├── .gitignore ├── README.md ├── catalog ├── README.md ├── catalog.xlsx ├── diseases.tsv ├── drugs.tsv └── indications.tsv ├── cite-styles └── plos-mod.csl ├── curation ├── README.md ├── ajg │ ├── List of Drugs for Daniel Himmelstein.xlsx │ ├── curation-AJG.tsv │ └── process-ajg.ipynb ├── catalog.ipynb ├── compare-pilot.ipynb ├── csh │ ├── List of meds CSH.xlsx │ ├── README.md │ ├── curation-CSH.csv │ └── curation-CSH.wrangle ├── pilot │ ├── ajg.tsv │ ├── combined.tsv │ ├── combined.xlsx │ ├── csh.tsv │ ├── template.tsv │ └── template.xlsx ├── pk │ ├── curation-PK.tsv │ ├── template-pk final.xlsx │ ├── template-pk.tsv │ └── template-pk.xlsx ├── results-PK-changes.tsv ├── results-three-curators.ipynb ├── results-three-curators.tsv ├── results-threeway-disagreements.tsv ├── template │ ├── template-ajg.tsv │ ├── template-ajg.xlsx │ ├── template-csh.tsv │ ├── template-csh.xlsx │ ├── template.ipynb │ └── template.tsv └── tiebreaker-template.ipynb ├── data ├── indications-slim-collapsed.tsv ├── indications-slim-verbose.tsv ├── indications-verbose.tsv └── rxcui-unii-map.tsv ├── ehrlink ├── convert-to-text.ipynb ├── data │ ├── indications.tsv │ ├── medications.tsv │ ├── problem-to-doid.tsv │ ├── problems.tsv │ └── rxnorm-as-ingredient.tsv ├── download │ ├── amiajnl-2012-000852-s1.pdf │ ├── amiajnl-2012-000852-s1.tsv │ └── amiajnl-2012-000852-s1.txt ├── index.Rmd ├── index.html ├── problem-map.ipynb └── rxnorm-ingredient-map.ipynb ├── include ├── after_body.html ├── before_body.html └── in_header.html ├── index.Rmd ├── index.html ├── labeledin ├── data │ ├── indications.tsv │ └── mesh-umls-map.txt.gz ├── download │ ├── Annotated Corpus Set#RxOnly.html │ ├── Annotation_Guidelines.pdf │ ├── Crowdsourcing │ │ ├── Crowdsourced_Results.txt │ │ ├── README.txt │ │ └── answer_codes.txt │ ├── LabeledIn Overview Slides.pdf │ ├── LabeledIn_Structured_Results.txt │ ├── LabeledIn_annotated_XML.txt │ ├── MESH.csv.gz │ ├── README.txt │ └── RXNORM.csv.gz ├── index.Rmd ├── index.html └── 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