├── .gitattributes ├── .github ├── ISSUE_TEMPLATE │ ├── bug-report.md │ ├── config.yml │ └── feature_request.md ├── PULL_REQUEST_TEMPLATE.md ├── dependabot.yml └── workflows │ ├── python-test-latest.yml │ └── python-test.yml ├── .gitignore ├── .readthedocs.yaml ├── CHANGELOG.rst ├── CITATION.cff ├── LICENSE.txt ├── LICENSES_bundled.txt ├── README.rst ├── docs ├── Makefile ├── _templates │ └── autosummary │ │ └── module.rst ├── algorithms │ ├── classification.rst │ ├── index.rst │ ├── misc.rst │ ├── morphological.rst │ ├── optimizers.rst │ ├── polynomial.rst │ ├── smooth.rst │ ├── spline.rst │ └── whittaker.rst ├── algorithms_2d │ ├── index.rst │ ├── morphological_2d.rst │ ├── optimizers_2d.rst │ ├── polynomial_2d.rst │ ├── smooth_2d.rst │ ├── spline_2d.rst │ └── whittaker_2d.rst ├── api │ ├── Baseline.rst │ ├── Baseline2D.rst │ ├── functional_interface.rst │ ├── index.rst │ └── utils.rst ├── authors.rst ├── changes.rst ├── citing.rst ├── conf.py ├── contributing.rst ├── examples │ ├── README.rst │ ├── classification │ │ ├── README.rst │ │ ├── plot_classifier_masks.py │ │ └── plot_fastchrom_threshold.py │ ├── general │ │ ├── README.rst │ │ ├── plot_algorithm_convergence.py │ │ ├── plot_masked_data.py │ │ ├── plot_noisy_data.py │ │ ├── plot_padding.py │ │ ├── plot_padding_extrapolate.py │ │ ├── plot_reuse_Baseline.py │ │ └── plot_sorted_data.py │ ├── misc │ │ ├── README.rst │ │ └── plot_beads_preprocessing.py │ ├── morphological │ │ ├── README.rst │ │ └── plot_half_window_effects.py │ ├── optimizers │ │ ├── README.rst │ │ └── plot_custom_bc_1_whittaker.py │ ├── spline │ │ ├── README.rst │ │ ├── plot_lam_vs_num_knots.py │ │ └── plot_pspline_whittaker.py │ ├── two_d │ │ ├── README.rst │ │ ├── plot_along_axes_1d_baseline.py │ │ └── plot_whittaker_2d_dof.py │ └── whittaker │ │ ├── README.rst │ │ ├── plot_lam_effects.py │ │ ├── plot_lam_vs_data_size.py │ │ └── plot_whittaker_solvers.py ├── images │ ├── logo.png │ └── quickstart.jpg ├── index.rst ├── installation.rst ├── introduction.rst ├── license.rst ├── make.bat ├── modify_module_docstring.py ├── parameter_selection.rst ├── performance.rst ├── quickstart.rst └── viewcode_inherit_methods.py ├── pybaselines ├── __init__.py ├── _algorithm_setup.py ├── _banded_utils.py ├── _compat.py ├── _spline_utils.py ├── _validation.py ├── _weighting.py ├── api.py ├── classification.py ├── misc.py ├── morphological.py ├── optimizers.py ├── polynomial.py ├── smooth.py ├── spline.py ├── two_d │ ├── __init__.py │ ├── _algorithm_setup.py │ ├── _spline_utils.py │ ├── _whittaker_utils.py │ ├── api.py │ ├── morphological.py │ ├── optimizers.py │ ├── polynomial.py │ ├── smooth.py │ ├── spline.py │ └── whittaker.py ├── utils.py └── whittaker.py ├── pyproject.toml ├── requirements ├── README.rst ├── requirements-development.txt ├── requirements-documentation.txt └── requirements.txt ├── tests ├── __init__.py ├── base_tests.py ├── conftest.py ├── data.py ├── test_algorithm_setup.py ├── test_api.py ├── test_banded_utils.py ├── test_classification.py ├── test_compat.py ├── test_meta.py ├── test_misc.py ├── test_morphological.py ├── test_optimizers.py ├── test_polynomial.py ├── test_smooth.py ├── test_spline.py ├── test_spline_utils.py ├── test_utils.py ├── test_validation.py ├── test_weighting.py ├── test_whittaker.py └── two_d │ ├── __init__.py │ ├── test_algorithm_setup.py │ ├── test_api.py │ ├── test_morphological.py │ ├── test_optimizers.py │ ├── test_polynomial.py │ ├── test_smooth.py │ ├── test_spline.py │ ├── test_spline_utils.py │ ├── test_whittaker.py │ └── test_whittaker_utils.py └── tools ├── logo_plot.py └── quickstart_plot.py /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/derb12/pybaselines/HEAD/.gitattributes -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/bug-report.md: -------------------------------------------------------------------------------- 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