQPVTT 11 | NLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338117.2.peg.2 [Microvirus Enterobacteria phage NC7] [A protein] 15 | MKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD 16 | YFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRT 17 | LPTGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMTDLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMRLRLAKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQSFI 21 | ASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK 22 | 23 | >fig|338117.2.peg.3 [Microvirus Enterobacteria phage NC7] [Phage capsid assembly] 24 | MEQLTKNQAVATSQEIIQNSNEPQLRDENAHNDRPVNGMLNPAYQAGLRR 25 | DAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWR 26 | IQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338117.2.peg.4 [Microvirus Enterobacteria phage NC7] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLERLLLCDLSPST 30 | NDSVKN 31 | 32 | >fig|338117.2.peg.5 [Microvirus Enterobacteria phage NC7] [DNA maturase, phage-associated] 33 | MRKFDLSLRSSRGSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 34 | YESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS 35 | 36 | >fig|338117.2.peg.6 [Microvirus Enterobacteria phage NC7] [Phage capsid assembly] 37 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338117.2.peg.7 [Microvirus Enterobacteria phage NC7] [Phage endolysin] 43 | MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALSLRKTLLM 44 | ASSVRLRPLSCSRLPCVYAQETLMFLLTQKRTSAKNYAQKE 45 | 46 | >fig|338117.2.peg.8 [Microvirus Enterobacteria phage NC7] [Phage protein] 47 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338117.2.peg.9 [Microvirus Enterobacteria phage NC7] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVDT 52 | TGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPN 53 | QLNQDDARYGFRCCHLKNIWTAPLPPETKLSCQMTTSTTSIDIMGLQAAY 54 | ANLHTDQEREYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDSSKKFKIAEGQ 57 | WYRYAPSYVSPAYHLLEGFPFIHEPPSGDLQERVLIRHHDYDQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 59 | 60 | >fig|338117.2.peg.10 [Microvirus Enterobacteria phage NC7] [Phage capsid and scaffold] 61 | MFQTFISCHNSNFFSDKLVASSVIPASLAPVLQTPKATSSTLYFDSLTVN 62 | AGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVP 63 | TTLPNAYDVYPLDGRHNGGYYTVKGCVTIDVLPRTSGNNVYVGFMVWSNF 64 | TATKCRGLVSLNQVIKEIICLQPLK 65 | 66 | >fig|338117.2.peg.11 [Microvirus Enterobacteria phage NC7] [Phage capsid and scaffold] 67 | MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDA 68 | GIKSAIQGSNVPNPDEAAPNFVSGAIAKAGKGLLEGTLQAGTSAVSDKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASCAGMVDAGFEN 70 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | MTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/338118.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338118.2.peg.1 [Microvirus Enterobacteria phage NC11] [A protein] 2 | MVRSYYPSECHADYFDFERIEALKPAIAACGISTLSQSPMLAFHKQMDNR 3 | IKLLEEILSFRMRGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQ 4 | CYNVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRD 5 | EYNYPKKKGIKDECSRLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVF 6 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKANDSHADCYQYF 7 | CVPEYGSANGRLHFHAVHFMRTLPTGSIDPNFGRRVRNRRQLNSLQNTWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMSNL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMRLRLAKVTVADVLAAQPVTT 11 | NLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338118.2.peg.2 [Microvirus Enterobacteria phage NC11] [A protein] 15 | MKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD 16 | YFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGSANGRLHFHAVHFMRT 17 | LPTGSIDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMSNLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMRLRLAKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQSFI 21 | ASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK 22 | 23 | >fig|338118.2.peg.3 [Microvirus Enterobacteria phage NC11] [Phage capsid assembly] 24 | MEQLTKNQAVATSQEIIQNPNEPQLRDENAHNVQPVNGMLNPAYQAGLRR 25 | DAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWR 26 | VQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338118.2.peg.4 [Microvirus Enterobacteria phage NC11] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRLILAQLEKLLLCDLSPST 30 | NDSVKN 31 | 32 | >fig|338118.2.peg.5 [Microvirus Enterobacteria phage NC11] [DNA maturase, phage-associated] 33 | MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 34 | YESHFVHGRDSLVDILKERGLLSESDVVQPLIGKKS 35 | 36 | >fig|338118.2.peg.6 [Microvirus Enterobacteria phage NC11] [Phage capsid assembly] 37 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338118.2.peg.7 [Microvirus Enterobacteria phage NC11] [Phage endolysin] 43 | MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALSLRKTLLM 44 | ASSVRLRPLNCSRLPCVYAQETLTFLLMQKRTSAKNYAQKE 45 | 46 | >fig|338118.2.peg.8 [Microvirus Enterobacteria phage NC11] [Phage protein] 47 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338118.2.peg.9 [Microvirus Enterobacteria phage NC11] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAQRMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNANPLPTVNT 52 | TGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPN 53 | QLNEDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAY 54 | ANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDASKKFKIAEGQ 57 | WYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 59 | 60 | >fig|338118.2.peg.10 [Microvirus Enterobacteria phage NC11] [Phage capsid and scaffold] 61 | MFQTFISRHNSNFFSDKLVATSVTPASLAPVLQTPKATSSTLFFDSLTIN 62 | AGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESASVP 63 | TTLPTAYDVYPLDGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNF 64 | TATKCRGLVSLNQVIKEIICLQPLK 65 | 66 | >fig|338118.2.peg.11 [Microvirus Enterobacteria phage NC11] [Phage capsid and scaffold] 67 | MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNIVGMGDA 68 | GIRSAIQGSNVPNPDEAAPNFVSGAMAKAGKGLLEGTLQAGTSAVSDKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSAGMVDAGFEN 70 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | MTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/338119.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338119.2.peg.1 [Microvirus Enterobacteria phage NC16] [A protein] 2 | MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFHKQMDNR 3 | IKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQ 4 | CYNVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRD 5 | EYNYPKKKGIKDECSRLLEASTMKSRRGFTIQRLMNAMRQAHAVGWFIVF 6 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKANDSHAYCYQYF 7 | CVPEYGTANGRLHFHAVHFMRTLPSGSVDPNFGRRVRNRRQLNSLQNTWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTT 11 | NLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338119.2.peg.2 [Microvirus Enterobacteria phage NC16] [A protein] 15 | MKSRRGFTIQRLMNAMRQAHAVGWFIVFDTLTLADDRLEAFYDNPNALRD 16 | YFRDIGRMVLAAEGRKANDSHAYCYQYFCVPEYGTANGRLHFHAVHFMRT 17 | LPSGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMTNLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMRLRLGKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQSFI 21 | ASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK 22 | 23 | >fig|338119.2.peg.3 [Microvirus Enterobacteria phage NC16] [Phage capsid assembly] 24 | MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGMLNPTYQAGLRR 25 | DAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWR 26 | IQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338119.2.peg.4 [Microvirus Enterobacteria phage NC16] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLCDLSPST 30 | NDSVKN 31 | 32 | >fig|338119.2.peg.5 [Microvirus Enterobacteria phage NC16] [DNA maturase, phage-associated] 33 | MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFFKDWFR 34 | YESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS 35 | 36 | >fig|338119.2.peg.6 [Microvirus Enterobacteria phage NC16] [Phage capsid assembly] 37 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338119.2.peg.7 [Microvirus Enterobacteria phage NC16] [Phage endolysin] 43 | MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPASSWKALSLRKTLLM 44 | ASSVRLRPLNCSRLPCVYAQETLMFLLTQKRMSAKNYAQKE 45 | 46 | >fig|338119.2.peg.8 [Microvirus Enterobacteria phage NC16] [Phage protein] 47 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338119.2.peg.9 [Microvirus Enterobacteria phage NC16] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNT 52 | TRYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPN 53 | QLNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAY 54 | ANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDASKKFKIAEGQ 57 | WYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 59 | 60 | >fig|338119.2.peg.10 [Microvirus Enterobacteria phage NC16] [Phage capsid and scaffold] 61 | MFQTFISRHNSNFFSDKLVATSVTPASLAPVLQTPKATSSTLFFDSLTIN 62 | AGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESASVP 63 | TTLPTAYDVYPLDGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNF 64 | TATKCRGLVSLNQVIKEIICLQPLK 65 | 66 | >fig|338119.2.peg.11 [Microvirus Enterobacteria phage NC16] [Phage capsid and scaffold] 67 | MFDAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDA 68 | GIKSAIQGSNVPNPDEAAPNFVSGAMAKAGKGLLEGTLQAGTSAVSDKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSAGMVDAGFEN 70 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | MTRKVSAEVDLVHQQTQNQRYGSSLIGATAKDISNVVTDAASGVVDIFYG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/338120.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338120.2.peg.1 [Microvirus Enterobacteria phage NC37] [A protein] 2 | MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFHKQMDNR 3 | IKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQ 4 | CYNVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRD 5 | EYNYPKKKGIKDECSRLLEASTMNSRRGFTIQRLMNAMRQAHADGWFIVF 6 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKANDSHADCYQYF 7 | CVPEYGTANGRLHFHAVHFMRTLPSGSVDPNFGRRVRNRRQLNSLQNTWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTT 11 | NLLKFMRASIKMIGVSNLQSFIASMTQKLILSDISDESKNYLDKAGITTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338120.2.peg.2 [Microvirus Enterobacteria phage NC37] [A protein] 15 | MNSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD 16 | YFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRT 17 | LPSGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMTNLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMRLRLGKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQSFI 21 | ASMTQKLILSDISDESKNYLDKAGITTACLRIKSKWTAGGK 22 | 23 | >fig|338120.2.peg.3 [Microvirus Enterobacteria phage NC37] [Phage capsid assembly] 24 | MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGMLNPTYQAGLRR 25 | DAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWR 26 | IQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338120.2.peg.4 [Microvirus Enterobacteria phage NC37] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENETIRPILAQLEKLLLCDLSPST 30 | NDSVKN 31 | 32 | >fig|338120.2.peg.5 [Microvirus Enterobacteria phage NC37] [DNA maturase, phage-associated] 33 | MRQFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 34 | YESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS 35 | 36 | >fig|338120.2.peg.6 [Microvirus Enterobacteria phage NC37] [Phage capsid assembly] 37 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338120.2.peg.7 [Microvirus Enterobacteria phage NC37] [Phage endolysin] 43 | MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPASSWKALSLRKTLLM 44 | ASSVRLRPLNCSRLPCVYAQETLMFLLTQKRMSAKNYAQKE 45 | 46 | >fig|338120.2.peg.8 [Microvirus Enterobacteria phage NC37] [Phage protein] 47 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338120.2.peg.9 [Microvirus Enterobacteria phage NC37] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNT 52 | TRYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPN 53 | QLNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAY 54 | ANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDASKKFKIAEGQ 57 | WYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTSRDSIMTS 59 | 60 | >fig|338120.2.peg.10 [Microvirus Enterobacteria phage NC37] [Phage capsid and scaffold] 61 | MFQTFISRHNSNFFSDKLVATSVTPASLAPVLQTPKATSSTLFFDSLTIN 62 | AGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESASVP 63 | TTLPTAYDVYPLDGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNF 64 | TATKCRGLVSLNQVIKEIICLQPLK 65 | 66 | >fig|338120.2.peg.11 [Microvirus Enterobacteria phage NC37] [Phage capsid and scaffold] 67 | MFDAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDA 68 | GIKSAIQGSNVPNPDEAAPNFVSGAMAKAGKGLLEGTLQAGTSAVSDKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSAGMVDAGFEN 70 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | MTRKVSAEVDLVHQQTQNQRYGSSLIGATAKDISNVVTDAASGVVDIFYG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/338121.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338121.2.peg.1 [Microvirus Enterobacteria phage NC41] [A protein] 2 | MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFHKQMDNR 3 | IKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQ 4 | CYNVLPQLDINNTIDHRPEGDGKWFLENEKTVTQFCRKLAAERPLKDIRD 5 | EYNYPKKKGIKDECSRLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVF 6 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKANDSHADCYQYF 7 | CVPEYGTANGRLHFHAVHFMRTLPSGSVDPNFGRRVRNRRQLNSLQNTWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTT 11 | NLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338121.2.peg.2 [Microvirus Enterobacteria phage NC41] [A protein] 15 | MKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD 16 | YFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRT 17 | LPSGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMTNLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMRLRLGKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQSFI 21 | ASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK 22 | 23 | >fig|338121.2.peg.3 [Microvirus Enterobacteria phage NC41] [Phage capsid assembly] 24 | MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGMLNPTYQAGLRR 25 | DAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWR 26 | IQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338121.2.peg.4 [Microvirus Enterobacteria phage NC41] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLCDLSPST 30 | NDSVKN 31 | 32 | >fig|338121.2.peg.5 [Microvirus Enterobacteria phage NC41] [DNA maturase, phage-associated] 33 | MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 34 | YESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKL 35 | 36 | >fig|338121.2.peg.6 [Microvirus Enterobacteria phage NC41] [Phage capsid assembly] 37 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338121.2.peg.7 [Microvirus Enterobacteria phage NC41] [Phage endolysin] 43 | MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPASSWKALSLRKTLLM 44 | ASSVRLRPLNCSRLPCVYAQETLTFLLTQKRMSAKNYAQKE 45 | 46 | >fig|338121.2.peg.8 [Microvirus Enterobacteria phage NC41] [Phage protein] 47 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338121.2.peg.9 [Microvirus Enterobacteria phage NC41] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNT 52 | TGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPN 53 | ELNEDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAY 54 | ANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDASKKFKIAEGQ 57 | WYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 59 | 60 | >fig|338121.2.peg.10 [Microvirus Enterobacteria phage NC41] [Phage capsid and scaffold] 61 | MFQTFISRHNSNFFSDKLVATSVTPASLAPVLQTPKATSSTLFFDSLTIN 62 | VGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESASVP 63 | TTLPTAYDVYPLDGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNF 64 | TATKCRGLVSLNQVIKEIICLQPLK 65 | 66 | >fig|338121.2.peg.11 [Microvirus Enterobacteria phage NC41] [Phage capsid and scaffold] 67 | MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDA 68 | GIKSAIQGSNVPNPDEAAPNFVSGAMAKAGKGLLEGTLQAGTSAVSDKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGSGASSAGMVDAGFEN 70 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | MTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/338122.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338122.2.peg.1 [Microvirus Enterobacteria phage NC51] [A protein] 2 | MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFHKQMDNR 3 | IKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQ 4 | CYNVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRD 5 | EYNYPKKKGIKDECSRLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVF 6 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKANDSHADCYQYF 7 | CVPEYGTTNGRLHFHAVHFMRTLPTGSVDPNFGRRVRNRRQLNSLQNTWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTT 11 | NLLKFMRASIKMIGVSNLQNFIASMTQKLTLSDISDESKNYLDKAGITTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338122.2.peg.2 [Microvirus Enterobacteria phage NC51] [A protein] 15 | MKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD 16 | YFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTTNGRLHFHAVHFMRT 17 | LPTGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMTNLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMRLRLGKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQNFI 21 | ASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK 22 | 23 | >fig|338122.2.peg.3 [Microvirus Enterobacteria phage NC51] [Phage capsid assembly] 24 | MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGMLNPTYQAGLRR 25 | DAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWR 26 | IQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338122.2.peg.4 [Microvirus Enterobacteria phage NC51] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLCDLSPST 30 | NDSVKN 31 | 32 | >fig|338122.2.peg.5 [Microvirus Enterobacteria phage NC51] [DNA maturase, phage-associated] 33 | MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 34 | YESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS 35 | 36 | >fig|338122.2.peg.6 [Microvirus Enterobacteria phage NC51] [Phage capsid assembly] 37 | MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338122.2.peg.7 [Microvirus Enterobacteria phage NC51] [Phage endolysin] 43 | MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALNLRKTLLM 44 | ASSVRLKPLNCSRLPCVYAQETLTFLLTQKKTCVKNYVQKE 45 | 46 | >fig|338122.2.peg.8 [Microvirus Enterobacteria phage NC51] [Phage protein] 47 | MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338122.2.peg.9 [Microvirus Enterobacteria phage NC51] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNASPLPTVNT 52 | TGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPN 53 | ELNEDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAY 54 | ANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDSSKKFKIAEGQ 57 | WYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 59 | 60 | >fig|338122.2.peg.10 [Microvirus Enterobacteria phage NC51] [Phage capsid and scaffold] 61 | MFQTFISRHNSNFFSDKLVASSVTPASLAPVLQTPKATSSTLYFDSLTVN 62 | AGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESTSVP 63 | TTLPTAYDVYPLDGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNF 64 | TATKCRGLVSLNQVIKEIICLQPLK 65 | 66 | >fig|338122.2.peg.11 [Microvirus Enterobacteria phage NC51] [Phage capsid and scaffold] 67 | MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDA 68 | GIKSAIQGSNVPNPDEAAPNFVSGAMAKAGKGLLEGTLQAGTSAVSDKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSAGMVDAGFEN 70 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | MTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/338124.2.fas: -------------------------------------------------------------------------------- 1 | >fig|338124.2.peg.1 [Microvirus Enterobacteria phage WA4] [A protein] 2 | MVRSYYPSECHADYFDFERIEALKPAVEACGISTLSQSPMLAFHKQMENR 3 | IKLLEEILSFRMQGVEFDNGDMYVDGYKAASDVRDEFVSVTEKLMDELAQ 4 | CYNVLPQLDINNTIDHRPEGDEKWFLENDKTVTQFCRKLAAERPLKDIRD 5 | EYNYPKKKGIKDECSRLLEASTMKSRRGFTIQRLMNAMRQAHTDGWFIVF 6 | DTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAAEGRKANASHADCYQYF 7 | CVPEYGSANGRLHFHAVHFMRTLPTGSVDPNFGRRVRNRRQLNSLQNMWP 8 | YGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNK 9 | KSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNL 10 | SMECLIQLTKLGYDATPFNQILKQNAKREMRLRLAKVTVADVLAAQPVTT 11 | NLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGVTTA 12 | CLRIKSKWTAGGK 13 | 14 | >fig|338124.2.peg.2 [Microvirus Enterobacteria phage WA4] [A protein] 15 | MKSRRGFTIQRLMNAMRQAHTDGWFIVFDTLTLADDRLEAFYDNPNALRD 16 | YFRDIGRMVLAAEGRKANASHADCYQYFCVPEYGSANGRLHFHAVHFMRT 17 | LPTGSVDPNFGRRVRNRRQLNSLQNMWPYGYSMPIAVRYTQDAFSRSGWL 18 | WPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKT 19 | KLSLLPKKLFRIRMSRNFGMKMLTMTNLSMECLIQLTKLGYDATPFNQIL 20 | KQNAKREMRLRLAKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQSFI 21 | ASMTQKLTLSDISDESKNYLDKAGVTTACLRIKSKWTAGGK 22 | 23 | >fig|338124.2.peg.3 [Microvirus Enterobacteria phage WA4] [Phage capsid assembly] 24 | MEQLTKNQAVATTQEIIQNPNEPQLRNENAHNDQSVNGMLDPAYQAGLRR 25 | DAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWR 26 | VQPAEFYRFHDAEVNTFGYF 27 | 28 | >fig|338124.2.peg.4 [Microvirus Enterobacteria phage WA4] [Phage protein] 29 | MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLCDLSPST 30 | NDSVKN 31 | 32 | >fig|338124.2.peg.5 [Microvirus Enterobacteria phage WA4] [DNA maturase, phage-associated] 33 | MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFR 34 | YESHFVHGRDSLVDILKERGLLSESDVVQPLIGKKS 35 | 36 | >fig|338124.2.peg.6 [Microvirus Enterobacteria phage WA4] [Phage capsid assembly] 37 | MSQITEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSR 38 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 39 | AEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEG 40 | VM 41 | 42 | >fig|338124.2.peg.7 [Microvirus Enterobacteria phage WA4] [Phage endolysin] 43 | MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPASSWKALSLRKTLLM 44 | ASSVRLRPLSCSRLPCVYAQETLTFLLTQKRTFAKNYAQKE 45 | 46 | >fig|338124.2.peg.8 [Microvirus Enterobacteria phage WA4] [Phage protein] 47 | MSKGKKRSGALPGRPQPLRGTKGKRKGARLWYVGGQQF 48 | 49 | >fig|338124.2.peg.9 [Microvirus Enterobacteria phage WA4] [Phage major capsid protein #Fam0055] 50 | MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGAL 51 | RLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNASPLPTVNT 52 | TGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMADRTEANPN 53 | ALNEDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAY 54 | ANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNFWASGYDV 55 | DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI 56 | QYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDSSKKFKIAEGQ 57 | WYRYAPSYVSPVYHLLEGFPFIQEPPSGDLQERVLIRHHDYNQCFQSVQL 58 | LQWNSQVKFNVTVYRNLPTTRDSIMTS 59 | 60 | >fig|338124.2.peg.10 [Microvirus Enterobacteria phage WA4] [Phage capsid and scaffold] 61 | MFQTFISRHNSNFFSDKLVAASVTPASLAPVLQTPKATSSTLYFNELTVN 62 | AGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVP 63 | ITLPTAYDVYPLDGRHNGGYYSVKDCVTIDVLPRTSGNNVYVGFMVWSNF 64 | TATKCRGLVSLNQVIKEIICLQPLK 65 | 66 | >fig|338124.2.peg.11 [Microvirus Enterobacteria phage WA4] [Phage capsid and scaffold] 67 | MFGAIAGGIASALAGGVMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDA 68 | GIKSAIQGSNVPNPDEAAPNFVSGAMAKAGKGLLEGTLQAGTSAVSDKLL 69 | DLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSAGMVDAGFEN 70 | QKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLA 71 | YQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKE 72 | MTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHG 73 | IDKAVADTWNNFWKDGKADGIGSNLSRK 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/384360.2.fas: -------------------------------------------------------------------------------- 1 | >fig|384360.2.peg.1 [Inovirus Ralstonia phage RSS1] [hypothetical protein] 2 | MTRYVHTGPPTYKHPLSCKPAFETLTIFGCAGCGGSLRVPMLRCSEQPKS 3 | AVSDDELKAVAREIRHLYWHIRTLRRGYQDAARHRYYRKIRTKKKRLLEY 4 | NRLTRARGK 5 | 6 | >fig|384360.2.peg.2 [Inovirus Ralstonia phage RSS1] [hypothetical protein] 7 | MQQRDHRQLDLIGDVLHPHGAQLAIVMAAVLRGACCLQSRPAMHRIDDLL 8 | KNSRQAELANWYRREGAR 9 | 10 | >fig|384360.2.peg.3 [Inovirus Ralstonia phage RSS1] [rolling circle replication protein, phage related] 11 | MRVRPTPSRHLDRTGIAYGVHGPALARENGMAADRAERSEAGRPTGRSPG 12 | PVKPGESPERKAGAIVDWFKFTFLPDGSISDALEQLRKYFHLVFSVPVTM 13 | KPAGKGFRRYEFSYDLLAFINGETMKLGIVACGGEHVGGTILVDWPGQGC 14 | TAIGDWQAVYAMVQDLDARITRCDLAMDFCQGEVSIAQMEELYYAGDFNA 15 | GGRIPTYRKIESGVAGSKGCRGTTFEIGRRANGKMLRAYEKGRQLGNQDS 16 | EWVRLEIEFGAKDRVIPHEILIKRDQYFAGAYKALEAFMAADPQRVPTDQ 17 | VKALELQDETIRERKLKHIQTQFGPTVDYELRCTEEDIAALVVAIRRQGV 18 | PAQLHKSALARHVYGTHDPVPKPEE 19 | 20 | >fig|384360.2.peg.4 [Inovirus Ralstonia phage RSS1] [hypothetical protein] 21 | MEMIARVTIRGAKTWVGNMDGKQLDTGKIYTDVELRGEDSKGTCTQELKC 22 | ESSAVVKAIIHNPFPFIAEVSMVETSNGKDKGGQKVVTSIKPLQRAEAEP 23 | KKA 24 | 25 | >fig|384360.2.peg.5 [Inovirus Ralstonia phage RSS1] [hypothetical protein] 26 | MRSLALGVERPGAFLNLHLKEKTMFKSIKSKAAAVAAGTVALAGSAMAAV 27 | PTDVATAMSDSKADTATLAGLALIIVIGIATFKYMRRSV 28 | 29 | >fig|384360.2.peg.6 [Inovirus Ralstonia phage RSS1] [hypothetical protein] 30 | MAADGALVGARCFADVGMATDAYYSAVAPSQTPGAVTYLSEFVKTTGGWV 31 | LRRYQVGSDGSVGTLTDASLPSLSFPACDPQESFKDGMTMGWGVVAAMVA 32 | AWALVVMKKGL 33 | 34 | >fig|384360.2.peg.7 [Inovirus Ralstonia phage RSS1] [hypothetical protein] 35 | MLAIDFWLWAGFLLPVLPAVIIFRGL 36 | 37 | >fig|384360.2.peg.8 [Inovirus Ralstonia phage RSS1] [hypothetical protein] 38 | MRVLVLLLCWWASSAWASTIPLIPPPNIVLTGTGYVTTGAVTLSEVATAT 39 | EMRAAVGAGAATIAATMTVGEGAAAVALAALRATPAIATATSLAYLAQLG 40 | IQKCLDGTWCTSKRSPAAGDTGFNGWGWTYGYNTSATGGNIANGVAASPG 41 | AACSAMLAADAYLAGQKAKFAGMKATGNGTSYECHYTNDGGDNFYAGTSQ 42 | ASSCVDGYVVSGSACVPDPAGPTVGASDADWNKGLTYPLPAGVASDMAAA 43 | KVPIPVKLTPSTTPVNVNLSDPYVDPVTGKRYRDVATVTPNSDGKTATLT 44 | TGKQEVDANGNPATDPATGNGKAPEKQDDQCSGHETRMGCIEQGEIPDGP 45 | DLKEQQVNVKVTPDSGWGADTAPCPSDLTASIHGMPISWSLKPVCDGADM 46 | FRPVIIACAWLGAALIVIGVGRKGEE 47 | 48 | >fig|384360.2.peg.9 [Inovirus Ralstonia phage RSS1] [hypothetical protein] 49 | MMPLAGFLMALVGPLARQLLVSLGIGLITYVGLDAAVSAALGAAKSSLAG 50 | MPAVAAAILARGGVFTGLSIIAGGITARISMITLKRLGKLT 51 | 52 | >fig|384360.2.peg.10 [Inovirus Ralstonia phage RSS1] [Phage protein] 53 | MSATQPITLITATPGGGKTALAVQMMKAAVDQGRPLFVMGIPELKLPYIP 54 | TPAVSDWTGVREDPENPGMMLPYFTFPPNSLIVLDEAQRVFRVRTAGSKV 55 | PDHVAAFETVRHTGVTFVLITQNPTFLDSHIRKLVGQHVHLRDAGLLGRW 56 | YYEWPECANPETFNTAPIKKKWSLPKSSFGLYKSSSLHIKRKYTVPPVLM 57 | LFIACVLIAAFLAYRVYYRTGQLTTATPAKPVAAEQGRGGVASAPAVAVK 58 | AGPSAAATDGAEILAAFVPAVSGRPETAPAYAQLRQIRSMPTVIGGACTS 59 | TRCTCYTAQGTDAGLDDMQCREWIRKPPFDPYREPQAAQEPISAQLAPAT 60 | AQPEKTAPKPAEGV 61 | 62 | >fig|384360.2.peg.11 [Inovirus Ralstonia phage RSS1] [Phage protein] 63 | MESSNREPNMRDVTDNVTVDLPGMEQKRGRGRPRKAHAMTNAERQAAFRA 64 | RRKAEQPSDRSVTVTKKVAEVDAYDDCQEQVDALRFELAETVQAHNQVVA 65 | QLDEVRREKDIAWRGMREQRDKAEELGREVLQLKKRLLQEKSVTPSNGNP 66 | VSFAAMVDLLSQAAKARSKSALLDIREGISWKDGVVGNTKVTDNQLAQLI 67 | AAMTRRQA 68 | 69 | >fig|384360.2.peg.12 [Inovirus Ralstonia phage RSS1] [hypothetical protein] 70 | MGTSYEVDVVAWAREQAALLRSGKLSDIDIRHIAEEIEDVGKSEQRELAS 71 | RMAVLLAHLLKWQYQPGRRGSSWQRTVKEQRRAILARLHRTPSLQPMLAD 72 | PDWKEEIWADAVSAAVDETGLDVFPEQWPWTPEQVLSPEFYPE 73 | 74 | -------------------------------------------------------------------------------- /old/genomes/39803.2.fas: -------------------------------------------------------------------------------- 1 | >fig|39803.2.peg.1 [Allolevivirus Enterobacteria phage Qbeta] [Phage maturase] 2 | MPRLPRALRFGPNMEVLSDFQELWYPESIIDSDVKYPLYTFRGSIGGSFF 3 | DSYGTNNIVREIRRTPHCATVPIASSGLRPCTSVWYDPTSLLFRIPEMRA 4 | EWDNGMGDAGDIVYKDFLFSTPAPKEFDFSNSLAPRYSNAFSAFNAKYGV 5 | IIGEGHETLKYFALLLRRLHKAVRAVRHGDLRGLRKILDSYNKGRWKPAT 6 | AGNLWLEFRYGLTPLFHDIKSVMDDWNRINDKIQKLRRFSVGHGEDFKLS 7 | IDGLYPGLTHFRLSGEITVQRRHRWGITYANREGYATFDNGSIRPVSDWK 8 | ELANAFINPGEVAWELTPYSFIVDWFINVGDIIEQQKQWYQNIDIVDGYQ 9 | RRDIRMRSVSLKGVRNGIPVRVTGSVELVDSFYNRSHTTRIPQATLAIDT 10 | SFSSIKHVMDSISLITQRIKR 11 | 12 | >fig|39803.2.peg.2 [Allolevivirus Enterobacteria phage Qbeta] [Phage capsid and scaffold] 13 | MAKLQAITLSGIGKNGDVTLNLNPRGVNPTNGVAALSEAGAVPALEKRVT 14 | ISVSQPSRNRKNYKVQVKIQNPTSCTASGTCDPSVTRSAYADVTFSFTQY 15 | STDEERALVRTELKALLADPMLIDAIDNLNPAYWTALLGDGSGPSPVPGP 16 | NPDPPLEPPPGTGSYTCPFRIWDLSSIYEAANSSHSWDIYNAVELSPRKF 17 | DVTLDDLLGNTDWRDWDGRLRYTTFRGSRGNGYIDLDATSLMQDEYLTSS 18 | KYLVREGKRPGAFGSIERFVYLKSINAYCSLSDITAYHSDGVVVGFWRDP 19 | SSGGAIPFDFSEFDSNKCPIQAVIVVPRL 20 | 21 | >fig|39803.2.peg.3 [Allolevivirus Enterobacteria phage Qbeta] [Phage capsid and scaffold] 22 | MAKLQAITLSGIGKNGDVTLNLNPRGVNPTNGVAALSEAGAVPALEKRVT 23 | ISVSQPSRNRKNYKVQVKIQNPTSCTASGTCDPSVTRSAYADVTFSFTQY 24 | STDEERALVRTELKALLADPMLIDAIDNLNPAY 25 | 26 | >fig|39803.2.peg.4 [Allolevivirus Enterobacteria phage Qbeta] [replicase] 27 | MSKTLQSRKSLSGKLRRAANTRIVVEGNLALSIANDLLSALDVEPFNSEE 28 | DCISRSPKFGISPDQFRNSYLRAEIMSKYDSFSLGINTEAVAWEKFLAAE 29 | AECAKTNLRLYRPNYNEDFNFSLGETCIHMARRKIVKLLGDSVPFEAVLR 30 | HCRFSGGATTTNSRLYGHPSFKFALAQECTPRAVPYVQALKACTNMDLGI 31 | TKVSPFNKAVTVPKNSKTDRCIAIEPGWNMFFQLGIGGVIREKLHLWNID 32 | LNDQTINQVRAYSGSCSNELATVDLSSASDTISLALVELLLPPAWFKVLT 33 | DLRSRRGMLPDGRIITYEKISSMGNGFTFELESLIFAALARSLCELLNLQ 34 | PSSVTVYGDDIILPSDACSSLIEVFSYVGFRTNEKKTFFDGPFRESCGKH 35 | YFMGVDVTPFYIRHRIVSPSDLILVLNQMYRWATIDGVWDPRVYPVYTKY 36 | RRLLPDILRRNVVPDGYGDGALVGSVLTSPFAENRGWVRRVPMIIDKKKD 37 | RVRDERGSYLYELWSLQQLECDSEFPFNGSLVVGTNDGVCTYRHRERVST 38 | AISDSVGAYDIVWIPCSSRVLAPYGDFRRHEGSILK 39 | 40 | -------------------------------------------------------------------------------- /old/genomes/39804.2.fas: -------------------------------------------------------------------------------- 1 | >fig|39804.2.peg.1 [Allolevivirus Enterobacteria phage FI] [Phage maturase] 2 | MPTLPIGLRFGSKGEILNDFSALWFPKRVSFDSQLGRYELSGYLNGQFSD 3 | YGRNPALQVSKTPHRATVPVNHLGYRPVTTVEYVPNGTFVRLDGTVRISG 4 | ELVNGTVRLDNYIVNLAAQGGFDYQSVIGPRFSSQFSAFSTKYGTLLGEG 5 | RETLSYLLLLFRRMREGFLAVKRGDLKRLRNVIRTFEPRSQAGKRQRSSF 6 | NKSYCDKLASGEWKNSSASNLWLEFRYGLMPLFYDIQSVMEDFMRVHKRI 7 | AKIQRFSAGHGKLEKVSDIFYPSTYFQLEVTAVLQRRHRWGVIYQDTDTF 8 | ATFDNGRLIPVRDWQTAALAFLNPAETAWELTPLSFVADWFVNVGDMLEQ 9 | IGQLYRYVDVVDGFDRKDVKLKSVSVRVIAPSADSATFELRRAELLHGFY 10 | SRVHTVAFPQISPQIDAEVRSVKHVIDSLALLTQRFKR 11 | 12 | >fig|39804.2.peg.2 [Allolevivirus Enterobacteria phage FI] [Phage capsid and scaffold] 13 | MAKLNTVTLTKLGKEANKTMTLTPRGVNPTNGVATLSEAGAVPALEKRVT 14 | VSVAQPSRNRKNFKVQIKLQNPTACTKDACDPSVTRSAFADLTLSFTSYS 15 | TDEERALIRTELAALLADPLITDAIDNLNPAYWAALLVSSSGGEVKPPIP 16 | DVPDVPSVKPPGGTGSFTCPFSCYRLDTIIEAGKDGVPDLYEQGPEVTVT 17 | FDYAVEDFLGNTNWRNWDSRLSNYDIGNLRRCRGNGYVDLDATAMQSDSY 18 | VLSGKYRVRKGLPPGIFASPRYYLELQDGAWVDLAAVTAYRSYGMVIGFW 19 | TDSKSPQIPNDFTRFDSTKCPVQTVIVIPSLD 20 | 21 | >fig|39804.2.peg.3 [Allolevivirus Enterobacteria phage FI] [Phage capsid and scaffold] 22 | MAKLNTVTLTKLGKEANKTMTLTPRGVNPTNGVATLSEAGAVPALEKRVT 23 | VSVAQPSRNRKNFKVQIKLQNPTACTKDACDPSVTRSAFADLTLSFTSYS 24 | TDEERALIRTELAALLADPLITDAIDNLNPAY 25 | 26 | >fig|39804.2.peg.4 [Allolevivirus Enterobacteria phage FI] [replicase] 27 | MSKTASRRREITHLLGKVDISFEDDIHLSIANDLFRAYGVGELSSAEECI 28 | NTAFPRLDQSPDTFRTEYLRSEILSKFNAHPLGIDTEAVAWEKFLAAEEG 29 | CRLTNARLSSCKYHDNSILSWGERVIHTARRKILKLIGESVPFGDVALRC 30 | RFSGGATTSVNRLHGHPSWKHACPQDVTKRALKYLLAYKKACGDTDELRI 31 | GEVRTSNKAVTVPKNSKTDRCIAIEPGWNMFFQLGVGAVLRDRLRLWSID 32 | LNDQSLNQRLARDASQLDHLATVDLSAASDSISIKLVELLLPPAWFELLT 33 | DLRSDQGVLPNGEVVTYEKISSMGNGYTFELESLIFAAIARSVCELLDLD 34 | QSAVSVYGDDIIIPSDAAQTLMDVFEYVGFTANRKKTFITGPFRESCGKH 35 | WFLGVDVTPFYIRRPIRSLADMILVLNNLYRWGTVDGVWDPRALTVYQKY 36 | VKLLPRNWRRNTIPDGYGDGALVGSALTNPFVLVRNFQREYPVLVEVQKD 37 | TPRSEKGAYLYHLLRDREARHNPFLYDTDWVRFDEAPLATRLRRKTGRYK 38 | VAWIQDSAFIRPPYSTGLPEVKFARKTLVRNGKGAR 39 | 40 | -------------------------------------------------------------------------------- /old/genomes/489828.2.fas: -------------------------------------------------------------------------------- 1 | >fig|489828.2.peg.1 [Microvirus Enterobacteria phage WA13 sensu lato] [A protein] 2 | MASEIFSDVVKSVWSHATAKHAHLRMAVQVDNRSRLLSDLVYQLEKRLSE 3 | ETHLDDETYALYESQTGLLEDHMALVRKCAAQLDNSNTIDHRTPLDAECV 4 | FLFEMICPGVRYGKTLNSLWTKYVAQWPEKLIRQELDMVKPLSFKDEVAK 5 | YMEKMQEKTRKNRMTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNEN 6 | PNALRDYFRTVGRAVLRAEGRSVKDSYNDCYRYLCVPEFGGQHGRLHWHV 7 | VHMVRTLPLGSYDPNFGRKVRNYRQINSFRGMWPYGFTQPIAVRYQHDAY 8 | SRKGWLWPVDKSGKAMQSKPYQAVAWYVTKYVAKQSDQRQKAITERQKKC 9 | KNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPLY 10 | QIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKNIRRLMKKTPEFNWQ 11 | SSIASMTVTLKNGDISDEARQYIIDAGITPFDLRAKATQTFGGK 12 | 13 | >fig|489828.2.peg.2 [Microvirus Enterobacteria phage WA13 sensu lato] [Phage capsid assembly] 14 | MQESTYGNLSEKGIQSSQQPETRNGVTVDGASQQQSASGAEPNQLRFQPS 15 | VSDSERERQKAIDLEHRRAAFARHFGCAPGSEKYVEKYPSFDEKDTRVQL 16 | AEFYRFNDGHLKKWGYF 17 | 18 | >fig|489828.2.peg.3 [Microvirus Enterobacteria phage WA13 sensu lato] [Phage protein] 19 | MKHVNTLLMQELRLLICELKRLKLSAVSDPDFSQEKIHAELDSLLRKLSR 20 | YFD 21 | 22 | >fig|489828.2.peg.4 [Microvirus Enterobacteria phage WA13 sensu lato] [DNA maturase, phage-associated] 23 | MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQWFQIED 24 | WKGNHKKLLDDLKKRDYI 25 | 26 | >fig|489828.2.peg.5 [Microvirus Enterobacteria phage WA13 sensu lato] [Phage capsid assembly] 27 | MSNLVATDVNFATSVAALKMLQASAVLDITEEDFDFLTGDKIWIATDRNR 28 | ARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEG 29 | AEFTENIVNGVERPVKAAELFAYTLRVKAGFKETVLSAEENARQKLRASG 30 | VM 31 | 32 | >fig|489828.2.peg.6 [Microvirus Enterobacteria phage WA13 sensu lato] [Phage endolysin] 33 | MEHWTLWDTLAFLLLLSLLLPSLLIMFIPSTFRRPASSWKALSLRKTLLM 34 | ASSVRLKPLSSSRTPCVLRPDSKKRF 35 | 36 | >fig|489828.2.peg.7 [Microvirus Enterobacteria phage WA13 sensu lato] [Phage protein] 37 | MKKARRSPSRKKGARLWYVGGSQF 38 | 39 | >fig|489828.2.peg.8 [Microvirus Enterobacteria phage WA13 sensu lato] [Phage major capsid protein #Fam0055] 40 | MSNVQTSAERIPHDLSHLVFDAGKIGRLKVVSWTPVVAGDSFELDMIGAI 41 | RLSPLRRGLAVDSRVDLFTFYVPHRHVYGEQWIDFMKQGVDAAPLAPVQC 42 | SRGWDSAQYLATIPSSNLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPS 43 | NMEGEDVRFGVRACNLKTIWTAPLPPDTETSHSMETETNSIDIMGLQAAY 44 | AQLHTEQERDYFMTRYRDIVNEFGGSTSYDADNRPLLVMHSEFWASGYDV 45 | DGTDQSSLGQFSGRVQQTFKHSVPRFFCPEHGTMFTLALVRFPPTHEMEM 46 | HYLVGKEDLTYTDLACDPALMANLPPREVNMSQFFHSGSASAKFKIAEGQ 47 | WYRMQPDRVALPYNYLDGFPFYSAIPSDDIKQRVLVNTDNYDEVFQSMQL 48 | AHWNMQTKFNCTIYRNMPTTRDSIMTS 49 | 50 | >fig|489828.2.peg.9 [Microvirus Enterobacteria phage WA13 sensu lato] [Phage capsid and scaffold] 51 | MFQVYVSKHVAPFTSVNRAFSIAPAANPEVVNSGEIVAGRSTFRIASSIA 52 | SASNGSGFAFVQMMDPNSPDSQQVFSVAASLSFSVDSNYIPCVVRFESTV 53 | AQPTSFDIATADFIPVEASALSPRALSVRDCVTVDVKPRTEGNNVFVGVV 54 | FFSAAANAGNVTGVVSMAQVDHEVTALQPLK 55 | 56 | >fig|489828.2.peg.10 [Microvirus Enterobacteria phage WA13 sensu lato] [Phage capsid and scaffold] 57 | MLGAVVGGIASALAGGAASKLFGGKPAAQAATESSGLSNGQGVIGMDQDA 58 | GIQSAIQGSNVPNGQIPAPTQTGGVMSDAKNMIKNAGKDLLDGVMTAGSD 59 | RIKQALVDKLSGNDAKKQGQATRDYLAAAFPELNAWERAGAGASGAGLES 60 | SGQNQQKELMRMQLDTQKDIAKMQMHNNLQIAGIQSATSRENTKDSVYAQ 61 | NEMLKFNQQESQARVESILANTDLTAKQAAHEIMRMALTRAQETGQHLTN 62 | SQIMALEKKVYAEIGKIHQDTQNARYGSSQVTAAAKDVTNMITDATSGAA 63 | DWVSQQWNSFFKDGKSNGIPLNTRK 64 | 65 | -------------------------------------------------------------------------------- /old/genomes/593131.2.fas: -------------------------------------------------------------------------------- 1 | >fig|593131.2.peg.1 [Cystoviridae Pseudomonas phage phi2954] [Phage nucleocapsid protein] 2 | MAKPPLRLPGVSGRAEKATAKPKMSKLDAAKAAVGAAGAAGTAVWGLDEL 3 | LSFAQEHYPSAYGLVSGMFQEQGVDIESDAVKNGTGNTRANVLAAFARSG 4 | VDAAFIGSVGLSDQEKLGMLGLMAKYEQSMVAEVDKSQSARVSTGNQVLD 5 | RDIMVLEHARACELLGLTGPRRIKDLYLLVRTINTMTEAHVEAFEQYESI 6 | FGRARSRGTL 7 | 8 | >fig|593131.2.peg.2 [Cystoviridae Pseudomonas phage phi2954] [Phage capsid assembly] 9 | MGAVNALGQANPLVKSVIDSLMGTMAKNPAAIQEISSVVEKIAQMKNLSV 10 | EELINSGGLGRALLEKFTQGAVVQEEKVTELQSMSCDKCGHIHYQMVEQY 11 | RPRSPLAQLAGVAKAS 12 | 13 | >fig|593131.2.peg.3 [Cystoviridae Pseudomonas phage phi2954] [Phage protein] 14 | MFAKSVKVTLDRSGTEIKATKVEERTLIEGVGDAFTSIVNDDIAVGGLGV 15 | TVAMVGAIAGTAYGVNRVLTGRFNANPFSAG 16 | 17 | >fig|593131.2.peg.4 [Cystoviridae Pseudomonas phage phi2954] [Phage protein] 18 | MSKQGGVKVAQAVAALSSPGLKIDGIVGKATRAAVSSMPSSQKAATDKIL 19 | QSAGIGSLDSLLAEPAAATSDTFREVVLAVAREARKRGLNPAFYVAHIAL 20 | ETGWGRSVPKLPDGRSSYNYAGLKYAAVKTQVKGKTETNTLEYIKSLPKT 21 | VRDSFAVFASAGDFSRVYFWYLLDSPSAYRYPGLKNAKTAQEFGDILQKG 22 | GYATDPAYAAKVASIASTAVARYGSDVSSVA 23 | 24 | -------------------------------------------------------------------------------- /old/genomes/593131.3.fas: -------------------------------------------------------------------------------- 1 | >fig|593131.3.peg.1 [Pseudomonas phage phi2954] [P10] 2 | MNKVLDPLLLKDTAPRSHVALVYLAVGLGLGIFVFGSDSTSG 3 | 4 | >fig|593131.3.peg.2 [Pseudomonas phage phi2954] [P16] 5 | MAHARISTSTRPTFSRSLDVAHQSSGFHDRLFVAGVRMWNHEHTSMQRAL 6 | RRLHLASSRVINFSVFLLLGSGAGTLLM 7 | 8 | >fig|593131.3.peg.3 [Pseudomonas phage phi2954] [P6] 9 | MPGWLCKIWKFFANLLGKIVDFIVDVLSAIVDLAVAAVGSIADALLSGGL 10 | GSWLLLGAAAFIGYKIFFAKKDEDDEEEEQPVERRPREEVIRQRPSSPQG 11 | TVTARDFGMPRG 12 | 13 | >fig|593131.3.peg.4 [Pseudomonas phage phi2954] [P3] 14 | MSTALVRRWLADNCPLDLSKETTKPTFVVFKANTAAGEILQIFKRSTATS 15 | WVSDQLLGKLQAVATTDGQKRIARAVSAKVMRPVLFGNDYMIAPVSALNT 16 | LRFNQVTGQNTLTAVTGLTRNQVLSRQAQTIPSVVIPEAADPAFGLMPGL 17 | TINSFDPGWFVENGAYPYYDAKMREAGFGQSTPPKAKTARSDVERNRMVE 18 | EAIAEAGPDMCTLFLTTQITGPGFEGASRVVIYWSYPAADHAFLAIDARA 19 | MSSALYMYPNDRGSIYLDATYATEVPVIADPAFQKRYAMMGKLNPAYKPE 20 | TELLAYQKPGQVEADDCWLPLLTSAGNQDLFFRVLDENCNVVVQNEVDMQ 21 | VVTITATGCEFAGVLPVSWYVGYVERAVEDGVSNKGELEDATKAMGEYID 22 | KDITFLSYSSAEMLPVDMVKLTTLYIDYAKAKKKACEDNDFMSKEFVKGT 23 | TYGTLNTLINGSRSVQTFFGYRDANQASTIAPKLADTLTKVGWRVDVSAD 24 | PLKITDNTGAANGTIAFGDVEALGTFLGDGGVISFGTVELLAARWGLSAT 25 | VVNEQLAGRSDLTKNVTGLGKMGSVNNKYDFRWGSVGITGLPDYRNVEVQ 26 | DSYRIAMISKGVVGAVGAKFLGLLVSELNSEYVKTVLAKI 27 | 28 | -------------------------------------------------------------------------------- /old/genomes/642111.2.fas: -------------------------------------------------------------------------------- 1 | >fig|642111.2.peg.1 [unclassified Inoviridae Vibrio phage VEJphi] [rolling circle replication protein, phage related] 2 | MIRFALSKLTTWLLLSPMRICATWTKATTKTLSIYRCPFTTSQKLKPRNK 3 | ARFALPWNKSSIIWKRTKTKCQRCFFIASICSCPKSWLSLSPMRGRGLHG 4 | YNDSMVILDMTGQVECGLVGIGGNNDTVFVQINGTGCTKLFDRIDSKNLH 5 | WWLAQVLGITRLVRLDLAVDDYTGNFDAKYAEKCFYEGAFRTAPRGQGPS 6 | MVPHKRITENGALMEEATIVGSRSSAIYWRIYNKKLEQKITDPDLIWYRN 7 | EVELKKCDIELLANPAASFAGICPFAASIECTPPVKFSRNKKAQGLEFMA 8 | RIAWVRRQCGVALAEVIAMTQGDLGEAFGMLIPHKHRRPDFELLGVPDSY 9 | TQLKNTILELR 10 | 11 | >fig|642111.2.peg.2 [unclassified Inoviridae Vibrio phage VEJphi] [Phage integrase] 12 | MANITGIVIKTFPKSGTTIAELNVLRPVETVNVEKFAQYGLGLNTDIPFN 13 | KQPLRIEPTYAKRLIETRAFVPNREYDIRFGSNPDDPLEVVAVELIPKDD 14 | DLKKYFTETLKK 15 | 16 | >fig|642111.2.peg.3 [unclassified Inoviridae Vibrio phage VEJphi] [Single stranded DNA-binding protein, phage-associated] 17 | MPVCALPNSQGFLAVTDKPLNECDGGYVAVTIQDYDYLMSYTRITPTDAG 18 | TAFSFGFMAVFALGYLYTYAVYIGKKLINLL 19 | 20 | >fig|642111.2.peg.4 [unclassified Inoviridae Vibrio phage VEJphi] [putative major capsid protein, phage related] 21 | MADIFGAIDFAGVAALVTAAGVSIIGITMAFKGISLGKRAVNKA 22 | 23 | >fig|642111.2.peg.5 [unclassified Inoviridae Vibrio phage VEJphi] [putative minor capsid protein, phage related] 24 | MLIALHDIQLIIFALLGGMSGFIAALNFR 25 | 26 | >fig|642111.2.peg.6 [unclassified Inoviridae Vibrio phage VEJphi] [putative adsorption protein, phage related] 27 | MVMFMRKFFIISLVISLYFTVLPAFAAYQLPFDQTKTFPTVQAAAEYYAN 28 | LLGGTSCKADGNRFKIYRVKSISDPSFVIQQETYLDNKCQVFSSKGDISV 29 | TLIVVDDPTTCEASKGQTGKVGWNSYFWGSATPSRYICSSANGGCVALTG 30 | DHLCINIDPEALKNDPSLYDCDALYIVQDTPCSPSGDYPFCTDENCSSFL 31 | PEPNPNPNPEPEPEPEPQPDPEHNPSDPTAPLPDSGGEVINPSVPPKPPT 32 | EEKPKPDVETPDPTPDSNSDVVQSVTGMNEDMNELLTRLNSDNNKQLDDV 33 | NNQLLQLNTQSQRIVAQIAKQEKQDAAIYENTKALIQNLNKDVTTAVNKT 34 | TNAVNALGSKVDGLSDAVDGLGEDVSAIKDAITNVDTSGAGISGTCIESD 35 | TCTGFYESGYPDGISGIFTEHFDTVSKSVTDTVKDFMKIDLSHAQRPSFS 36 | IPVLHFGNFSFDDYINLDWIFGFVRVCMMVSTAFLCRKIIFGG 37 | 38 | >fig|642111.2.peg.7 [unclassified Inoviridae Vibrio phage VEJphi] [VSK receptor, phage related] 39 | MDWVIDLFNKLIEFLYRLLITLIDMLKDVFLWLIDGVLSAVNLLLEKALS 40 | LIEPMDVSPYLTGIPSGAAWVISAIGIPQCLGMIMSAIIIRILLQLVPFT 41 | RLGS 42 | 43 | >fig|642111.2.peg.8 [unclassified Inoviridae Vibrio phage VEJphi] [Zona occludens toxin] 44 | MLGYDYVSNHYSYLITTCSIYSFRFLTMIYAIVGRPRSGKSYESVVYHII 45 | PAIQSGRKVITNIPLNIPMFEKVFGESAKYLIKVIDAQFTEYGSMNRPFS 46 | KVEHYLDDWRDGKNRAPLYVIDEAHMVIPTRLGTPKILEFYSMHGHYGID 47 | IIILTQNLRKIHADIRAMIEMTYYCAKNTAFGSKKTYTKKVRIGDTREDI 48 | NIEQHTYKEHYFGFYQSHTQSSGAVDEAQAFDITPIWKRWPFWGSLICFI 49 | IVILILGYYFQSRKSKTIDAQPLPAEQVEQVPLSAPPQPSISKPQQTIKT 50 | VPVSEPLKDFKLYVSGHAKQIAYKKMSFSREIDTKLTFYHVYISAYQDDQ 51 | FSFSLNNIDLEKMGYQFEALTECVYRITWGSNSRVITCIDESRFNQQKAE 52 | TVFDHVPKLGI 53 | 54 | >fig|642111.2.peg.9 [unclassified Inoviridae Vibrio phage VEJphi] [Transcriptional regulator] 55 | MLIKLPILGVLSMNRSEMTKNFVFREFECGLSVEEAAKLCFKTVNEVKQW 56 | DAGEKIPPICKRLMRWHSRKELYYGDEWWGFRMEGGRLIFPTGDRVAPQQ 57 | LLAAIAILQIQAPDDAMTRSKLLKYARAMARIKGIK 58 | 59 | >fig|642111.2.peg.10 [unclassified Inoviridae Vibrio phage VEJphi] [Phage-related protein] 60 | MYANELLNAYKKAKNYIQDKQIAHDLNLQPSMISKIRTGIRYVSDEEAIF 61 | LAESAGIEPEIALLGIHADRNENPRIKALWESIAKKQNGLGLRTISML 62 | 63 | >fig|642111.2.peg.11 [unclassified Inoviridae Vibrio phage VEJphi] [Phage protein] 64 | MGDFIYYDNEPNIGINVYFVWGHRFFKNWPEFEQYLAVHYGSDPYQLVEI 65 | TNENYNELLLKGVFHAM 66 | 67 | -------------------------------------------------------------------------------- /old/genomes/70203.1.fas: -------------------------------------------------------------------------------- 1 | >fig|70203.1.peg.1 [Vibrio cholerae O139 fs1 phage] [putative minor capsid protein, phage related] 2 | MLIALHDIQLIIFALLGGMSGFIAALNFR 3 | 4 | >fig|70203.1.peg.2 [Vibrio cholerae O139 fs1 phage] [putative adsorption protein, phage related] 5 | MVMFMRKFFIISLVISLYFTVLPAFAAYQLPFDQTKTFPTVQAAAEYYAN 6 | LLGGTSCKADGNRFKIYRVKSISDPSFVIQQETYLDNKCQVFSSKGDISV 7 | TLIVVDDPTTCEASKGQTGKVGWNSYFWGSATPSRYICSSAYGGCVALTG 8 | DHLCINIDPEALKNDPSLYDCDALYIVQDTPCSPSGDYPFCTDENCSSFL 9 | PEPNPNPNPDPEPEPEPQPDPEHNPSDLRPRFLILAVKSLIPLCHLNHRL 10 | RKSLSLM 11 | 12 | >fig|70203.1.peg.3 [Vibrio cholerae O139 fs1 phage] [putative adsorption protein, phage related] 13 | MPPKPPTEEKPKPDVETPDPTPDSNSDVVQSVTGMNEDMNELLTRLNSDN 14 | NKQLDDVNNQLLQLNTQSQRIVAQIAKQEKQDAAIYENTKALIQNLNKDL 15 | TTAVNKTTNAVNALGSKVDGLSDAVDGLGEDVSAIKDAITNVDTSGAGIS 16 | GTCIESDTCTGFYESGYPDGIQAYFHSILKSSLKVLLIPSKTL 17 | 18 | >fig|70203.1.peg.4 [Vibrio cholerae O139 fs1 phage] [VSK receptor, phage related] 19 | MDWVIDLFNKLIEFLYRLLITLIDMLKDVFLWLIDGVLSAVNLLLEKALS 20 | LIEPMDVSSYLTGIPSGAAWVISAIGIPQCLGMIMSAIIVRILFQLVPFT 21 | RLGS 22 | 23 | >fig|70203.1.peg.5 [Vibrio cholerae O139 fs1 phage] [Zona occludens toxin] 24 | MIYAIVGRPRSGKSYESVVYHIIPAIQSGRKVITNIPLNIPMFEKVFGES 25 | AKYLIKVIDAQFTEYGSMNRPFSKVEHYLDDWRDGKNRAPLYVIDEAHMV 26 | IPTRLGDPKILEFYSMHGHYGIDIIILTQNLRKIHSDIRAMIEMTYYCAK 27 | NTAFGSKKTYTKKVRIGDTREDINIEQRTYKEHYFGFYQSHTQSSGAVDE 28 | AQAFDITPIWKRWPFWGSLICFIIVILILGYYFQSRKSKTIDAQPLPAEQ 29 | VEQVPLSAPPQPSISKPQQTIKTFPVSEPLKDFKLYVSGHAKQIAYKKMS 30 | FSREIDTKLTFYHVYISAYQDDQFSFSLNNIDLEKMGYQFEALTECVYRI 31 | TWGSNSRVITCIYESRFNQQKAETVFDHVPKLGF 32 | 33 | >fig|70203.1.peg.6 [Vibrio cholerae O139 fs1 phage] [Phage protein] 34 | MKADLINKRPKLYSTMFLNLVFSKKLPQAIRRTGQRASVGQVSRREWQPR 35 | RD 36 | 37 | >fig|70203.1.peg.7 [Vibrio cholerae O139 fs1 phage] [Phage protein] 38 | MIINTLAPEKIPFALPSHKRCFSKRSS 39 | 40 | >fig|70203.1.peg.8 [Vibrio cholerae O139 fs1 phage] [Phage protein] 41 | MYCINQNWLLISNQIWLFRI 42 | 43 | >fig|70203.1.peg.9 [Vibrio cholerae O139 fs1 phage] [DNA primase; involved in replication, phage related] 44 | MANSAKKQTLSQSVNPFVTIQLTSGALPRFLAHSGFDSDGSQRFSVTSVS 45 | TDAHKMPLPTANAILPKIKRNWPLAQISYQVK 46 | 47 | >fig|70203.1.peg.10 [Vibrio cholerae O139 fs1 phage] [Phage protein] 48 | MISSTTTTNPTSELTCISFGGIVSLKTGLSLSNILPFTMALTHIN 49 | 50 | >fig|70203.1.peg.11 [Vibrio cholerae O139 fs1 phage] [rolling circle replication protein, phage related] 51 | MPCKHPHHDTVRPVKVDHLAFTFAYADLRHLDKSNDQDFINLQMPVYHEP 52 | KTKTKEQGAVCSTLEQIEHHMEAHKNKVSKMLFHRFDLFMSKIMGFRLSP 53 | MRGRGLHGYNDSMVILDMTGQVECGLVGIGGNNDTVFVQINGTGCTKLFD 54 | RIDSKKLHWWLAQVLG 55 | 56 | >fig|70203.1.peg.12 [Vibrio cholerae O139 fs1 phage] [rolling circle replication protein, phage related] 57 | MACSGFGVTRLVRLDLAVDDYTGNFDAKYAEKCFYEGAFRTAPRGQGPSM 58 | VPHKRITENGALMEEATIVGSRSSAIYWRIYNKKLEQKITDPDLIWYRNE 59 | VELKKCDIELLANPAASFAGICPFAASIECTPPVKFSRNKKAQGLEFMAR 60 | IAWVRRQCGVALAEVIAMTQGDLGEAFGMLIPHKHRRPDFELLGVPDSYA 61 | QLKNTLWS 62 | 63 | >fig|70203.1.peg.13 [Vibrio cholerae O139 fs1 phage] [Phage integrase] 64 | MANITGIVIKTFPKSGTTIAELNVLRPVETVNVEKFAQYGLGLNTDIPFN 65 | KQPLRIEPTYAKRLIETRAFVPNREYDIRFGSNPDDPLEVVAVELIPKDD 66 | DLKKYFTETLKK 67 | 68 | >fig|70203.1.peg.14 [Vibrio cholerae O139 fs1 phage] [Single stranded DNA-binding protein, phage-associated] 69 | MPVCALPNSQGFLAVTDKPLNECDGGYVAVTIQDYDYLMSYTRITPTDAG 70 | TAFSFGFMAVFALGYLYTYAVYIGKKLINLL 71 | 72 | >fig|70203.1.peg.15 [Vibrio cholerae O139 fs1 phage] [putative major capsid protein, phage related] 73 | MADIFGAIDFAGVAALVTAAGVSIIGITMAFKGISLGKRAVNKA 74 | 75 | -------------------------------------------------------------------------------- /old/genomes/74336.1.fas: -------------------------------------------------------------------------------- 1 | >fig|74336.1.peg.1 [Bacteriophage M11] [Phage capsid and scaffold] 2 | MPRLPRGLRFGANMEVLNDFQELWYPESRVDSDTIFPLYTFKGNMGGSFF 3 | DTYGTNNIVRQVRRTPHRATVPIASSGLRPCTSVWYDPSSLLFRIPEMRA 4 | VWDNGMGDTGDIVYNDFLFNTPAPKEFDFSNSLAPRYSNAFSAFNAKYGV 5 | IIGEGRETLKYFALLLRRLHKAVRAVRHGDLRGLRRILDSYHKGHWKPAT 6 | AGNLWLEFRYGLVPLFHDIKDVMNDWTRINDKIQKYRRFSVGHGEDFKLS 7 | IDGLYPGLTHFRLSGEITVQRRHRWGIVYANREGYATFDNGSIRPVSDWK 8 | ELANAFINPGEVAWELTPYSFVVDWFINVGDIIEQQKQLYQNIDIVDGYQ 9 | RRDIRMRSVTLKGVRNGIPVRVTGSVELVDSFYNRSHTTRIPQATLELDT 10 | SFSSIKHVLDSISLITQRIKR 11 | 12 | >fig|74336.1.peg.2 [Bacteriophage M11] [Phage capsid and scaffold] 13 | MAKLQAITLSGIGKKGDVTLDLNPRGVNPTNGVAALSEAGAVPALEKRVT 14 | ISVSQPSRNRKNYKVQVKIQNPTSCTASGTCDPSVTRSAYSDVTFSFTQY 15 | STVEERALVRTELQALLADPMLVNAIDNLNPAYWTALLGVGSGPSPGPGP 16 | DPDPPPEPPPGTGSYTCPFRIWDLSSVYEAANSSHSWDIYNAVELSPRNF 17 | DVALDDLLGNTNWRDWDGRLRYTTFRGCRGNGYIDLDATSLMKDEYLTSS 18 | KYLVREGKRPGVFGNIERFVYLKSINAYCSLSDITAYRTDGVIVGFWRDP 19 | SSGGAIPFDFNEFDSNKCPIQAVIVVPRL 20 | 21 | >fig|74336.1.peg.3 [Bacteriophage M11] [Phage capsid and scaffold] 22 | MAKLQAITLSGIGKKGDVTLDLNPRGVNPTNGVAALSEAGAVPALEKRVT 23 | ISVSQPSRNRKNYKVQVKIQNPTSCTASGTCDPSVTRSAYSDVTFSFTQY 24 | STVEERALVRTELQALLADPMLVNAIDNLNPAY 25 | 26 | >fig|74336.1.peg.4 [Bacteriophage M11] [RNA-dependent RNA polymerase] 27 | MSKTSQSRKSLSGKLRRAANTRIVVEDNLALSIANDLLSALDVESFSSEE 28 | DCISRSPKFDLSADQFRNSYLAAEIMSKYDSFSLGINTEAVAWEKFLAAE 29 | AECAITNQRLYRPNYNEDFNFSLGEACIHMARRKIVKLLGDSVPFEAMLR 30 | HCRFSGGATTTNNRSYGHPSFKFALTQECTPRAVPYVQALKACTGMDLGI 31 | TKVSPFNKAVTVPKNSKTDRCIAIEPGWNMFFQLGIGGVIREKLRLWGID 32 | LNDQTINQTRAYLGSRDDNLATVDLSRASDTISLALVELLMPPEWFKVLL 33 | ALRSPKGILPDGTVITYEKISSMGNGYTFELESLIFAALARSLCELLGLR 34 | PSDVTVYGDDIILPSDACSPLVEVFSYVGFRTNKKKTFSSGPFRESCGKH 35 | YFLGVDVTPFYIRRRIVSPSDLILVLNQMYRWATIDGVWDPRVYPVYTKY 36 | RRYLPEILRRNVVPDGYGDGALVGSVLISPFAENRGWVRRVPMIIDKRKD 37 | RVRDEYGSYLYELWSLQQLECDSEFPFNGSLVVGSTDGTLAYAHRERLPT 38 | VISDAVSAFDIMWIPCSSRVLAPYGDFRRHEGSILKMG 39 | 40 | -------------------------------------------------------------------------------- /old/genomes/75725.1.fas: -------------------------------------------------------------------------------- 1 | >fig|75725.1.peg.1 [Enterobacteria phage NL95] [involved in particle maturation and bacterial lysis] 2 | MPTLPRGLRFGSNGEIVNDFNALWFPEREAFDLELGSYTLTGYVSNQPGY 3 | TTRMRNPRMHCVRTPHRSTVPVNHFGYRPVTTVEYVPNGTFIRLDGDVKF 4 | SGGSVSGSLKLNNFVVNLASQGGFDYQSVIGPRFSSQFSAFSTKYGALLG 5 | EGRETLSYLLLLFRRMREGIRAVRRGDLKRLRNLIRTFEPRSISGRRQRT 6 | TFSETYRDRLVNDGWKDSSASDLWLEFRYGLMPLFYDIKSVMEDFMRIHK 7 | KIAKLQRFSAGHGKLVTVKGRFFPDPHFAIEVTAVLQRRHRWGVIYQDTG 8 | SLPPFNNGQLIPVRDWQTAALALLNPAETAWELTPYSFVADWFVNVGDML 9 | EQTRPALSVNVDVVDGFDRKDVKLRSVSVRVIRDDATTTSFNLSGAKLLH 10 | SFYSRVHTVAFPQISPQLDTEVRSFKHVIDSVALLTQRFKKR 11 | 12 | >fig|75725.1.peg.2 [Enterobacteria phage NL95] [Phage capsid and scaffold] 13 | MAKLNKVTLTGIGKAGNQTLTLTPRGVNPTNGVASLSEAGAVPALEKRVT 14 | VSVAQPSRNRKNYKVQIKLQNPTACTKDACDPSVTRSGSRDVTLSFTSYS 15 | TERERALIRTELAALLKDDLIVDAIDNLNPAYWAALLAASPGGGNNPYPG 16 | VPDSPNVKPPGGTGTYRCPFACYRRGELITEAKDGACALYACGSEALVEF 17 | EYALEDFLGNEFWRNWDGRLSKYDIETHRRCRGNGYVDLDASVMQSDEYV 18 | LSGAYDVVKMQPPGTFDSPRYYLHLMDGIYVDLAEVTAYRSYGMVIGFWT 19 | DSKSPQLPTDFTRFNRHNCPVQTVIVIPSL 20 | 21 | >fig|75725.1.peg.3 [Enterobacteria phage NL95] [Phage capsid and scaffold] 22 | MAKLNKVTLTGIGKAGNQTLTLTPRGVNPTNGVASLSEAGAVPALEKRVT 23 | VSVAQPSRNRKNYKVQIKLQNPTACTKDACDPSVTRSGSRDVTLSFTSYS 24 | TERERALIRTELAALLKDDLIVDAIDNLNPAY 25 | 26 | >fig|75725.1.peg.4 [Enterobacteria phage NL95] [RNA-dependent RNA polymerase] 27 | MSKTACHKKKITQTLSKVDINFEDDIHMSIANDLLQACGVAPLASAEQCI 28 | NTPFPDTSMNPDEFRIQYLRSEILSKFSAHPLGIDTEAAAWEKFLAAEEG 29 | CRLTNERLTKVKYHDNSILSWGERVIHTARRKILKLIGEAAPLGDVALRA 30 | RFSGGATTSVNRLHGHPSWKHACPQDVTKRALKYLIAYKKACGDVVDLRV 31 | NEVRTSNKAVTVPKNSKTDRCIAIEPGWNMFFQLGVGAVLRDRLRLWHID 32 | LNDQSVNQRLARDASQLDHLATVDLSAASDSISLRLVELLMPPAWFDLLT 33 | DLRSDQGILPDGRVVTYEKISSMGNGYTFELESLIFAALARSVCELLDLD 34 | QSTVSVYGDDIIIDSRAADVLMAVFEYVGFTPNRKKTFIKGPFRESCGKH 35 | WHSGVDVTPFYIRRPIRCLADMILVLNSIYRWGTIDGVWDPRVLPVYQKY 36 | VKLLPRDWRRNTIPDGYGDGALVGLATTNPFVIVRNYSRWYPVLVEVQRD 37 | AKRHEFGSYLYALLRDRDARYSPFLRVADGTGFDEAPLATSLRRKTGRYK 38 | VAWIQDSAFIRPPYFIKGIPEVKLAS 39 | 40 | -------------------------------------------------------------------------------- /old/genomes/83201.1.fas: -------------------------------------------------------------------------------- 1 | >fig|83201.1.peg.1 [Vibrio cholerae filamentous bacteriophage fs-2] [Phage replication protein] 2 | MAYQQVIDLATGKREVIDFLPAVTSIANPDHKLWTGRQSPNPSLSVADYD 3 | KSYRPEIVAHNRKLSVISNSLDNLIPSQDRTESHSSPLSLAPCQDVAQYI 4 | RRHGDFAPHMQRAFTNILERRDYTTALSMHSKDAHDRLSRDGIRFARTDD 5 | ECVELAKAKAKAFSKTLSKFDEIEEPFTKACELLASLGLSFRPELIKQKR 6 | QSNELECLTSRAMCENWLRRQLRRRYFAEVEAVRDLLLVSKNENPYCSAH 7 | GLEVMKSRKSATEQVLSNTVCYVEDNPETWFTLQELAAKSLSNPTIRRAE 8 | MFVRLKAFEDICKESGHVAMFYTVTAPSRFHVFKGDDINPKWLEAGKPSA 9 | IDAHHHLMGVTNAFRKALDKAKIKIYGLRIVEPHHDGTPHNHFLFFMLPE 10 | HESVVTRILGDCALSDSPNESGAKKYRFKAEKIDFKKGSAVGYVAKYLSK 11 | NIDGQHIDFDRNSNKSGTEAAQSVVSFNRLNGVRQFQFYGGCSVSVWREM 12 | RRLRDEIKEDDAVITSNQFSKDEHFVLETIRRAADEGDFKRFLIAMGGVF 13 | VKRKEQTLQTAYAKKINVDGLFLRTRYGDEMSAAIQGILFKGRLIPTRFK 14 | DWRFATKKQFIRGVRTMMTGTRMIFSSLEEEFEYRSMLAEEYERMQEEAA 15 | FWFEVASAESCVMYGDEIYLEDAPPPDWCWGWAHDPDTIGCLGLVSLTVA 16 | IFFKPISNHTVRTNKK 17 | 18 | >fig|83201.1.peg.2 [Vibrio cholerae filamentous bacteriophage fs-2] [Phage protein] 19 | MITQGLISDKDDIQTKVFNNPTTGEIRTSGVINLLVSKPTQVITVKVSEE 20 | LWRESNNGQFFQSLVGKSIDYCLSPKDFSFTRDGQQVSGTNINLFKLPEV 21 | KDVK 22 | 23 | >fig|83201.1.peg.3 [Vibrio cholerae filamentous bacteriophage fs-2] [Phage protein] 24 | MTEEQFLQLMTQLESLWWLVFAGFIAVLVGLGLIAGQQR 25 | 26 | >fig|83201.1.peg.4 [Vibrio cholerae filamentous bacteriophage fs-2] [Phage capsid and scaffold] 27 | MTDFQFLLPTFFGALIMGYAVGFKWLVFKKATEAIASD 28 | 29 | >fig|83201.1.peg.5 [Vibrio cholerae filamentous bacteriophage fs-2] [Phage protein] 30 | MKKSTKAALIVASLAAVAATGANAAIPQEAQAALDAVGEFTSTVVGWMWG 31 | VGTAMIVGFVGLKVVKKGANKAT 32 | 33 | >fig|83201.1.peg.6 [Vibrio cholerae filamentous bacteriophage fs-2] [Phage protein] 34 | MRTVLTLFSTTLLLSISFSSFAYYQLPFWPDKTYLTPEAAAAAYLDILGG 35 | GSCKRDTRNFIKASISSINTPHIAYRIDKYLDDQCIVLSSTGNASVTLNV 36 | VDNCPDGTSPDLSTGMCKPKPDTPQYCGTSAMFEDVANLYNACYEQNGIL 37 | SYTCDESTQALDAKCDLTTSDQCVIGRPTWPDCLDKPHQPNDPTNPLPPV 38 | GGFNPSPVNPSVPPSPVEKPDVQEPDKTETSDTGVINAIKNLNDDLNKSN 39 | TDIHNDMNNIFSTMNDALRQLNSTNTAIGQSIVEQMKQDAQIYDNKKLQQ 40 | QIAANNINAINSQTKSLLEGNKSITGSITGNTDRLVAAVNASGDGVVSAI 41 | DGLADKLKLCDPNTDPFNCEGENGLTPSSVESILKQTSAVVTTSQVDAEE 42 | GLLTTLKETIDNNLIEDTQSYLEDMKSDLIGALPNSSQCDVDVLKTPYGD 43 | FSIGCEYSARLKSILAFVFYIYTLYTLAEILFTGVTPVAGTVPYFSRR 44 | 45 | >fig|83201.1.peg.7 [Vibrio cholerae filamentous bacteriophage fs-2] [Phage capsid and scaffold] 46 | MAMPVFLLPIITGITGALRIPAIAAFLATLAANILSWFSERFTRAVAINL 47 | TVLTMVIGLALAAASAMYALAAGLAEITPPYVVDAWGMFVPSNAIPCVAA 48 | IFSAKVIRWVWGWQFT 49 | 50 | >fig|83201.1.peg.8 [Vibrio cholerae filamentous bacteriophage fs-2] [Phage maturase] 51 | MASVYFVTGKLGSGKSLIAVSRIRDALMRGVPVATNLNINLKEMIGRDKR 52 | NTRLYRLPDKPTVEDIEILGYAISPYDTSKDGLIVLDECGTWFNSRTWND 53 | KNRQALLDRFLHIRKLGWDVIFIVQNISMVDKQAREGLAEHVVHCKRLDR 54 | MQIPYLSTIVWILTLGQLKIPMPKLHIGIVKYGDTINALTVDKWMLWGTD 55 | LYSSYDTKQIFQNHYPHGTYSVLPPWYIHGRYTVPYTARNIMRITKILFR 56 | KYSRVAMFAVGPAFGAAFWHFTSPEPELIQLVQAQNQMLSSQPDSKLSEL 57 | LGGFTISRYTALPDAPVTFELSNGAKRLTSYELQSMGFEIEPLSRCEIII 58 | KSGAQNETIHC 59 | 60 | >fig|83201.1.peg.9 [Vibrio cholerae filamentous bacteriophage fs-2] [Phage maturase] 61 | MKLFTAKKSKNEKVVNPAPRWVIFRLFEKITRRGATSGHAAKQSTILKSA 62 | RQLLLILMLSLPAHAAPFESSDTPIAEFASWYSQQTGIKVVLGQGVLGSV 63 | SFTAPDLVPAEYPAFFDSVLRAHGYYLVKDGNAYVIKIAPEAKEVITPAI 64 | VKLYRFNYIRNSKLSDLVQSTLKATSSEFVKDKQVDNYSVEILPNTNALI 65 | VSGTAQQLEKLDVLLSAIDVPQRQIFIEAVITETELGDNSELGVNLQAAF 66 | DKAGFVTNLVNASKLKDNLFIFESGDFNALVKAISGSSDTRLLSRPNILI 67 | MDRERGYITVGQNVPFLVSNSTTDGGTSVQRIERKDVGVSLEVTPHVMGD 68 | DVILVINQESSSVTDSTIAADIITNKRTLMTTVAVKSGQTIVLGGLISDE 69 | KRNVESGVPVLKDTPLIGGLFRSTSTKNVQKELRVVIKSTVFIKGLYSPL 70 | ILAIALAYFTSFERVIASLGASICSIAIAVSSCCGATLSPVGILSALPPF 71 | 72 | -------------------------------------------------------------------------------- /old/genomes/90963.1.fas: -------------------------------------------------------------------------------- 1 | >fig|90963.1.peg.1 [Chlamydia phage PhiCPG1] [Phage capsid protein #Fam0039] 2 | MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDE 3 | VLPGDTFSLKEAFLARMATPIFPLMDNLRLDTQYFFVPLRLLWSNFQKFC 4 | GEQDNPGDSTDFLTPVLTAPSGGFIEGSIHDYLGLPTKVAGIECVAFWHR 5 | AYNLIWNQYYRDENIQESVDVEMGDTTSNEVNNYKLLKRGKRYDYFTSCL 6 | PWPQKGPAVTIGVGGIVPVQGLGIQWGNSSAPNPITASSWINSVNPTFIN 7 | STTPTPTGTNKILNYGQAYYIKKPGEATTDPTPRAYVDLGSTSPVTINSL 8 | REAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPV 9 | NISPIPQTSSTDSTSPQGNLAAYGTAIGSKRVFTKSFTEHGVILGLASVR 10 | ADLNYQQGLDRMWSRRTRWDFYWPALSHLGEQAVLNKEIYCQGPAVKDAQ 11 | NGNVVVDEQVFGYQERFAEYRYKTSKITGKFRSNATGSLDAWHLAQQFEN 12 | LPTLSPEFIEENPPMDRVVAVDTEPDFLLDGWFSLRCARPMPVYSVPGLI 13 | DHF 14 | 15 | >fig|90963.1.peg.2 [Chlamydia phage PhiCPG1] [Phage protein] 16 | MWRIYESRTTYEHSRFSSFWSCSRIILSPWNSFRSFRISWRTETKCDCEA 17 | NC 18 | 19 | >fig|90963.1.peg.3 [Chlamydia phage PhiCPG1] [Phage capsid and scaffold] 20 | MNPEQLTNTLGSAVSGVAQGLSFLPGIASGVLGYLGAQKQNATAKQIARE 21 | QMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSKGGASSPAGASWSPNNPV 22 | ESAMNSGLAVQRLTYERKKMQAELQNLREQNRLIRNQAIREGYLAERDKY 23 | MRVAGVPVATEMLDRTSGLLSSSAKAFKNLFSRKGR 24 | 25 | >fig|90963.1.peg.4 [Chlamydia phage PhiCPG1] [Phage capsid and scaffold] 26 | MFKSAYSEKKSVKMKFTQKSLTQQHNKDECDINNIVAKLNATGVLEHVER 27 | RSPRYMDCMDPMEYSEALNVVIEAQEQFDSLPAKVRERFGNDPEAMLDFL 28 | SREENYEEAKALGFVYEDGTSGAPHTFCEADPKDDQNVANQEPGLAQK 29 | 30 | >fig|90963.1.peg.5 [Chlamydia phage PhiCPG1] [Phage protein] 31 | MCKKVCKKCPKKGPKNAPKIGAFYERKTTSVIQST 32 | 33 | >fig|90963.1.peg.6 [Chlamydia phage PhiCPG1] [Phage protein] 34 | MQFLKKVFDFYVAEVCIFFVPFFNLILSLNFGP 35 | 36 | >fig|90963.1.peg.7 [Chlamydia phage PhiCPG1] [Phage protein] 37 | MARRRYRLPRRRSRRLFSRTALRMHPRNRLRRIMRGGIRF 38 | 39 | >fig|90963.1.peg.8 [Chlamydia phage PhiCPG1] [Phage protein] 40 | MPWRKCKFCRVQNAKIWSYRCIHEASLYSQNCFLTLTYEDRHLPENGSLV 41 | RDHPALFLMRLRKEIYPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKK 42 | LLSKKRGNPLFVSEKLMRLWPFGFSTVGSVMRQSAGYVARYSLKKVNGDI 43 | SQDHYGQRLPQFLMCSLKPGIGADWYEKYKRDVYPQDYLVVQDKGKSFTT 44 | RPPRYYDKLHSRFDPEEMDEVKQKRIEKVMALPQLTQDKAEVKQYIFNDR 45 | TKRLFRDYEEESY 46 | 47 | >fig|90963.1.peg.9 [Chlamydia phage PhiCPG1] [Phage protein] 48 | MKVFTVFDIKTEIYQQPFFMQATGAAIRAFSDMVNEDPSKNQFAAHPEDY 49 | ILYEIGSYDDSTGNFIPLDVPKALGTGLDFKHKQ 50 | 51 | -------------------------------------------------------------------------------- /old/genomes/93224.1.fas: -------------------------------------------------------------------------------- 1 | >fig|93224.1.peg.1 [SVTS2 plectrovirus] [hypothetical protein] 2 | MINLLANDVWNGAINVVVDIFMKIMDWMWALKLPGTNIPLFVIWVIGGVI 3 | NVILLLVNSSRGLSSVSRSSLQASKQISKGVKNISNDSKSDNKESNK 4 | 5 | >fig|93224.1.peg.2 [SVTS2 plectrovirus] [hypothetical protein] 6 | MIKLIFFFVIGLTVGFGFIANIVMATDLGFSTVKHYLESANDFYKLVAHL 7 | FIIATHPIFQLYIAFGIIIMGIRLIFIA 8 | 9 | >fig|93224.1.peg.3 [SVTS2 plectrovirus] [hypothetical protein] 10 | MRKRLLDVFIVFYLIFGWIFLFCGTVTTNNFSNTYKLYLKNNDTFKELTY 11 | DKANEYDFQSTLMLRQDYFMQGLDPSNYAFSFGIKLGGWDGLSADKNDNN 12 | YWFKLFTTNYRSYEITWNSQDISKGWQGKLILDDDSTGRFLKIIVYKNKI 13 | KYDFIFNIDIFEYLFFPIVSNQSYRHFDLDYLIFNSNYKNLINMDIIKNS 14 | NSQYFINDVKQDTFSLESFFQILDYFYSNILRVIFDISNFKEFIYFNSSN 15 | ENTGFAFFVKNGFLLYPKSMLFNILRFPDLSATYLNPIVNLYNAYNINVN 16 | QNYYSFFSNWQYQTDILPSNNDKYTQSIKLLDMTDKSKYQGFNLITFNAI 17 | NIGKDSLFQLMVLILAFIMLLIEIMKLIMVIFDEYHIKVVVDII 18 | 19 | >fig|93224.1.peg.4 [SVTS2 plectrovirus] [putative rep protein] 20 | MNNVFIQDNLTNKRHNVFMNALNYVKKEYYLKKVFYGNYVKNIVLPLELV 21 | NNNPRNKMGVKNTGKNDKKLWNSRIRSQGNCIRKAYENFWNCKNLSFLTL 22 | TYAVNEKDVKKCKNDLKLFFNNINRWWNNPIRSKNHKGILKYMYTYEYQK 23 | RGAVHFHIILNQKIPNSVVQQYWKHGINKNIKVRAGSNEDVVKYLAKYIV 24 | KTANNDKSQNHYDLNIKAYQFSKNCKNPKVKVGVIELSEQDLIYSVKDNL 25 | NYFSFCDKNGYKIGFSCDSYYGLDKFREFKKYVSADRKIFRNLVKNTNFT 26 | VNKNTNLRC 27 | 28 | >fig|93224.1.peg.5 [SVTS2 plectrovirus] [hypothetical protein] 29 | MADRDVKCKECGKIWTFTTKNTTYNSFRGLAKDTMISYGHYYFCPDNNCL 30 | GMYKHRRQDNCCIHKK 31 | 32 | >fig|93224.1.peg.6 [SVTS2 plectrovirus] [hypothetical protein] 33 | MNGFLVQLIDIATGKIIKDDKGNESKWDSYTFTPVIKLENGTVKGTKDLS 34 | KSKWFKITDENYLELKPYLIDGNLFYVSLKWDGKINIVEPYTENYNEQEF 35 | INKYSNNSSITESNS 36 | 37 | >fig|93224.1.peg.7 [SVTS2 plectrovirus] [hypothetical protein] 38 | MKKQTKLYKQRLKYLVNVIHQCLPTKIPLFMLRKVIKLYLNHNVIDIGVM 39 | EGQHFKLLVEQVKNYMLKIESENQK 40 | 41 | >fig|93224.1.peg.8 [SVTS2 plectrovirus] [hypothetical protein] 42 | MDIVAMILLVSIIILLYIYVISSMFFDKRKIKKDKLQNEKLELENEKLKL 43 | EIKDLKIRRVIINDCFCNNYFNTINVYVINIFNSKYSI 44 | 45 | >fig|93224.1.peg.9 [SVTS2 plectrovirus] [hypothetical protein] 46 | MTVFATIILILSMFMLLIFLTVSTVFKIKNKYLICPHCSKKVEFKEWGKR 47 | KIKKADKSVE 48 | 49 | >fig|93224.1.peg.10 [SVTS2 plectrovirus] [hypothetical protein] 50 | MNANFLAEGTSPDASVIKQIADFAGVLADWAIAFTNWFIGFLGSHMLLII 51 | PLVLMFVVLGIETIRKLIHGY 52 | 53 | >fig|93224.1.peg.11 [SVTS2 plectrovirus] [hypothetical protein] 54 | MQSVWDLYYEFMTIIFGVNHPIILDIVIFVVFLILVFGLLFLILSCIFRW 55 | IK 56 | 57 | >fig|93224.1.peg.12 [SVTS2 plectrovirus] [hypothetical protein] 58 | MDWNIFLQRVYRGLLQIFYFIPKTEIDNFVGSSIDNITYSVIMIGIWLVV 59 | FFLIWLSIFILYKTIRLVV 60 | 61 | >fig|93224.1.peg.13 [SVTS2 plectrovirus] [hypothetical protein] 62 | MFKIYFNLFRRQKNIKFSYWFVNWFIANILFYLFIVCFNLQFIYFSSTSV 63 | TDIILFIFLVIFDIIFFWSFFSNLFQTRKLIKIIKSSPISIINGALGTGK 64 | TLLMTYLSQIAKFDNVYSNYFINDEKIGVLGLNHLDFKNKNYKIPPNDSL 65 | ILFDEIFLYMNGAKPEENNKKFSGLIPYFLLCRQFDNNIVFAGQRINQNW 66 | VEYREIANMIIVPMQCIKPSIFFPYFKMKIGFFDDLDDYLVWKTETVKRT 67 | ANGKRVRKKSNKDIGINFVKITIPLSIAMQYDSKYLKFVRDLKNDKVPSY 68 | IKQNWPSIVKKDITINELREMGMEHLLKNLGELEND 69 | 70 | -------------------------------------------------------------------------------- /old/phacts.conf: -------------------------------------------------------------------------------- 1 | #------------------------------------------------------------------------ 2 | # This variable is used to set the number of replicate class predictions to perform. 3 | NUM_REPLICATES=10 4 | #------------------------------------------------------------------------ 5 | # This variable is used to set the threshold where important proteins are sampled around the mean. 6 | # A value of 0 includes all proteins 7 | # A value of 1 includes only proteins at or above the mean. 8 | # A value of 2 includes proteins with importance greater then twice the mean. 9 | CUTOFF_VALUE=1 10 | #------------------------------------------------------------------------ 11 | # This variable is used to set how many proteins per classification group are used in creating the similarity vectors 12 | # The number of proteins per group is calculated by dividing this number by the number of groups. 13 | NUM_VARIABLES=600 14 | #------------------------------------------------------------------------ 15 | # This is the number of training cases to use per class 16 | NUM_TRAINING_CASES=50 17 | #------------------------------------------------------------------------ 18 | # This is the path to your FASTA35 install 19 | FASTA_PATH=fasta-36.3.8h/bin/fasta36 20 | #------------------------------------------------------------------------ 21 | # Set this variable to the location of your genomes to be used as training cases 22 | GENOMES_PATH= 23 | #------------------------------------------------------------------------ 24 | # Set this variable to the location of your tab seperated file of genome_file names and classes 25 | CLASSES_PATH= 26 | #------------------------------------------------------------------------ 27 | # This variable is used to set whether to write the various data to file. 28 | WRITE_DATA_FILE=0 29 | #------------------------------------------------------------------------ 30 | # This variable is used to set whether to write . short one line summary as output. 31 | OUTPUT_SHORT=0 32 | #------------------------------------------------------------------------ -------------------------------------------------------------------------------- /old/sims.txt.7z: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/deprekate/PHACTS/5ce29fcef89180af905b9f968d402c30f47befaf/old/sims.txt.7z -------------------------------------------------------------------------------- /phacts/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | 3 | __all__ = [ 4 | 'load_data' 5 | ] 6 | -------------------------------------------------------------------------------- /phacts/lifestyle.pkl.xz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/deprekate/PHACTS/5ce29fcef89180af905b9f968d402c30f47befaf/phacts/lifestyle.pkl.xz -------------------------------------------------------------------------------- /phacts/linux.fasta35: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/deprekate/PHACTS/5ce29fcef89180af905b9f968d402c30f47befaf/phacts/linux.fasta35 -------------------------------------------------------------------------------- /phacts/load_data.py: -------------------------------------------------------------------------------- 1 | import lzma 2 | import dill 3 | import os 4 | import pkgutil 5 | import io 6 | import pkg_resources 7 | from subprocess import Popen, PIPE, STDOUT 8 | 9 | def lifestyle(): 10 | data = pkgutil.get_data(__name__, "lifestyle.pkl.xz") 11 | genomes = None 12 | f = io.BytesIO(lzma.decompress(data)) 13 | #with lzma.open(data, "rb") as f: 14 | # genomes = dill.load(f) 15 | genomes = dill.load(f) 16 | return genomes 17 | 18 | def fasta35(): 19 | p = False 20 | for f in ['fasta35osx', 'fasta35linux']: 21 | path = pkg_resources.resource_filename('phacts', f) 22 | print(path) 23 | p = Popen([path], stdout=PIPE, stdin=PIPE, stderr=PIPE) 24 | -------------------------------------------------------------------------------- /phacts/osx.fasta35: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/deprekate/PHACTS/5ce29fcef89180af905b9f968d402c30f47befaf/phacts/osx.fasta35 -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python3 2 | # encoding: utf-8 3 | 4 | import os 5 | #from distutils.core import setup, Extension 6 | from setuptools import setup, Extension, find_packages 7 | 8 | 9 | def readme(): 10 | with open("README.md", "r") as fh: 11 | long_desc = fh.read() 12 | return long_desc 13 | 14 | def get_version(): 15 | with open("VERSION", 'r') as f: 16 | v = f.readline().strip() 17 | return v 18 | 19 | def main(): 20 | setup ( 21 | name = 'phacts', 22 | version = get_version(), 23 | author = "Katelyn McNair", 24 | author_email = "deprekate@gmail.com", 25 | description = 'A program to predict the lifestyle (virulent/lytic or temperate/lysogenic) of a phage genome', 26 | long_description = readme(), 27 | long_description_content_type="text/markdown", 28 | url = "https://github.com/deprekate/phacts", 29 | scripts=['phacts.py'], 30 | classifiers=[ 31 | "Programming Language :: Python :: 3", 32 | "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)", 33 | "Operating System :: OS Independent", 34 | ], 35 | python_requires='>3.5.2', 36 | packages=find_packages(), 37 | package_data = {'': ['*.xz','*.fasta35'],}, 38 | install_requires=['sklearn','numpy','dill'], 39 | include_package_data=True, 40 | zip_safe=False 41 | ) 42 | 43 | 44 | if __name__ == "__main__": 45 | main() 46 | --------------------------------------------------------------------------------