├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── GridLMM.Rproj ├── LICENSE ├── NAMESPACE ├── R ├── GridLMM.R ├── GridLMM_GWAS.R ├── GridLMM_GWAS_set.R ├── GridLMMnet.R ├── RcppExports.R ├── Utilities.R └── misc.R ├── README.md ├── README.nb.html ├── man ├── GridLMM_GWAS.Rd ├── GridLMM_GWAS_set.Rd ├── GridLMM_ML.Rd ├── GridLMM_posterior.Rd ├── GridLMMnet.Rd ├── my_detectCores.Rd ├── prep_LDAK_Kinship.Rd └── set_p_test.Rd ├── misc ├── GridLMM_GBLUP.R ├── GridLMMnet_working.R ├── Grid_figure.pdf ├── Grid_figure.png ├── Running_GridLMMnet.Rmd ├── Running_GridLMMnet.nb.html ├── Test_chol_downdate.R ├── Test_chol_downdate.cpp ├── Testing_GridLMM.R └── test.cpp ├── src ├── GridLMM_functions.cpp ├── GridLMM_types.h ├── GridLMMnet_functions.cpp ├── Makevars ├── Makevars.win ├── RcppExports.cpp ├── init.c └── test.cpp └── vignettes ├── Running_GridLMM_GWAS.Rmd ├── Running_GridLMM_GWAS.html ├── Running_GridLMM_GWAS.nb.html ├── Running_GridLMM_GWAS_files └── figure-html │ └── 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