├── .gitignore ├── LICENSE ├── README.md ├── baselines_epidemic_variational.py ├── baselines_locfin_nontrainable.py ├── baselines_locfin_variational.py ├── baselines_pharmaco_nontrainable.py ├── baselines_pharmaco_variational.py ├── epidemic.py ├── epidemic_simulate_data.py ├── estimators ├── bb_mi.py └── mi.py ├── eval_epidemic.py ├── eval_epidemic_variational.py ├── eval_sPCE.py ├── eval_sPCE_from_source.py ├── example_epidemic.ipynb ├── experiment_tools ├── output_utils.py ├── pyro_tools.py └── scheduler.py ├── location_finding.py ├── neural ├── aggregators.py ├── baselines.py ├── critics.py └── modules.py ├── oed ├── design.py └── primitives.py ├── pharmacokinetic.py ├── plot_epidemic.py ├── plot_epidemic_posterior.py ├── plot_locfin.py ├── plot_pharmaco.py └── requirements.txt /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/README.md -------------------------------------------------------------------------------- /baselines_epidemic_variational.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/baselines_epidemic_variational.py -------------------------------------------------------------------------------- /baselines_locfin_nontrainable.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/baselines_locfin_nontrainable.py -------------------------------------------------------------------------------- /baselines_locfin_variational.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/baselines_locfin_variational.py -------------------------------------------------------------------------------- /baselines_pharmaco_nontrainable.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/baselines_pharmaco_nontrainable.py -------------------------------------------------------------------------------- /baselines_pharmaco_variational.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/baselines_pharmaco_variational.py -------------------------------------------------------------------------------- /epidemic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/epidemic.py -------------------------------------------------------------------------------- /epidemic_simulate_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/epidemic_simulate_data.py -------------------------------------------------------------------------------- /estimators/bb_mi.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/estimators/bb_mi.py -------------------------------------------------------------------------------- /estimators/mi.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/estimators/mi.py -------------------------------------------------------------------------------- /eval_epidemic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/eval_epidemic.py -------------------------------------------------------------------------------- /eval_epidemic_variational.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/eval_epidemic_variational.py -------------------------------------------------------------------------------- /eval_sPCE.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/eval_sPCE.py -------------------------------------------------------------------------------- /eval_sPCE_from_source.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/eval_sPCE_from_source.py -------------------------------------------------------------------------------- /example_epidemic.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/example_epidemic.ipynb -------------------------------------------------------------------------------- /experiment_tools/output_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/experiment_tools/output_utils.py -------------------------------------------------------------------------------- /experiment_tools/pyro_tools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/experiment_tools/pyro_tools.py -------------------------------------------------------------------------------- /experiment_tools/scheduler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/experiment_tools/scheduler.py -------------------------------------------------------------------------------- /location_finding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/location_finding.py -------------------------------------------------------------------------------- /neural/aggregators.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/neural/aggregators.py -------------------------------------------------------------------------------- /neural/baselines.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/neural/baselines.py -------------------------------------------------------------------------------- /neural/critics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/neural/critics.py -------------------------------------------------------------------------------- /neural/modules.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/neural/modules.py -------------------------------------------------------------------------------- /oed/design.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/oed/design.py -------------------------------------------------------------------------------- /oed/primitives.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/oed/primitives.py -------------------------------------------------------------------------------- /pharmacokinetic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/pharmacokinetic.py -------------------------------------------------------------------------------- /plot_epidemic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/plot_epidemic.py -------------------------------------------------------------------------------- /plot_epidemic_posterior.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/plot_epidemic_posterior.py -------------------------------------------------------------------------------- /plot_locfin.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/plot_locfin.py -------------------------------------------------------------------------------- /plot_pharmaco.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/plot_pharmaco.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/desi-ivanova/idad/HEAD/requirements.txt --------------------------------------------------------------------------------